data_9G80 # _model_server_result.job_id Kjl2422xcvQWblCisLx1mA _model_server_result.datetime_utc '2025-08-05 05:05:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9g80 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 9G80 # _exptl.entry_id 9G80 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 517.555 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Piperacillin _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9G80 _cell.length_a 42.15 _cell.length_b 42.15 _cell.length_c 234.2 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9G80 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall 'P 32 2"' _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H27 N5 O7 S' _chem_comp.formula_weight 517.555 _chem_comp.id WPP _chem_comp.mon_nstd_flag . _chem_comp.name Piperacillin _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(2S,5R,6R)-6-{[(2R)-2-{[(4-ethyl-2,3-dioxopiperazin-1-yl)carbonyl]amino}-2-phenylacetyl]amino}-3,3-dimethyl-7-oxo-4-thi a-1-azabicyclo[3.2.0]heptane-2-carboxylic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O WPP doub 380 n n C CA WPP sing 381 n n C NBB WPP sing 382 n n N CA WPP sing 383 n n N CAK WPP sing 384 n n CA CB WPP sing 385 n n CB NBB WPP sing 386 n n CB SBJ WPP sing 387 n n CAC CAS WPP doub 388 n y CAC CAW WPP sing 389 n y CAE CAF WPP sing 390 n n CAE CAO WPP sing 391 n n CAE NBB WPP sing 392 n n CAF CAH WPP sing 393 n n CAF CAI WPP sing 394 n n CAF SBJ WPP sing 395 n n CAG NAY WPP sing 396 n n CAG NAZ WPP sing 397 n n CAG OBG WPP doub 398 n n CAJ CAR WPP sing 399 n n CAJ NAZ WPP sing 400 n n CAK CAM WPP sing 401 n n CAK OBC WPP doub 402 n n CAL CAQ WPP sing 403 n n CAM CAS WPP sing 404 n n CAM NAY WPP sing 405 n n CAN CAP WPP sing 406 n n CAN NAZ WPP sing 407 n n CAN OBI WPP doub 408 n n CAO OBE WPP sing 409 n n CAO OBF WPP doub 410 n n CAP NBA WPP sing 411 n n CAP OBH WPP doub 412 n n CAQ NBA WPP sing 413 n n CAR NBA WPP sing 414 n n CAS CAT WPP sing 415 n y CAT CAU WPP doub 416 n y CAU CAV WPP sing 417 n y CAV CAW WPP doub 418 n y N HN WPP sing 419 n n CA HA WPP sing 420 n n CB HB WPP sing 421 n n CAC HAC WPP sing 422 n n CAE HAE WPP sing 423 n n CAH HAH WPP sing 424 n n CAH HAHA WPP sing 425 n n CAH HAHB WPP sing 426 n n CAI HAI WPP sing 427 n n CAI HAIA WPP sing 428 n n CAI HAIB WPP sing 429 n n CAJ HAJ WPP sing 430 n n CAJ HAJA WPP sing 431 n n CAL HAL WPP sing 432 n n CAL HALA WPP sing 433 n n CAL HALB WPP sing 434 n n CAM HAM WPP sing 435 n n CAQ HAQ WPP sing 436 n n CAQ HAQA WPP sing 437 n n CAR HAR WPP sing 438 n n CAR HARA WPP sing 439 n n CAT HAT WPP sing 440 n n CAU HAU WPP sing 441 n n CAV HAV WPP sing 442 n n CAW HAW WPP sing 443 n n NAY HNAY WPP sing 444 n n OBE HBE WPP sing 445 n n # _atom_sites.entry_id 9G80 _atom_sites.fract_transf_matrix[1][1] 0.023725 _atom_sites.fract_transf_matrix[1][2] 0.013698 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.027395 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00427 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 WPP A 1 301 301 WPP WPP . C 3 YPP A 1 302 302 YPP YPP . D 4 SO4 A 1 303 1 SO4 SO4 . E 5 HOH A 1 401 130 HOH HOH . E 5 HOH A 2 402 52 HOH HOH . E 5 HOH A 3 403 129 HOH HOH . E 5 HOH A 4 404 56 HOH HOH . E 5 HOH A 5 405 69 HOH HOH . E 5 HOH A 6 406 9 HOH HOH . E 5 HOH A 7 407 154 HOH HOH . E 5 HOH A 8 408 137 HOH HOH . E 5 HOH A 9 409 50 HOH HOH . E 5 HOH A 10 410 176 HOH HOH . E 5 HOH A 11 411 63 HOH HOH . E 5 HOH A 12 412 13 HOH HOH . E 5 HOH A 13 413 38 HOH HOH . E 5 HOH A 14 414 182 HOH HOH . E 5 HOH A 15 415 71 HOH HOH . E 5 HOH A 16 416 12 HOH HOH . E 5 HOH A 17 417 122 HOH HOH . E 5 HOH A 18 418 155 HOH HOH . E 5 HOH A 19 419 34 HOH HOH . E 5 HOH A 20 420 169 HOH HOH . E 5 HOH A 21 421 109 HOH HOH . E 5 HOH A 22 422 65 HOH HOH . E 5 HOH A 23 423 10 HOH HOH . E 5 HOH A 24 424 5 HOH HOH . E 5 HOH A 25 425 174 HOH HOH . E 5 HOH A 26 426 125 HOH HOH . E 5 HOH A 27 427 1 HOH HOH . E 5 HOH A 28 428 2 HOH HOH . E 5 HOH A 29 429 61 HOH HOH . E 5 HOH A 30 430 23 HOH HOH . E 5 HOH A 31 431 67 HOH HOH . E 5 HOH A 32 432 28 HOH HOH . E 5 HOH A 33 433 72 HOH HOH . E 5 HOH A 34 434 53 HOH HOH . E 5 HOH A 35 435 121 HOH HOH . E 5 HOH A 36 436 8 HOH HOH . E 5 HOH A 37 437 24 HOH HOH . E 5 HOH A 38 438 22 HOH HOH . E 5 HOH A 39 439 29 HOH HOH . E 5 HOH A 40 440 3 HOH HOH . E 5 HOH A 41 441 107 HOH HOH . E 5 HOH A 42 442 47 HOH HOH . E 5 HOH A 43 443 117 HOH HOH . E 5 HOH A 44 444 62 HOH HOH . E 5 HOH A 45 445 37 HOH HOH . E 5 HOH A 46 446 36 HOH HOH . E 5 HOH A 47 447 4 HOH HOH . E 5 HOH A 48 448 35 HOH HOH . E 5 HOH A 49 449 183 HOH HOH . E 5 HOH A 50 450 105 HOH HOH . E 5 HOH A 51 451 163 HOH HOH . E 5 HOH A 52 452 31 HOH HOH . E 5 HOH A 53 453 141 HOH HOH . E 5 HOH A 54 454 75 HOH HOH . E 5 HOH A 55 455 33 HOH HOH . E 5 HOH A 56 456 6 HOH HOH . E 5 HOH A 57 457 15 HOH HOH . E 5 HOH A 58 458 11 HOH HOH . E 5 HOH A 59 459 32 HOH HOH . E 5 HOH A 60 460 80 HOH HOH . E 5 HOH A 61 461 48 HOH HOH . E 5 HOH A 62 462 184 HOH HOH . E 5 HOH A 63 463 150 HOH HOH . E 5 HOH A 64 464 7 HOH HOH . E 5 HOH A 65 465 18 HOH HOH . E 5 HOH A 66 466 25 HOH HOH . E 5 HOH A 67 467 16 HOH HOH . E 5 HOH A 68 468 96 HOH HOH . E 5 HOH A 69 469 17 HOH HOH . E 5 HOH A 70 470 86 HOH HOH . E 5 HOH A 71 471 181 HOH HOH . E 5 HOH A 72 472 40 HOH HOH . E 5 HOH A 73 473 20 HOH HOH . E 5 HOH A 74 474 171 HOH HOH . E 5 HOH A 75 475 85 HOH HOH . E 5 HOH A 76 476 113 HOH HOH . E 5 HOH A 77 477 142 HOH HOH . E 5 HOH A 78 478 173 HOH HOH . E 5 HOH A 79 479 26 HOH HOH . E 5 HOH A 80 480 91 HOH HOH . E 5 HOH A 81 481 41 HOH HOH . E 5 HOH A 82 482 123 HOH HOH . E 5 HOH A 83 483 88 HOH HOH . E 5 HOH A 84 484 55 HOH HOH . E 5 HOH A 85 485 51 HOH HOH . E 5 HOH A 86 486 108 HOH HOH . E 5 HOH A 87 487 60 HOH HOH . E 5 HOH A 88 488 145 HOH HOH . E 5 HOH A 89 489 57 HOH HOH . E 5 HOH A 90 490 77 HOH HOH . E 5 HOH A 91 491 93 HOH HOH . E 5 HOH A 92 492 89 HOH HOH . E 5 HOH A 93 493 73 HOH HOH . E 5 HOH A 94 494 116 HOH HOH . E 5 HOH A 95 495 120 HOH HOH . E 5 HOH A 96 496 127 HOH HOH . E 5 HOH A 97 497 136 HOH HOH . E 5 HOH A 98 498 186 HOH HOH . E 5 HOH A 99 499 45 HOH HOH . E 5 HOH A 100 500 103 HOH HOH . E 5 HOH A 101 501 76 HOH HOH . E 5 HOH A 102 502 110 HOH HOH . E 5 HOH A 103 503 135 HOH HOH . E 5 HOH A 104 504 78 HOH HOH . E 5 HOH A 105 505 58 HOH HOH . E 5 HOH A 106 506 64 HOH HOH . E 5 HOH A 107 507 66 HOH HOH . E 5 HOH A 108 508 167 HOH HOH . E 5 HOH A 109 509 30 HOH HOH . E 5 HOH A 110 510 133 HOH HOH . E 5 HOH A 111 511 19 HOH HOH . E 5 HOH A 112 512 90 HOH HOH . E 5 HOH A 113 513 140 HOH HOH . E 5 HOH A 114 514 21 HOH HOH . E 5 HOH A 115 515 102 HOH HOH . E 5 HOH A 116 516 14 HOH HOH . E 5 HOH A 117 517 74 HOH HOH . E 5 HOH A 118 518 68 HOH HOH . E 5 HOH A 119 519 92 HOH HOH . E 5 HOH A 120 520 148 HOH HOH . E 5 HOH A 121 521 81 HOH HOH . E 5 HOH A 122 522 146 HOH HOH . E 5 HOH A 123 523 126 HOH HOH . E 5 HOH A 124 524 46 HOH HOH . E 5 HOH A 125 525 147 HOH HOH . E 5 HOH A 126 526 162 HOH HOH . E 5 HOH A 127 527 168 HOH HOH . E 5 HOH A 128 528 43 HOH HOH . E 5 HOH A 129 529 114 HOH HOH . E 5 HOH A 130 530 118 HOH HOH . E 5 HOH A 131 531 44 HOH HOH . E 5 HOH A 132 532 27 HOH HOH . E 5 HOH A 133 533 54 HOH HOH . E 5 HOH A 134 534 149 HOH HOH . E 5 HOH A 135 535 156 HOH HOH . E 5 HOH A 136 536 164 HOH HOH . E 5 HOH A 137 537 165 HOH HOH . E 5 HOH A 138 538 115 HOH HOH . E 5 HOH A 139 539 99 HOH HOH . E 5 HOH A 140 540 185 HOH HOH . E 5 HOH A 141 541 104 HOH HOH . E 5 HOH A 142 542 87 HOH HOH . E 5 HOH A 143 543 131 HOH HOH . E 5 HOH A 144 544 132 HOH HOH . E 5 HOH A 145 545 112 HOH HOH . E 5 HOH A 146 546 95 HOH HOH . E 5 HOH A 147 547 39 HOH HOH . E 5 HOH A 148 548 82 HOH HOH . E 5 HOH A 149 549 157 HOH HOH . E 5 HOH A 150 550 49 HOH HOH . E 5 HOH A 151 551 83 HOH HOH . E 5 HOH A 152 552 180 HOH HOH . E 5 HOH A 153 553 42 HOH HOH . E 5 HOH A 154 554 152 HOH HOH . E 5 HOH A 155 555 101 HOH HOH . E 5 HOH A 156 556 100 HOH HOH . E 5 HOH A 157 557 138 HOH HOH . E 5 HOH A 158 558 177 HOH HOH . E 5 HOH A 159 559 106 HOH HOH . E 5 HOH A 160 560 111 HOH HOH . E 5 HOH A 161 561 139 HOH HOH . E 5 HOH A 162 562 70 HOH HOH . E 5 HOH A 163 563 98 HOH HOH . E 5 HOH A 164 564 124 HOH HOH . E 5 HOH A 165 565 119 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C WPP . A . B 2 3.47 0.213 17.94 0.21 48.88 ? C WPP 301 A 1 HETATM 2 N N WPP . A . B 2 5.714 -0.503 18.382 0.21 50.48 ? N WPP 301 A 1 HETATM 3 O O WPP . A . B 2 2.609 -0.531 18.262 0.21 47.98 ? O WPP 301 A 1 HETATM 4 C CA WPP . A . B 2 4.889 0.629 18.376 0.21 49.91 ? CA WPP 301 A 1 HETATM 5 C CB WPP . A . B 2 5.152 1.634 17.332 0.21 49.74 ? CB WPP 301 A 1 HETATM 6 C CAC WPP . A . B 2 8.965 -1.693 17.68 0.21 53.24 ? CAC WPP 301 A 1 HETATM 7 C CAE WPP . A . B 2 3.267 1.682 15.582 0.21 47.71 ? CAE WPP 301 A 1 HETATM 8 C CAF WPP . A . B 2 4.709 2.142 15.018 0.21 49.02 ? CAF WPP 301 A 1 HETATM 9 C CAG WPP . A . B 2 8.012 -4.304 20.467 0.21 52.03 ? CAG WPP 301 A 1 HETATM 10 C CAH WPP . A . B 2 4.892 3.64 15.259 0.21 48.48 ? CAH WPP 301 A 1 HETATM 11 C CAI WPP . A . B 2 4.842 1.801 13.535 0.21 48.62 ? CAI WPP 301 A 1 HETATM 12 C CAJ WPP . A . B 2 8.952 -6.444 21.831 0.21 50.9 ? CAJ WPP 301 A 1 HETATM 13 C CAK WPP . A . B 2 6.247 -1.224 19.52 0.21 51.23 ? CAK WPP 301 A 1 HETATM 14 C CAL WPP . A . B 2 10.743 -8.015 25.043 0.21 51.71 ? CAL WPP 301 A 1 HETATM 15 C CAM WPP . A . B 2 7.056 -2.468 19.158 0.21 51.2 ? CAM WPP 301 A 1 HETATM 16 C CAN WPP . A . B 2 9.805 -4.166 22.171 0.21 51.87 ? CAN WPP 301 A 1 HETATM 17 C CAO WPP . A . B 2 2.252 2.681 15.684 0.21 48.07 ? CAO WPP 301 A 1 HETATM 18 C CAP WPP . A . B 2 10.443 -4.74 23.476 0.21 51.77 ? CAP WPP 301 A 1 HETATM 19 C CAQ WPP . A . B 2 10.609 -6.498 25.197 0.21 51.19 ? CAQ WPP 301 A 1 HETATM 20 C CAR WPP . A . B 2 8.898 -6.669 23.115 0.21 50.47 ? CAR WPP 301 A 1 HETATM 21 C CAS WPP . A . B 2 7.72 -2.288 17.793 0.21 52.23 ? CAS WPP 301 A 1 HETATM 22 C CAT WPP . A . B 2 7.056 -2.734 16.66 0.21 51.74 ? CAT WPP 301 A 1 HETATM 23 C CAU WPP . A . B 2 7.633 -2.584 15.41 0.21 51.6 ? CAU WPP 301 A 1 HETATM 24 C CAV WPP . A . B 2 8.877 -1.989 15.297 0.21 52.78 ? CAV WPP 301 A 1 HETATM 25 C CAW WPP . A . B 2 9.543 -1.544 16.429 0.21 53.67 ? CAW WPP 301 A 1 HETATM 26 N NAY WPP . A . B 2 8.015 -2.881 20.172 0.21 51.75 ? NAY WPP 301 A 1 HETATM 27 N NAZ WPP . A . B 2 8.918 -4.878 21.456 0.21 51.82 ? NAZ WPP 301 A 1 HETATM 28 N NBA WPP . A . B 2 10.043 -5.929 23.981 0.21 52.03 ? NBA WPP 301 A 1 HETATM 29 N NBB WPP . A . B 2 3.75 1.169 16.883 0.21 48.66 ? NBB WPP 301 A 1 HETATM 30 O OBC WPP . A . B 2 6.062 -0.886 20.64 0.21 51.1 ? OBC WPP 301 A 1 HETATM 31 O OBE WPP . A . B 2 1.815 3.245 14.642 0.21 49.55 ? OBE WPP 301 A 1 HETATM 32 O OBF WPP . A . B 2 1.764 2.951 16.81 0.21 48.14 ? OBF WPP 301 A 1 HETATM 33 O OBG WPP . A . B 2 7.259 -5.009 19.888 0.21 52.15 ? OBG WPP 301 A 1 HETATM 34 O OBH WPP . A . B 2 11.28 -4.12 24.04 0.21 52.14 ? OBH WPP 301 A 1 HETATM 35 O OBI WPP . A . B 2 10.113 -3.084 21.794 0.21 51.66 ? OBI WPP 301 A 1 HETATM 36 S SBJ WPP . A . B 2 5.742 1.38 15.824 0.21 52.97 ? SBJ WPP 301 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 36 #