data_9G81 # _model_server_result.job_id a_uttksYV0-1nkKdSV8TKQ _model_server_result.datetime_utc '2025-08-05 12:10:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9g81 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 9G81 # _exptl.entry_id 9G81 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 517.555 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Piperacillin _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9G81 _cell.length_a 42.15 _cell.length_b 42.15 _cell.length_c 234.2 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9G81 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall 'P 32 2"' _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H27 N5 O7 S' _chem_comp.formula_weight 517.555 _chem_comp.id WPP _chem_comp.mon_nstd_flag . _chem_comp.name Piperacillin _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(2S,5R,6R)-6-{[(2R)-2-{[(4-ethyl-2,3-dioxopiperazin-1-yl)carbonyl]amino}-2-phenylacetyl]amino}-3,3-dimethyl-7-oxo-4-thi a-1-azabicyclo[3.2.0]heptane-2-carboxylic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O WPP doub 380 n n C CA WPP sing 381 n n C NBB WPP sing 382 n n N CA WPP sing 383 n n N CAK WPP sing 384 n n CA CB WPP sing 385 n n CB NBB WPP sing 386 n n CB SBJ WPP sing 387 n n CAC CAS WPP doub 388 n y CAC CAW WPP sing 389 n y CAE CAF WPP sing 390 n n CAE CAO WPP sing 391 n n CAE NBB WPP sing 392 n n CAF CAH WPP sing 393 n n CAF CAI WPP sing 394 n n CAF SBJ WPP sing 395 n n CAG NAY WPP sing 396 n n CAG NAZ WPP sing 397 n n CAG OBG WPP doub 398 n n CAJ CAR WPP sing 399 n n CAJ NAZ WPP sing 400 n n CAK CAM WPP sing 401 n n CAK OBC WPP doub 402 n n CAL CAQ WPP sing 403 n n CAM CAS WPP sing 404 n n CAM NAY WPP sing 405 n n CAN CAP WPP sing 406 n n CAN NAZ WPP sing 407 n n CAN OBI WPP doub 408 n n CAO OBE WPP sing 409 n n CAO OBF WPP doub 410 n n CAP NBA WPP sing 411 n n CAP OBH WPP doub 412 n n CAQ NBA WPP sing 413 n n CAR NBA WPP sing 414 n n CAS CAT WPP sing 415 n y CAT CAU WPP doub 416 n y CAU CAV WPP sing 417 n y CAV CAW WPP doub 418 n y N HN WPP sing 419 n n CA HA WPP sing 420 n n CB HB WPP sing 421 n n CAC HAC WPP sing 422 n n CAE HAE WPP sing 423 n n CAH HAH WPP sing 424 n n CAH HAHA WPP sing 425 n n CAH HAHB WPP sing 426 n n CAI HAI WPP sing 427 n n CAI HAIA WPP sing 428 n n CAI HAIB WPP sing 429 n n CAJ HAJ WPP sing 430 n n CAJ HAJA WPP sing 431 n n CAL HAL WPP sing 432 n n CAL HALA WPP sing 433 n n CAL HALB WPP sing 434 n n CAM HAM WPP sing 435 n n CAQ HAQ WPP sing 436 n n CAQ HAQA WPP sing 437 n n CAR HAR WPP sing 438 n n CAR HARA WPP sing 439 n n CAT HAT WPP sing 440 n n CAU HAU WPP sing 441 n n CAV HAV WPP sing 442 n n CAW HAW WPP sing 443 n n NAY HNAY WPP sing 444 n n OBE HBE WPP sing 445 n n # _atom_sites.entry_id 9G81 _atom_sites.fract_transf_matrix[1][1] 0.023725 _atom_sites.fract_transf_matrix[1][2] 0.013698 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.027395 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00427 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 WPP A 1 301 301 WPP WPP . C 3 YPP A 1 302 302 YPP YPP . D 4 SO4 A 1 303 1 SO4 SO4 . E 5 HOH A 1 401 174 HOH HOH . E 5 HOH A 2 402 187 HOH HOH . E 5 HOH A 3 403 38 HOH HOH . E 5 HOH A 4 404 63 HOH HOH . E 5 HOH A 5 405 176 HOH HOH . E 5 HOH A 6 406 109 HOH HOH . E 5 HOH A 7 407 195 HOH HOH . E 5 HOH A 8 408 50 HOH HOH . E 5 HOH A 9 409 62 HOH HOH . E 5 HOH A 10 410 129 HOH HOH . E 5 HOH A 11 411 190 HOH HOH . E 5 HOH A 12 412 107 HOH HOH . E 5 HOH A 13 413 31 HOH HOH . E 5 HOH A 14 414 24 HOH HOH . E 5 HOH A 15 415 183 HOH HOH . E 5 HOH A 16 416 13 HOH HOH . E 5 HOH A 17 417 56 HOH HOH . E 5 HOH A 18 418 71 HOH HOH . E 5 HOH A 19 419 171 HOH HOH . E 5 HOH A 20 420 85 HOH HOH . E 5 HOH A 21 421 61 HOH HOH . E 5 HOH A 22 422 48 HOH HOH . E 5 HOH A 23 423 130 HOH HOH . E 5 HOH A 24 424 5 HOH HOH . E 5 HOH A 25 425 59 HOH HOH . E 5 HOH A 26 426 52 HOH HOH . E 5 HOH A 27 427 58 HOH HOH . E 5 HOH A 28 428 137 HOH HOH . E 5 HOH A 29 429 51 HOH HOH . E 5 HOH A 30 430 10 HOH HOH . E 5 HOH A 31 431 117 HOH HOH . E 5 HOH A 32 432 49 HOH HOH . E 5 HOH A 33 433 37 HOH HOH . E 5 HOH A 34 434 34 HOH HOH . E 5 HOH A 35 435 25 HOH HOH . E 5 HOH A 36 436 12 HOH HOH . E 5 HOH A 37 437 202 HOH HOH . E 5 HOH A 38 438 67 HOH HOH . E 5 HOH A 39 439 96 HOH HOH . E 5 HOH A 40 440 88 HOH HOH . E 5 HOH A 41 441 47 HOH HOH . E 5 HOH A 42 442 9 HOH HOH . E 5 HOH A 43 443 28 HOH HOH . E 5 HOH A 44 444 23 HOH HOH . E 5 HOH A 45 445 33 HOH HOH . E 5 HOH A 46 446 105 HOH HOH . E 5 HOH A 47 447 15 HOH HOH . E 5 HOH A 48 448 1 HOH HOH . E 5 HOH A 49 449 189 HOH HOH . E 5 HOH A 50 450 7 HOH HOH . E 5 HOH A 51 451 53 HOH HOH . E 5 HOH A 52 452 127 HOH HOH . E 5 HOH A 53 453 125 HOH HOH . E 5 HOH A 54 454 3 HOH HOH . E 5 HOH A 55 455 154 HOH HOH . E 5 HOH A 56 456 29 HOH HOH . E 5 HOH A 57 457 141 HOH HOH . E 5 HOH A 58 458 122 HOH HOH . E 5 HOH A 59 459 169 HOH HOH . E 5 HOH A 60 460 188 HOH HOH . E 5 HOH A 61 461 2 HOH HOH . E 5 HOH A 62 462 32 HOH HOH . E 5 HOH A 63 463 198 HOH HOH . E 5 HOH A 64 464 89 HOH HOH . E 5 HOH A 65 465 16 HOH HOH . E 5 HOH A 66 466 17 HOH HOH . E 5 HOH A 67 467 113 HOH HOH . E 5 HOH A 68 468 8 HOH HOH . E 5 HOH A 69 469 72 HOH HOH . E 5 HOH A 70 470 121 HOH HOH . E 5 HOH A 71 471 75 HOH HOH . E 5 HOH A 72 472 65 HOH HOH . E 5 HOH A 73 473 4 HOH HOH . E 5 HOH A 74 474 22 HOH HOH . E 5 HOH A 75 475 90 HOH HOH . E 5 HOH A 76 476 193 HOH HOH . E 5 HOH A 77 477 168 HOH HOH . E 5 HOH A 78 478 182 HOH HOH . E 5 HOH A 79 479 35 HOH HOH . E 5 HOH A 80 480 78 HOH HOH . E 5 HOH A 81 481 41 HOH HOH . E 5 HOH A 82 482 91 HOH HOH . E 5 HOH A 83 483 36 HOH HOH . E 5 HOH A 84 484 167 HOH HOH . E 5 HOH A 85 485 18 HOH HOH . E 5 HOH A 86 486 84 HOH HOH . E 5 HOH A 87 487 6 HOH HOH . E 5 HOH A 88 488 118 HOH HOH . E 5 HOH A 89 489 57 HOH HOH . E 5 HOH A 90 490 26 HOH HOH . E 5 HOH A 91 491 11 HOH HOH . E 5 HOH A 92 492 123 HOH HOH . E 5 HOH A 93 493 73 HOH HOH . E 5 HOH A 94 494 20 HOH HOH . E 5 HOH A 95 495 120 HOH HOH . E 5 HOH A 96 496 194 HOH HOH . E 5 HOH A 97 497 93 HOH HOH . E 5 HOH A 98 498 108 HOH HOH . E 5 HOH A 99 499 30 HOH HOH . E 5 HOH A 100 500 135 HOH HOH . E 5 HOH A 101 501 19 HOH HOH . E 5 HOH A 102 502 14 HOH HOH . E 5 HOH A 103 503 134 HOH HOH . E 5 HOH A 104 504 186 HOH HOH . E 5 HOH A 105 505 80 HOH HOH . E 5 HOH A 106 506 86 HOH HOH . E 5 HOH A 107 507 200 HOH HOH . E 5 HOH A 108 508 196 HOH HOH . E 5 HOH A 109 509 60 HOH HOH . E 5 HOH A 110 510 40 HOH HOH . E 5 HOH A 111 511 76 HOH HOH . E 5 HOH A 112 512 197 HOH HOH . E 5 HOH A 113 513 102 HOH HOH . E 5 HOH A 114 514 115 HOH HOH . E 5 HOH A 115 515 68 HOH HOH . E 5 HOH A 116 516 27 HOH HOH . E 5 HOH A 117 517 45 HOH HOH . E 5 HOH A 118 518 163 HOH HOH . E 5 HOH A 119 519 74 HOH HOH . E 5 HOH A 120 520 191 HOH HOH . E 5 HOH A 121 521 173 HOH HOH . E 5 HOH A 122 522 146 HOH HOH . E 5 HOH A 123 523 150 HOH HOH . E 5 HOH A 124 524 184 HOH HOH . E 5 HOH A 125 525 140 HOH HOH . E 5 HOH A 126 526 44 HOH HOH . E 5 HOH A 127 527 92 HOH HOH . E 5 HOH A 128 528 46 HOH HOH . E 5 HOH A 129 529 43 HOH HOH . E 5 HOH A 130 530 64 HOH HOH . E 5 HOH A 131 531 145 HOH HOH . E 5 HOH A 132 532 66 HOH HOH . E 5 HOH A 133 533 148 HOH HOH . E 5 HOH A 134 534 77 HOH HOH . E 5 HOH A 135 535 21 HOH HOH . E 5 HOH A 136 536 103 HOH HOH . E 5 HOH A 137 537 126 HOH HOH . E 5 HOH A 138 538 97 HOH HOH . E 5 HOH A 139 539 156 HOH HOH . E 5 HOH A 140 540 192 HOH HOH . E 5 HOH A 141 541 55 HOH HOH . E 5 HOH A 142 542 201 HOH HOH . E 5 HOH A 143 543 199 HOH HOH . E 5 HOH A 144 544 133 HOH HOH . E 5 HOH A 145 545 116 HOH HOH . E 5 HOH A 146 546 162 HOH HOH . E 5 HOH A 147 547 149 HOH HOH . E 5 HOH A 148 548 54 HOH HOH . E 5 HOH A 149 549 164 HOH HOH . E 5 HOH A 150 550 99 HOH HOH . E 5 HOH A 151 551 136 HOH HOH . E 5 HOH A 152 552 181 HOH HOH . E 5 HOH A 153 553 81 HOH HOH . E 5 HOH A 154 554 165 HOH HOH . E 5 HOH A 155 555 95 HOH HOH . E 5 HOH A 156 556 139 HOH HOH . E 5 HOH A 157 557 79 HOH HOH . E 5 HOH A 158 558 87 HOH HOH . E 5 HOH A 159 559 132 HOH HOH . E 5 HOH A 160 560 203 HOH HOH . E 5 HOH A 161 561 104 HOH HOH . E 5 HOH A 162 562 131 HOH HOH . E 5 HOH A 163 563 82 HOH HOH . E 5 HOH A 164 564 83 HOH HOH . E 5 HOH A 165 565 39 HOH HOH . E 5 HOH A 166 566 180 HOH HOH . E 5 HOH A 167 567 185 HOH HOH . E 5 HOH A 168 568 157 HOH HOH . E 5 HOH A 169 569 112 HOH HOH . E 5 HOH A 170 570 111 HOH HOH . E 5 HOH A 171 571 42 HOH HOH . E 5 HOH A 172 572 98 HOH HOH . E 5 HOH A 173 573 101 HOH HOH . E 5 HOH A 174 574 138 HOH HOH . E 5 HOH A 175 575 204 HOH HOH . E 5 HOH A 176 576 205 HOH HOH . E 5 HOH A 177 577 70 HOH HOH . E 5 HOH A 178 578 100 HOH HOH . E 5 HOH A 179 579 124 HOH HOH . E 5 HOH A 180 580 119 HOH HOH . E 5 HOH A 181 581 177 HOH HOH . E 5 HOH A 182 582 106 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C WPP . A . B 2 3.46 0.206 17.738 0.08 26.73 ? C WPP 301 A 1 HETATM 2 N N WPP . A . B 2 5.798 -0.632 17.981 0.08 29.24 ? N WPP 301 A 1 HETATM 3 O O WPP . A . B 2 2.57 -0.484 18.099 0.08 24.99 ? O WPP 301 A 1 HETATM 4 C CA WPP . A . B 2 4.946 0.483 18.075 0.08 28.75 ? CA WPP 301 A 1 HETATM 5 C CB WPP . A . B 2 5.178 1.539 17.075 0.08 28.62 ? CB WPP 301 A 1 HETATM 6 C CAC WPP . A . B 2 9.035 -1.383 17.75 0.08 32.93 ? CAC WPP 301 A 1 HETATM 7 C CAE WPP . A . B 2 3.176 1.928 15.544 0.08 27.52 ? CAE WPP 301 A 1 HETATM 8 C CAF WPP . A . B 2 4.608 2.269 14.859 0.08 29.07 ? CAF WPP 301 A 1 HETATM 9 C CAG WPP . A . B 2 8.008 -4.43 20.261 0.08 31.17 ? CAG WPP 301 A 1 HETATM 10 C CAH WPP . A . B 2 5.078 3.696 15.148 0.08 29.57 ? CAH WPP 301 A 1 HETATM 11 C CAI WPP . A . B 2 4.562 2.014 13.353 0.08 29.6 ? CAI WPP 301 A 1 HETATM 12 C CAJ WPP . A . B 2 8.914 -6.458 21.795 0.08 31.56 ? CAJ WPP 301 A 1 HETATM 13 C CAK WPP . A . B 2 6.189 -1.468 19.101 0.08 30.04 ? CAK WPP 301 A 1 HETATM 14 C CAL WPP . A . B 2 11.083 -8.07 24.637 0.08 36.04 ? CAL WPP 301 A 1 HETATM 15 C CAM WPP . A . B 2 7.109 -2.644 18.786 0.08 31.07 ? CAM WPP 301 A 1 HETATM 16 C CAN WPP . A . B 2 9.579 -4.109 22.157 0.08 32.47 ? CAN WPP 301 A 1 HETATM 17 C CAO WPP . A . B 2 2.299 2.99 15.93 0.08 27.17 ? CAO WPP 301 A 1 HETATM 18 C CAP WPP . A . B 2 10.511 -4.696 23.27 0.08 33.29 ? CAP WPP 301 A 1 HETATM 19 C CAQ WPP . A . B 2 11.11 -6.549 24.801 0.08 34.51 ? CAQ WPP 301 A 1 HETATM 20 C CAR WPP . A . B 2 9.026 -6.662 23.077 0.08 31.97 ? CAR WPP 301 A 1 HETATM 21 C CAS WPP . A . B 2 7.976 -2.263 17.591 0.08 32.07 ? CAS WPP 301 A 1 HETATM 22 C CAT WPP . A . B 2 7.695 -2.794 16.342 0.08 31.81 ? CAT WPP 301 A 1 HETATM 23 C CAU WPP . A . B 2 8.476 -2.449 15.251 0.08 33.07 ? CAU WPP 301 A 1 HETATM 24 C CAV WPP . A . B 2 9.536 -1.572 15.41 0.08 34.83 ? CAV WPP 301 A 1 HETATM 25 C CAW WPP . A . B 2 9.817 -1.039 16.659 0.08 34.14 ? CAW WPP 301 A 1 HETATM 26 N NAY WPP . A . B 2 7.949 -3.019 19.915 0.08 31.95 ? NAY WPP 301 A 1 HETATM 27 N NAZ WPP . A . B 2 8.826 -4.904 21.372 0.08 32.13 ? NAZ WPP 301 A 1 HETATM 28 N NBA WPP . A . B 2 10.29 -5.931 23.764 0.08 33.81 ? NBA WPP 301 A 1 HETATM 29 N NBB WPP . A . B 2 3.713 1.23 16.736 0.08 27.69 ? NBB WPP 301 A 1 HETATM 30 O OBC WPP . A . B 2 5.807 -1.249 20.199 0.08 29.61 ? OBC WPP 301 A 1 HETATM 31 O OBE WPP . A . B 2 2.094 3.993 15.197 0.08 26.24 ? OBE WPP 301 A 1 HETATM 32 O OBF WPP . A . B 2 1.679 2.878 17.019 0.08 25.77 ? OBF WPP 301 A 1 HETATM 33 O OBG WPP . A . B 2 7.38 -5.21 19.631 0.08 29.96 ? OBG WPP 301 A 1 HETATM 34 O OBH WPP . A . B 2 11.41 -4.049 23.688 0.08 33.46 ? OBH WPP 301 A 1 HETATM 35 O OBI WPP . A . B 2 9.538 -2.938 21.984 0.08 31.52 ? OBI WPP 301 A 1 HETATM 36 S SBJ WPP . A . B 2 5.599 1.326 15.506 0.08 30.11 ? SBJ WPP 301 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 36 #