data_9G9I # _model_server_result.job_id -yp0U5H2c8hfsLI9k4Z-jA _model_server_result.datetime_utc '2025-02-22 20:25:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9g9i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":802}' # _entry.id 9G9I # _exptl.entry_id 9G9I _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 506.196 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9G9I _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9G9I _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 9 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 440 A CYS 421 1_555 A SG CYS 443 A CYS 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc1 A OD2 ASP 549 A ASP 530 1_555 M MG MG . A MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc2 A OD1 ASP 603 A ASP 584 1_555 M MG MG . A MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? metalc ? metalc3 A OD2 ASP 603 A ASP 584 1_555 M MG MG . A MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc4 K O70 A1II9 . A A1II9 801 1_555 M MG MG . A MG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc5 K O01 A1II9 . A A1II9 801 1_555 N MG MG . A MG 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc6 K O74 A1II9 . A A1II9 801 1_555 N MG MG . A MG 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc7 K O70 A1II9 . A A1II9 801 1_555 N MG MG . A MG 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc8 K O05 A1II9 . A A1II9 801 1_555 N MG MG . A MG 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.73 ? hydrog WATSON-CRICK hydrog1 H N3 U 10 R U 2 1_555 J N1 A 36 T A 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 H O4 U 10 R U 2 1_555 J N6 A 36 T A 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 H N1 G 11 R G 3 1_555 J N3 C 35 T C 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 H N2 G 11 R G 3 1_555 J O2 C 35 T C 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 H O6 G 11 R G 3 1_555 J N4 C 35 T C 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 H N3 C 12 R C 4 1_555 J N1 G 34 T G 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 H N4 C 12 R C 4 1_555 J O6 G 34 T G 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 H O2 C 12 R C 4 1_555 J N2 G 34 T G 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 H N1 G 13 R G 5 1_555 J N3 C 33 T C 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 H N2 G 13 R G 5 1_555 J O2 C 33 T C 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 H O6 G 13 R G 5 1_555 J N4 C 33 T C 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'REVERSED WATSON-CRICK' hydrog12 H N1 G 15 R G 7 1_555 J O2 C 31 T C 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'REVERSED WATSON-CRICK' hydrog13 H N2 G 15 R G 7 1_555 J N3 C 31 T C 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 H N1 A 16 R A 8 1_555 J N3 U 30 T U 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 H N6 A 16 R A 8 1_555 J O4 U 30 T U 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 H N3 C 17 R C 9 1_555 J N1 G 29 T G 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 H N4 C 17 R C 9 1_555 J O6 G 29 T G 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 H O2 C 17 R C 9 1_555 J N2 G 29 T G 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 H N1 A 18 R A 10 1_555 J N3 U 28 T U 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 H N6 A 18 R A 10 1_555 J O4 U 28 T U 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 H N3 U 19 R U 11 1_555 J N1 A 27 T A 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 H O4 U 19 R U 11 1_555 J N6 A 27 T A 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 H N3 C 21 R C 13 1_555 J N1 G 25 T G 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 H N4 C 21 R C 13 1_555 J O6 G 25 T G 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 H O2 C 21 R C 13 1_555 J N2 G 25 T G 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 H N3 C 22 R C 14 1_555 J N1 G 24 T G 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 H N4 C 22 R C 14 1_555 J O6 G 24 T G 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 H O2 C 22 R C 14 1_555 J N2 G 24 T G 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 H N1 G 23 R G 15 1_555 J N3 C 23 T C 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 H N2 G 23 R G 15 1_555 J O2 C 23 T C 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 H O6 G 23 R G 15 1_555 J N4 C 23 T C 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 H N1 A 24 R A 16 1_555 J N3 U 22 T U 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 H N6 A 24 R A 16 1_555 J O4 U 22 T U 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 176 n n PG O2G ANP sing 177 n n PG O3G ANP sing 178 n n PG N3B ANP sing 179 n n O2G HOG2 ANP sing 180 n n O3G HOG3 ANP sing 181 n n PB O1B ANP doub 182 n n PB O2B ANP sing 183 n n PB N3B ANP sing 184 n n PB O3A ANP sing 185 n n O2B HOB2 ANP sing 186 n n N3B HNB1 ANP sing 187 n n PA O1A ANP doub 188 n n PA O2A ANP sing 189 n n PA O3A ANP sing 190 n n PA O5' ANP sing 191 n n O2A HOA2 ANP sing 192 n n O5' C5' ANP sing 193 n n C5' C4' ANP sing 194 n n C5' "H5'1" ANP sing 195 n n C5' "H5'2" ANP sing 196 n n C4' O4' ANP sing 197 n n C4' C3' ANP sing 198 n n C4' H4' ANP sing 199 n n O4' C1' ANP sing 200 n n C3' O3' ANP sing 201 n n C3' C2' ANP sing 202 n n C3' H3' ANP sing 203 n n O3' HO3' ANP sing 204 n n C2' O2' ANP sing 205 n n C2' C1' ANP sing 206 n n C2' H2' ANP sing 207 n n O2' HO2' ANP sing 208 n n C1' N9 ANP sing 209 n n C1' H1' ANP sing 210 n n N9 C8 ANP sing 211 n y N9 C4 ANP sing 212 n y C8 N7 ANP doub 213 n y C8 H8 ANP sing 214 n n N7 C5 ANP sing 215 n y C5 C6 ANP sing 216 n y C5 C4 ANP doub 217 n y C6 N6 ANP sing 218 n n C6 N1 ANP doub 219 n y N6 HN61 ANP sing 220 n n N6 HN62 ANP sing 221 n n N1 C2 ANP sing 222 n y C2 N3 ANP doub 223 n y C2 H2 ANP sing 224 n n N3 C4 ANP sing 225 n y # _atom_sites.entry_id 9G9I _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 8 A1II9 A 1 801 1 A1II9 LIG . L 9 ANP A 1 802 2 ANP ANP . M 10 MG A 1 803 1 MG MG . N 10 MG A 1 804 2 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . L 9 160.126 156.122 187.228 1 78.33 ? PG ANP 802 A 1 HETATM 2 O O1G ANP . . . L 9 161.607 155.922 187.415 1 70.64 ? O1G ANP 802 A 1 HETATM 3 O O2G ANP . . . L 9 159.553 154.848 186.665 1 71.6 ? O2G ANP 802 A 1 HETATM 4 O O3G ANP . . . L 9 159.496 156.364 188.572 1 75.42 ? O3G ANP 802 A 1 HETATM 5 P PB ANP . . . L 9 160.099 157.351 184.624 1 78.48 ? PB ANP 802 A 1 HETATM 6 O O1B ANP . . . L 9 159.999 158.719 184.01 1 74.93 ? O1B ANP 802 A 1 HETATM 7 O O2B ANP . . . L 9 161.291 156.5 184.288 1 76.09 ? O2B ANP 802 A 1 HETATM 8 N N3B ANP . . . L 9 159.827 157.376 186.231 1 71.9 ? N3B ANP 802 A 1 HETATM 9 P PA ANP . . . L 9 157.258 156.596 184.346 1 79.42 ? PA ANP 802 A 1 HETATM 10 O O1A ANP . . . L 9 156.609 155.431 183.675 1 73.46 ? O1A ANP 802 A 1 HETATM 11 O O2A ANP . . . L 9 157.041 156.79 185.808 1 72.14 ? O2A ANP 802 A 1 HETATM 12 O O3A ANP . . . L 9 158.838 156.528 184.072 1 83.97 ? O3A ANP 802 A 1 HETATM 13 O O5' ANP . . . L 9 156.864 157.942 183.573 1 68.23 ? O5' ANP 802 A 1 HETATM 14 C C5' ANP . . . L 9 156.839 159.174 184.327 1 64.87 ? C5' ANP 802 A 1 HETATM 15 C C4' ANP . . . L 9 156.994 160.336 183.379 1 61 ? C4' ANP 802 A 1 HETATM 16 O O4' ANP . . . L 9 155.872 160.367 182.459 1 62.29 ? O4' ANP 802 A 1 HETATM 17 C C3' ANP . . . L 9 157.021 161.727 184.022 1 61.06 ? C3' ANP 802 A 1 HETATM 18 O O3' ANP . . . L 9 158.33 162.101 184.433 1 70.56 ? O3' ANP 802 A 1 HETATM 19 C C2' ANP . . . L 9 156.496 162.593 182.878 1 59.82 ? C2' ANP 802 A 1 HETATM 20 O O2' ANP . . . L 9 157.5 162.83 181.92 1 61.61 ? O2' ANP 802 A 1 HETATM 21 C C1' ANP . . . L 9 155.406 161.691 182.31 1 60.56 ? C1' ANP 802 A 1 HETATM 22 N N9 ANP . . . L 9 154.107 161.79 182.967 1 59.29 ? N9 ANP 802 A 1 HETATM 23 C C8 ANP . . . L 9 153.831 162.094 184.278 1 57.23 ? C8 ANP 802 A 1 HETATM 24 N N7 ANP . . . L 9 152.546 162.094 184.542 1 56.76 ? N7 ANP 802 A 1 HETATM 25 C C5 ANP . . . L 9 151.945 161.771 183.332 1 54.36 ? C5 ANP 802 A 1 HETATM 26 C C6 ANP . . . L 9 150.601 161.609 182.955 1 53.46 ? C6 ANP 802 A 1 HETATM 27 N N6 ANP . . . L 9 149.579 161.767 183.79 1 56.02 ? N6 ANP 802 A 1 HETATM 28 N N1 ANP . . . L 9 150.354 161.286 181.664 1 57.09 ? N1 ANP 802 A 1 HETATM 29 C C2 ANP . . . L 9 151.391 161.135 180.83 1 60.33 ? C2 ANP 802 A 1 HETATM 30 N N3 ANP . . . L 9 152.692 161.259 181.074 1 61.85 ? N3 ANP 802 A 1 HETATM 31 C C4 ANP . . . L 9 152.9 161.585 182.358 1 58.64 ? C4 ANP 802 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #