data_9G9J # _model_server_result.job_id Xd5SQb2o0RqHYuwN8IE3Lg _model_server_result.datetime_utc '2025-02-22 20:45:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9g9j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":802}' # _entry.id 9G9J # _exptl.entry_id 9G9J _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 506.196 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9G9J _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9G9J _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details nonameric _pdbx_struct_assembly.oligomeric_count 9 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 427 A CYS 407 1_555 A SG CYS 440 A CYS 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc1 A OD2 ASP 549 A ASP 529 1_555 L MN MN . A MN 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc2 A OD1 ASP 549 A ASP 529 1_555 M MN MN . A MN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc3 A O ILE 550 A ILE 530 1_555 M MN MN . A MN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc4 A OD2 ASP 603 A ASP 583 1_555 L MN MN . A MN 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc5 A OD1 ASP 603 A ASP 583 1_555 M MN MN . A MN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc6 A OD2 ASP 603 A ASP 583 1_555 M MN MN . A MN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? metalc ? metalc7 J O73 A1II9 . A A1II9 801 1_555 M MN MN . A MN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc8 J O70 A1II9 . A A1II9 801 1_555 M MN MN . A MN 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 176 n n PG O2G ANP sing 177 n n PG O3G ANP sing 178 n n PG N3B ANP sing 179 n n O2G HOG2 ANP sing 180 n n O3G HOG3 ANP sing 181 n n PB O1B ANP doub 182 n n PB O2B ANP sing 183 n n PB N3B ANP sing 184 n n PB O3A ANP sing 185 n n O2B HOB2 ANP sing 186 n n N3B HNB1 ANP sing 187 n n PA O1A ANP doub 188 n n PA O2A ANP sing 189 n n PA O3A ANP sing 190 n n PA O5' ANP sing 191 n n O2A HOA2 ANP sing 192 n n O5' C5' ANP sing 193 n n C5' C4' ANP sing 194 n n C5' "H5'1" ANP sing 195 n n C5' "H5'2" ANP sing 196 n n C4' O4' ANP sing 197 n n C4' C3' ANP sing 198 n n C4' H4' ANP sing 199 n n O4' C1' ANP sing 200 n n C3' O3' ANP sing 201 n n C3' C2' ANP sing 202 n n C3' H3' ANP sing 203 n n O3' HO3' ANP sing 204 n n C2' O2' ANP sing 205 n n C2' C1' ANP sing 206 n n C2' H2' ANP sing 207 n n O2' HO2' ANP sing 208 n n C1' N9 ANP sing 209 n n C1' H1' ANP sing 210 n n N9 C8 ANP sing 211 n y N9 C4 ANP sing 212 n y C8 N7 ANP doub 213 n y C8 H8 ANP sing 214 n n N7 C5 ANP sing 215 n y C5 C6 ANP sing 216 n y C5 C4 ANP doub 217 n y C6 N6 ANP sing 218 n n C6 N1 ANP doub 219 n y N6 HN61 ANP sing 220 n n N6 HN62 ANP sing 221 n n N1 C2 ANP sing 222 n y C2 N3 ANP doub 223 n y C2 H2 ANP sing 224 n n N3 C4 ANP sing 225 n y # _atom_sites.entry_id 9G9J _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 7 A1II9 A 1 801 1 A1II9 LIG . K 8 ANP A 1 802 2 ANP ANP . L 9 MN A 1 803 1 MN MN . M 9 MN A 1 804 2 MN MN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . K 8 160.909 155.348 187.64 1 55.22 ? PG ANP 802 A 1 HETATM 2 O O1G ANP . . . K 8 162.369 155.065 187.412 1 44.39 ? O1G ANP 802 A 1 HETATM 3 O O2G ANP . . . K 8 160.099 154.29 186.94 1 47.65 ? O2G ANP 802 A 1 HETATM 4 O O3G ANP . . . K 8 160.635 155.249 189.114 1 50.25 ? O3G ANP 802 A 1 HETATM 5 P PB ANP . . . K 8 160.67 157.329 185.535 1 46.12 ? PB ANP 802 A 1 HETATM 6 O O1B ANP . . . K 8 160.437 158.807 185.407 1 47.29 ? O1B ANP 802 A 1 HETATM 7 O O2B ANP . . . K 8 161.877 156.734 184.867 1 51.96 ? O2B ANP 802 A 1 HETATM 8 N N3B ANP . . . K 8 160.526 156.833 187.083 1 47.21 ? N3B ANP 802 A 1 HETATM 9 P PA ANP . . . K 8 157.871 156.52 185.153 1 50.58 ? PA ANP 802 A 1 HETATM 10 O O1A ANP . . . K 8 157.364 155.203 184.669 1 37.34 ? O1A ANP 802 A 1 HETATM 11 O O2A ANP . . . K 8 157.696 156.889 186.585 1 51.28 ? O2A ANP 802 A 1 HETATM 12 O O3A ANP . . . K 8 159.432 156.619 184.805 1 49.99 ? O3A ANP 802 A 1 HETATM 13 O O5' ANP . . . K 8 157.267 157.681 184.236 1 35.11 ? O5' ANP 802 A 1 HETATM 14 C C5' ANP . . . K 8 157.343 159.033 184.732 1 33.67 ? C5' ANP 802 A 1 HETATM 15 C C4' ANP . . . K 8 157.636 159.958 183.579 1 31.9 ? C4' ANP 802 A 1 HETATM 16 O O4' ANP . . . K 8 156.513 159.948 182.66 1 34.09 ? O4' ANP 802 A 1 HETATM 17 C C3' ANP . . . K 8 157.863 161.429 183.95 1 32.04 ? C3' ANP 802 A 1 HETATM 18 O O3' ANP . . . K 8 159.243 161.708 184.149 1 37.59 ? O3' ANP 802 A 1 HETATM 19 C C2' ANP . . . K 8 157.286 162.161 182.739 1 28.76 ? C2' ANP 802 A 1 HETATM 20 O O2' ANP . . . K 8 158.205 162.195 181.673 1 28.35 ? O2' ANP 802 A 1 HETATM 21 C C1' ANP . . . K 8 156.101 161.268 182.39 1 28.77 ? C1' ANP 802 A 1 HETATM 22 N N9 ANP . . . K 8 154.863 161.524 183.123 1 25.98 ? N9 ANP 802 A 1 HETATM 23 C C8 ANP . . . K 8 154.691 161.82 184.451 1 24.69 ? C8 ANP 802 A 1 HETATM 24 N N7 ANP . . . K 8 153.434 162.003 184.777 1 24.05 ? N7 ANP 802 A 1 HETATM 25 C C5 ANP . . . K 8 152.741 161.826 183.589 1 22.84 ? C5 ANP 802 A 1 HETATM 26 C C6 ANP . . . K 8 151.375 161.89 183.267 1 23.11 ? C6 ANP 802 A 1 HETATM 27 N N6 ANP . . . K 8 150.418 162.16 184.148 1 24.72 ? N6 ANP 802 A 1 HETATM 28 N N1 ANP . . . K 8 151.035 161.668 181.976 1 26.95 ? N1 ANP 802 A 1 HETATM 29 C C2 ANP . . . K 8 151.999 161.384 181.093 1 30.64 ? C2 ANP 802 A 1 HETATM 30 N N3 ANP . . . K 8 153.312 161.3 181.281 1 32.92 ? N3 ANP 802 A 1 HETATM 31 C C4 ANP . . . K 8 153.615 161.533 182.566 1 27.4 ? C4 ANP 802 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #