data_9GAC # _model_server_result.job_id SYtX6dPbQsV5Ey162G3JDA _model_server_result.datetime_utc '2024-11-22 04:55:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9gac # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":596}' # _entry.id 9GAC # _exptl.entry_id 9GAC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 75.067 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 80.8 _cell.angle_beta 90.5 _cell.angle_gamma 105.1 _cell.entry_id 9GAC _cell.length_a 46.3 _cell.length_b 52.8 _cell.length_c 62.4 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9GAC _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C2 H5 N O2' _chem_comp.formula_weight 75.067 _chem_comp.id GLY _chem_comp.mon_nstd_flag y _chem_comp.name GLYCINE _chem_comp.type 'peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA GLY sing 120 n n N H GLY sing 121 n n N H2 GLY sing 122 n n CA C GLY sing 123 n n CA HA2 GLY sing 124 n n CA HA3 GLY sing 125 n n C O GLY doub 126 n n C OXT GLY sing 127 n n OXT HXT GLY sing 128 n n # _atom_sites.entry_id 9GAC _atom_sites.fract_transf_matrix[1][1] 0.021598 _atom_sites.fract_transf_matrix[1][2] 0.005828 _atom_sites.fract_transf_matrix[1][3] -0.000773 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019617 _atom_sites.fract_transf_matrix[2][3] -0.003246 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016244 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GLY A 1 296 296 GLY GLY . D 2 GLY C 1 596 596 GLY GLY . E 3 HOH A 1 601 601 HOH HOH . E 3 HOH A 2 602 602 HOH HOH . E 3 HOH A 3 603 603 HOH HOH . E 3 HOH A 4 604 604 HOH HOH . E 3 HOH A 5 607 607 HOH HOH . E 3 HOH A 6 609 609 HOH HOH . E 3 HOH A 7 612 612 HOH HOH . E 3 HOH A 8 615 615 HOH HOH . E 3 HOH A 9 616 616 HOH HOH . E 3 HOH A 10 617 617 HOH HOH . E 3 HOH A 11 619 619 HOH HOH . E 3 HOH A 12 624 624 HOH HOH . E 3 HOH A 13 625 625 HOH HOH . E 3 HOH A 14 627 627 HOH HOH . E 3 HOH A 15 629 629 HOH HOH . E 3 HOH A 16 630 630 HOH HOH . E 3 HOH A 17 631 631 HOH HOH . E 3 HOH A 18 636 636 HOH HOH . E 3 HOH A 19 642 642 HOH HOH . E 3 HOH A 20 643 643 HOH HOH . E 3 HOH A 21 644 644 HOH HOH . E 3 HOH A 22 646 646 HOH HOH . E 3 HOH A 23 647 647 HOH HOH . E 3 HOH A 24 648 648 HOH HOH . E 3 HOH A 25 650 650 HOH HOH . E 3 HOH A 26 652 652 HOH HOH . E 3 HOH A 27 655 655 HOH HOH . E 3 HOH A 28 656 656 HOH HOH . E 3 HOH A 29 657 657 HOH HOH . E 3 HOH A 30 660 660 HOH HOH . E 3 HOH A 31 663 663 HOH HOH . E 3 HOH A 32 666 666 HOH HOH . E 3 HOH A 33 669 669 HOH HOH . E 3 HOH A 34 673 673 HOH HOH . E 3 HOH A 35 674 674 HOH HOH . E 3 HOH A 36 675 675 HOH HOH . E 3 HOH A 37 677 677 HOH HOH . E 3 HOH A 38 678 678 HOH HOH . E 3 HOH A 39 681 681 HOH HOH . E 3 HOH A 40 684 684 HOH HOH . E 3 HOH A 41 685 685 HOH HOH . E 3 HOH A 42 686 686 HOH HOH . E 3 HOH A 43 687 687 HOH HOH . E 3 HOH A 44 690 690 HOH HOH . E 3 HOH A 45 691 691 HOH HOH . E 3 HOH A 46 693 693 HOH HOH . E 3 HOH A 47 696 696 HOH HOH . E 3 HOH A 48 698 698 HOH HOH . E 3 HOH A 49 699 699 HOH HOH . E 3 HOH A 50 700 700 HOH HOH . E 3 HOH A 51 701 701 HOH HOH . E 3 HOH A 52 704 704 HOH HOH . E 3 HOH A 53 705 705 HOH HOH . E 3 HOH A 54 709 709 HOH HOH . E 3 HOH A 55 710 710 HOH HOH . E 3 HOH A 56 711 711 HOH HOH . E 3 HOH A 57 712 712 HOH HOH . E 3 HOH A 58 714 714 HOH HOH . E 3 HOH A 59 715 715 HOH HOH . E 3 HOH A 60 719 719 HOH HOH . E 3 HOH A 61 720 720 HOH HOH . E 3 HOH A 62 723 723 HOH HOH . E 3 HOH A 63 725 725 HOH HOH . E 3 HOH A 64 726 726 HOH HOH . E 3 HOH A 65 730 730 HOH HOH . E 3 HOH A 66 731 731 HOH HOH . E 3 HOH A 67 733 733 HOH HOH . E 3 HOH A 68 734 734 HOH HOH . E 3 HOH A 69 739 739 HOH HOH . E 3 HOH A 70 741 741 HOH HOH . E 3 HOH A 71 742 742 HOH HOH . E 3 HOH A 72 744 744 HOH HOH . E 3 HOH A 73 745 745 HOH HOH . E 3 HOH A 74 746 746 HOH HOH . E 3 HOH A 75 748 748 HOH HOH . E 3 HOH A 76 750 750 HOH HOH . F 3 HOH C 1 605 605 HOH HOH . F 3 HOH C 2 606 606 HOH HOH . F 3 HOH C 3 608 608 HOH HOH . F 3 HOH C 4 610 610 HOH HOH . F 3 HOH C 5 611 611 HOH HOH . F 3 HOH C 6 613 613 HOH HOH . F 3 HOH C 7 614 614 HOH HOH . F 3 HOH C 8 618 618 HOH HOH . F 3 HOH C 9 620 620 HOH HOH . F 3 HOH C 10 621 621 HOH HOH . F 3 HOH C 11 622 622 HOH HOH . F 3 HOH C 12 623 623 HOH HOH . F 3 HOH C 13 626 626 HOH HOH . F 3 HOH C 14 628 628 HOH HOH . F 3 HOH C 15 632 632 HOH HOH . F 3 HOH C 16 633 633 HOH HOH . F 3 HOH C 17 634 634 HOH HOH . F 3 HOH C 18 635 635 HOH HOH . F 3 HOH C 19 637 637 HOH HOH . F 3 HOH C 20 638 638 HOH HOH . F 3 HOH C 21 639 639 HOH HOH . F 3 HOH C 22 640 640 HOH HOH . F 3 HOH C 23 641 641 HOH HOH . F 3 HOH C 24 645 645 HOH HOH . F 3 HOH C 25 649 649 HOH HOH . F 3 HOH C 26 651 651 HOH HOH . F 3 HOH C 27 653 653 HOH HOH . F 3 HOH C 28 654 654 HOH HOH . F 3 HOH C 29 658 658 HOH HOH . F 3 HOH C 30 659 659 HOH HOH . F 3 HOH C 31 661 661 HOH HOH . F 3 HOH C 32 662 662 HOH HOH . F 3 HOH C 33 664 664 HOH HOH . F 3 HOH C 34 665 665 HOH HOH . F 3 HOH C 35 667 667 HOH HOH . F 3 HOH C 36 668 668 HOH HOH . F 3 HOH C 37 670 670 HOH HOH . F 3 HOH C 38 671 671 HOH HOH . F 3 HOH C 39 672 672 HOH HOH . F 3 HOH C 40 676 676 HOH HOH . F 3 HOH C 41 679 679 HOH HOH . F 3 HOH C 42 680 680 HOH HOH . F 3 HOH C 43 682 682 HOH HOH . F 3 HOH C 44 683 683 HOH HOH . F 3 HOH C 45 688 688 HOH HOH . F 3 HOH C 46 689 689 HOH HOH . F 3 HOH C 47 692 692 HOH HOH . F 3 HOH C 48 694 694 HOH HOH . F 3 HOH C 49 695 695 HOH HOH . F 3 HOH C 50 697 697 HOH HOH . F 3 HOH C 51 702 702 HOH HOH . F 3 HOH C 52 703 703 HOH HOH . F 3 HOH C 53 706 706 HOH HOH . F 3 HOH C 54 707 707 HOH HOH . F 3 HOH C 55 708 708 HOH HOH . F 3 HOH C 56 713 713 HOH HOH . F 3 HOH C 57 716 716 HOH HOH . F 3 HOH C 58 717 717 HOH HOH . F 3 HOH C 59 718 718 HOH HOH . F 3 HOH C 60 721 721 HOH HOH . F 3 HOH C 61 722 722 HOH HOH . F 3 HOH C 62 724 724 HOH HOH . F 3 HOH C 63 727 727 HOH HOH . F 3 HOH C 64 728 728 HOH HOH . F 3 HOH C 65 729 729 HOH HOH . F 3 HOH C 66 732 732 HOH HOH . F 3 HOH C 67 735 735 HOH HOH . F 3 HOH C 68 736 736 HOH HOH . F 3 HOH C 69 737 737 HOH HOH . F 3 HOH C 70 738 738 HOH HOH . F 3 HOH C 71 740 740 HOH HOH . F 3 HOH C 72 743 743 HOH HOH . F 3 HOH C 73 747 747 HOH HOH . F 3 HOH C 74 749 749 HOH HOH . F 3 HOH C 75 751 751 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N GLY . . . D 2 15.382 28.906 25.249 1 5.64 ? N GLY 596 C 1 HETATM 2 C CA GLY . . . D 2 15.675 30.224 24.794 1 5.37 ? CA GLY 596 C 1 HETATM 3 C C GLY . . . D 2 14.909 31.156 25.719 1 6.17 ? C GLY 596 C 1 HETATM 4 O O GLY . . . D 2 15.24 32.325 25.789 1 7.37 ? O GLY 596 C 1 HETATM 5 O OXT GLY . . . D 2 13.956 30.763 26.372 1 6.81 ? OXT GLY 596 C 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #