data_9GAN # _model_server_result.job_id HuPqjnuVJvd9bpNTucogqw _model_server_result.datetime_utc '2025-07-08 07:05:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9gan # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":101}' # _entry.id 9GAN # _exptl.entry_id 9GAN _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 493.505 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-[3,6-bis(oxidanylidene)-4,5-dihydroxanthen-9-yl]-4-[3-[(2R)-2-oxidanylpropoxy]propylcarbamoyl]benzoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9GAN _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9GAN _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 1 2 A,B,C,D,E 1 3 A,B,C,D,E 1 4 A,B,C,D,E 1 5 A,B,C,D,E 1 6 A,B,C,D,E 1 7 A,B,C,D,E 1 8 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? -0.934537 0.190843 -0.300367 -0.187575 -0.981437 -0.039966 -0.302418 0.018992 0.952986 456.75411 504.31277 151.10743 3 'point symmetry operation' ? ? -0.568743 -0.784028 -0.248661 0.786678 -0.606775 0.113854 -0.240146 -0.130862 0.961876 587.67849 160.39386 143.90389 4 'point symmetry operation' ? ? 0.456575 -0.885175 -0.089464 0.886093 0.4434 0.135036 -0.079862 -0.140928 0.986794 343.28573 -106.97569 78.64119 5 'point symmetry operation' ? ? 0.456575 0.886093 -0.079862 -0.885175 0.443401 -0.140928 -0.089464 0.135036 0.986794 -55.66451 362.38435 -32.4452 6 'point symmetry operation' ? ? -0.568743 0.786677 -0.240146 -0.784028 -0.606775 -0.130861 -0.24866 0.113854 0.961876 242.61796 576.91066 -10.54688 7 'point symmetry operation' ? ? -0.934537 -0.187575 -0.302417 0.190842 -0.981437 0.018992 -0.300366 -0.039965 0.952986 567.14763 404.91299 13.34554 8 'point symmetry operation' ? ? -0.233593 -0.952095 -0.197355 0.954179 -0.2635 0.141812 -0.187021 -0.155186 0.970021 561.00563 38.01643 -15.33775 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id O3' _struct_conn.ptnr1_label_comp_id C _struct_conn.ptnr1_label_seq_id 6 _struct_conn.ptnr1_auth_asym_id C _struct_conn.ptnr1_auth_comp_id C _struct_conn.ptnr1_auth_seq_id 12 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id E _struct_conn.ptnr2_label_atom_id C1 _struct_conn.ptnr2_label_comp_id A1IJK _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id C _struct_conn.ptnr2_auth_comp_id A1IJK _struct_conn.ptnr2_auth_seq_id 101 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.433 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C27 H27 N O8' _chem_comp.formula_weight 493.505 _chem_comp.id A1IJK _chem_comp.mon_nstd_flag . _chem_comp.name '2-[3,6-bis(oxidanylidene)-4,5-dihydroxanthen-9-yl]-4-[3-[(2R)-2-oxidanylpropoxy]propylcarbamoyl]benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 O5 A1IJK sing 1 n n C2 C1 A1IJK sing 2 n n C2 C3 A1IJK sing 3 n n O19 C17 A1IJK doub 4 n n C13 C12 A1IJK doub 5 n y C13 C14 A1IJK sing 6 n y C12 C11 A1IJK sing 7 n y O4 C3 A1IJK sing 8 n n O4 C6 A1IJK sing 9 n n N9 C8 A1IJK sing 10 n n N9 C10 A1IJK sing 11 n n C8 C7 A1IJK sing 12 n n C17 C14 A1IJK sing 13 n n C17 O18 A1IJK sing 14 n n C14 C15 A1IJK doub 15 n y C11 C10 A1IJK sing 16 n n C11 C16 A1IJK doub 17 n y C10 O26 A1IJK doub 18 n n C6 C7 A1IJK sing 19 n n C15 C16 A1IJK sing 20 n y C15 C20 A1IJK sing 21 n n C29 C30 A1IJK doub 22 n n C29 C28 A1IJK sing 23 n n C30 C21 A1IJK sing 24 n n C20 C21 A1IJK doub 25 n y C20 C25 A1IJK sing 26 n y C21 C22 A1IJK sing 27 n y C28 O35 A1IJK doub 28 n n C28 C27 A1IJK sing 29 n n C22 C27 A1IJK sing 30 n n C22 O23 A1IJK doub 31 n y C25 C34 A1IJK sing 32 n n C25 C24 A1IJK doub 33 n y C34 C33 A1IJK doub 34 n n O23 C24 A1IJK sing 35 n y C24 C31 A1IJK sing 36 n n C33 C32 A1IJK sing 37 n n C31 C32 A1IJK sing 38 n n C32 O36 A1IJK doub 39 n n C1 H1 A1IJK sing 40 n n C1 H2 A1IJK sing 41 n n C1 H3 A1IJK sing 42 n n C2 H4 A1IJK sing 43 n n C3 H5 A1IJK sing 44 n n C3 H6 A1IJK sing 45 n n C6 H7 A1IJK sing 46 n n C6 H8 A1IJK sing 47 n n C7 H9 A1IJK sing 48 n n C7 H10 A1IJK sing 49 n n O5 H11 A1IJK sing 50 n n C8 H12 A1IJK sing 51 n n C8 H13 A1IJK sing 52 n n N9 H14 A1IJK sing 53 n n C33 H15 A1IJK sing 54 n n C34 H16 A1IJK sing 55 n n C12 H17 A1IJK sing 56 n n C13 H18 A1IJK sing 57 n n C16 H19 A1IJK sing 58 n n C27 H20 A1IJK sing 59 n n C27 H21 A1IJK sing 60 n n C29 H22 A1IJK sing 61 n n C30 H23 A1IJK sing 62 n n C31 H24 A1IJK sing 63 n n C31 H25 A1IJK sing 64 n n O18 H26 A1IJK sing 65 n n O23 H27 A1IJK sing 66 n n # _atom_sites.entry_id 9GAN _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id E _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id A1IJK _pdbx_nonpoly_scheme.pdb_strand_id C _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 12 _pdbx_nonpoly_scheme.pdb_mon_id A1IJK _pdbx_nonpoly_scheme.auth_mon_id 6FM _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 A1IJK . . . E 3 221.107 206.313 213.911 1 93.4 ? C1 A1IJK 101 C 1 HETATM 2 C C2 A1IJK . . . E 3 221.26 207.801 213.716 1 102.89 ? C2 A1IJK 101 C 1 HETATM 3 C C3 A1IJK . . . E 3 222.157 208.424 214.762 1 112.47 ? C3 A1IJK 101 C 1 HETATM 4 C C6 A1IJK . . . E 3 222.692 210.455 215.855 1 112.53 ? C6 A1IJK 101 C 1 HETATM 5 C C7 A1IJK . . . E 3 224.179 210.163 215.867 1 111.57 ? C7 A1IJK 101 C 1 HETATM 6 O O4 A1IJK . . . E 3 222.07 209.844 214.729 1 120.55 ? O4 A1IJK 101 C 1 HETATM 7 O O5 A1IJK . . . E 3 219.97 208.409 213.765 1 102.25 ? O5 A1IJK 101 C 1 HETATM 8 C C8 A1IJK . . . E 3 224.994 211.068 214.96 1 112.68 ? C8 A1IJK 101 C 1 HETATM 9 C C10 A1IJK . . . E 3 227.294 211.232 215.77 1 105.7 ? C10 A1IJK 101 C 1 HETATM 10 N N9 A1IJK . . . E 3 226.4 210.686 214.944 1 111.11 ? N9 A1IJK 101 C 1 HETATM 11 C C33 A1IJK . . . E 3 230.041 208.064 220.496 1 119.37 ? C33 A1IJK 101 C 1 HETATM 12 C C34 A1IJK . . . E 3 230.339 208.715 219.336 1 114.73 ? C34 A1IJK 101 C 1 HETATM 13 C C11 A1IJK . . . E 3 228.682 210.657 215.746 1 105.21 ? C11 A1IJK 101 C 1 HETATM 14 C C12 A1IJK . . . E 3 229.128 209.973 214.625 1 105.12 ? C12 A1IJK 101 C 1 HETATM 15 C C13 A1IJK . . . E 3 230.399 209.436 214.596 1 105.21 ? C13 A1IJK 101 C 1 HETATM 16 C C14 A1IJK . . . E 3 231.255 209.54 215.687 1 104.6 ? C14 A1IJK 101 C 1 HETATM 17 C C15 A1IJK . . . E 3 230.805 210.218 216.839 1 106.81 ? C15 A1IJK 101 C 1 HETATM 18 C C16 A1IJK . . . E 3 229.524 210.765 216.849 1 106.56 ? C16 A1IJK 101 C 1 HETATM 19 C C17 A1IJK . . . E 3 232.623 208.909 215.56 1 107.51 ? C17 A1IJK 101 C 1 HETATM 20 C C20 A1IJK . . . E 3 231.661 210.387 218.055 1 110.17 ? C20 A1IJK 101 C 1 HETATM 21 C C21 A1IJK . . . E 3 232.857 211.228 218.061 1 107.19 ? C21 A1IJK 101 C 1 HETATM 22 C C22 A1IJK . . . E 3 233.598 211.371 219.263 1 105.27 ? C22 A1IJK 101 C 1 HETATM 23 C C24 A1IJK . . . E 3 232.122 209.919 220.449 1 112.74 ? C24 A1IJK 101 C 1 HETATM 24 C C25 A1IJK . . . E 3 231.356 209.669 219.289 1 113.07 ? C25 A1IJK 101 C 1 HETATM 25 C C27 A1IJK . . . E 3 234.748 212.142 219.283 1 103.15 ? C27 A1IJK 101 C 1 HETATM 26 C C28 A1IJK . . . E 3 235.203 212.811 218.087 1 105.93 ? C28 A1IJK 101 C 1 HETATM 27 C C29 A1IJK . . . E 3 234.427 212.656 216.897 1 103.81 ? C29 A1IJK 101 C 1 HETATM 28 C C30 A1IJK . . . E 3 233.275 211.885 216.902 1 106.18 ? C30 A1IJK 101 C 1 HETATM 29 C C31 A1IJK . . . E 3 231.762 209.304 221.643 1 114.18 ? C31 A1IJK 101 C 1 HETATM 30 C C32 A1IJK . . . E 3 230.694 208.359 221.676 1 120.02 ? C32 A1IJK 101 C 1 HETATM 31 O O18 A1IJK . . . E 3 233.294 208.727 216.59 1 110.57 ? O18 A1IJK 101 C 1 HETATM 32 O O19 A1IJK . . . E 3 233.004 208.6 214.417 1 106.14 ? O19 A1IJK 101 C 1 HETATM 33 O O23 A1IJK . . . E 3 233.21 210.755 220.427 1 110.29 ? O23 A1IJK 101 C 1 HETATM 34 O O26 A1IJK . . . E 3 227.008 212.163 216.52 1 99.24 ? O26 A1IJK 101 C 1 HETATM 35 O O35 A1IJK . . . E 3 236.231 213.498 218.093 1 115.37 ? O35 A1IJK 101 C 1 HETATM 36 O O36 A1IJK . . . E 3 230.366 207.81 222.735 1 122.57 ? O36 A1IJK 101 C 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 221 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 36 #