data_9GAO # _model_server_result.job_id 2Jr4Esf1p3kJ8toJ9KSibQ _model_server_result.datetime_utc '2024-11-08 06:03:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9gao # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 9GAO # _exptl.entry_id 9GAO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 276.288 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[4-[(3~{R})-2,6-bis(oxidanylidene)piperidin-3-yl]phenoxy]-~{N}-methyl-ethanamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9GAO _cell.length_a 53.507 _cell.length_b 94.862 _cell.length_c 147.952 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9GAO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 226 A CYS 323 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc2 A SG CYS 229 A CYS 326 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc3 A SG CYS 294 A CYS 391 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc4 A SG CYS 297 A CYS 394 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc5 B SG CYS 226 C CYS 323 1_555 F ZN ZN . C ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc6 B SG CYS 229 C CYS 326 1_555 F ZN ZN . C ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc7 B SG CYS 294 C CYS 391 1_555 F ZN ZN . C ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc8 B SG CYS 297 C CYS 394 1_555 F ZN ZN . C ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? # _chem_comp.formula 'C14 H16 N2 O4' _chem_comp.formula_weight 276.288 _chem_comp.id A1IJM _chem_comp.mon_nstd_flag . _chem_comp.name 2-[4-[(3~{R})-2,6-bis(oxidanylidene)piperidin-3-yl]phenoxy]-~{N}-methyl-ethanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N02 C01 A1IJM sing 1 n n C03 N02 A1IJM sing 2 n n O04 C03 A1IJM doub 3 n n C05 C03 A1IJM sing 4 n n O06 C05 A1IJM sing 5 n n C07 O06 A1IJM sing 6 n n C08 C07 A1IJM doub 7 n y C09 C08 A1IJM sing 8 n y C10 C09 A1IJM doub 9 n y C12 C11 A1IJM doub 10 n y C11 C10 A1IJM sing 11 n y C13 C10 A1IJM sing 12 n n C14 C13 A1IJM sing 13 n n C15 C14 A1IJM sing 14 n n C16 C15 A1IJM sing 15 n n O17 C16 A1IJM doub 16 n n N18 C16 A1IJM sing 17 n n C19 N18 A1IJM sing 18 n n O20 C19 A1IJM doub 19 n n C07 C12 A1IJM sing 20 n y C13 C19 A1IJM sing 21 n n C13 H131 A1IJM sing 22 n n C15 H152 A1IJM sing 23 n n C15 H151 A1IJM sing 24 n n C01 H013 A1IJM sing 25 n n C01 H012 A1IJM sing 26 n n C01 H011 A1IJM sing 27 n n C05 H051 A1IJM sing 28 n n C05 H052 A1IJM sing 29 n n C08 H081 A1IJM sing 30 n n C09 H091 A1IJM sing 31 n n C11 H111 A1IJM sing 32 n n C12 H121 A1IJM sing 33 n n C14 H142 A1IJM sing 34 n n C14 H141 A1IJM sing 35 n n N02 H021 A1IJM sing 36 n n N18 H181 A1IJM sing 37 n n # _atom_sites.entry_id 9GAO _atom_sites.fract_transf_matrix[1][1] 0.018689 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010542 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006759 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 A1IJM A 1 501 501 A1IJM LIG . D 3 ZN A 1 502 1 ZN ZN . E 2 A1IJM C 1 501 501 A1IJM LIG . F 3 ZN C 1 502 1 ZN ZN . G 4 HOH A 1 601 20 HOH HOH . G 4 HOH A 2 602 134 HOH HOH . G 4 HOH A 3 603 6 HOH HOH . G 4 HOH A 4 604 139 HOH HOH . G 4 HOH A 5 605 56 HOH HOH . G 4 HOH A 6 606 23 HOH HOH . G 4 HOH A 7 607 120 HOH HOH . G 4 HOH A 8 608 102 HOH HOH . G 4 HOH A 9 609 59 HOH HOH . G 4 HOH A 10 610 12 HOH HOH . G 4 HOH A 11 611 51 HOH HOH . G 4 HOH A 12 612 8 HOH HOH . G 4 HOH A 13 613 48 HOH HOH . G 4 HOH A 14 614 100 HOH HOH . G 4 HOH A 15 615 136 HOH HOH . G 4 HOH A 16 616 10 HOH HOH . G 4 HOH A 17 617 21 HOH HOH . G 4 HOH A 18 618 30 HOH HOH . G 4 HOH A 19 619 103 HOH HOH . G 4 HOH A 20 620 99 HOH HOH . G 4 HOH A 21 621 141 HOH HOH . G 4 HOH A 22 622 29 HOH HOH . G 4 HOH A 23 623 49 HOH HOH . G 4 HOH A 24 624 72 HOH HOH . G 4 HOH A 25 625 71 HOH HOH . G 4 HOH A 26 626 38 HOH HOH . G 4 HOH A 27 627 104 HOH HOH . G 4 HOH A 28 628 46 HOH HOH . G 4 HOH A 29 629 84 HOH HOH . G 4 HOH A 30 630 129 HOH HOH . G 4 HOH A 31 631 44 HOH HOH . G 4 HOH A 32 632 65 HOH HOH . G 4 HOH A 33 633 39 HOH HOH . G 4 HOH A 34 634 119 HOH HOH . G 4 HOH A 35 635 76 HOH HOH . G 4 HOH A 36 636 34 HOH HOH . G 4 HOH A 37 637 135 HOH HOH . G 4 HOH A 38 638 52 HOH HOH . G 4 HOH A 39 639 58 HOH HOH . G 4 HOH A 40 640 33 HOH HOH . G 4 HOH A 41 641 19 HOH HOH . G 4 HOH A 42 642 54 HOH HOH . G 4 HOH A 43 643 77 HOH HOH . G 4 HOH A 44 644 90 HOH HOH . G 4 HOH A 45 645 53 HOH HOH . G 4 HOH A 46 646 62 HOH HOH . H 4 HOH C 1 601 92 HOH HOH . H 4 HOH C 2 602 3 HOH HOH . H 4 HOH C 3 603 130 HOH HOH . H 4 HOH C 4 604 87 HOH HOH . H 4 HOH C 5 605 13 HOH HOH . H 4 HOH C 6 606 142 HOH HOH . H 4 HOH C 7 607 108 HOH HOH . H 4 HOH C 8 608 57 HOH HOH . H 4 HOH C 9 609 112 HOH HOH . H 4 HOH C 10 610 9 HOH HOH . H 4 HOH C 11 611 47 HOH HOH . H 4 HOH C 12 612 138 HOH HOH . H 4 HOH C 13 613 37 HOH HOH . H 4 HOH C 14 614 40 HOH HOH . H 4 HOH C 15 615 105 HOH HOH . H 4 HOH C 16 616 2 HOH HOH . H 4 HOH C 17 617 80 HOH HOH . H 4 HOH C 18 618 140 HOH HOH . H 4 HOH C 19 619 68 HOH HOH . H 4 HOH C 20 620 121 HOH HOH . H 4 HOH C 21 621 28 HOH HOH . H 4 HOH C 22 622 4 HOH HOH . H 4 HOH C 23 623 115 HOH HOH . H 4 HOH C 24 624 16 HOH HOH . H 4 HOH C 25 625 11 HOH HOH . H 4 HOH C 26 626 114 HOH HOH . H 4 HOH C 27 627 73 HOH HOH . H 4 HOH C 28 628 25 HOH HOH . H 4 HOH C 29 629 109 HOH HOH . H 4 HOH C 30 630 78 HOH HOH . H 4 HOH C 31 631 143 HOH HOH . H 4 HOH C 32 632 137 HOH HOH . H 4 HOH C 33 633 61 HOH HOH . H 4 HOH C 34 634 22 HOH HOH . H 4 HOH C 35 635 132 HOH HOH . H 4 HOH C 36 636 45 HOH HOH . H 4 HOH C 37 637 144 HOH HOH . H 4 HOH C 38 638 24 HOH HOH . H 4 HOH C 39 639 79 HOH HOH . H 4 HOH C 40 640 107 HOH HOH . H 4 HOH C 41 641 97 HOH HOH . H 4 HOH C 42 642 145 HOH HOH . H 4 HOH C 43 643 35 HOH HOH . H 4 HOH C 44 644 66 HOH HOH . H 4 HOH C 45 645 81 HOH HOH . H 4 HOH C 46 646 122 HOH HOH . H 4 HOH C 47 647 26 HOH HOH . H 4 HOH C 48 648 123 HOH HOH . H 4 HOH C 49 649 27 HOH HOH . H 4 HOH C 50 650 133 HOH HOH . H 4 HOH C 51 651 36 HOH HOH . H 4 HOH C 52 652 55 HOH HOH . H 4 HOH C 53 653 91 HOH HOH . H 4 HOH C 54 654 31 HOH HOH . H 4 HOH C 55 655 85 HOH HOH . H 4 HOH C 56 656 43 HOH HOH . H 4 HOH C 57 657 18 HOH HOH . H 4 HOH C 58 658 70 HOH HOH . H 4 HOH C 59 659 110 HOH HOH . H 4 HOH C 60 660 75 HOH HOH . H 4 HOH C 61 661 106 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 A1IJM . . . C 2 -16.596 26.29 -30.395 1 43.11 ? C10 A1IJM 501 A 1 HETATM 2 C C13 A1IJM . . . C 2 -17.643 26.315 -29.274 1 38.73 ? C13 A1IJM 501 A 1 HETATM 3 C C15 A1IJM . . . C 2 -18.465 27.644 -27.366 1 32.91 ? C15 A1IJM 501 A 1 HETATM 4 C C01 A1IJM . . . C 2 -10.667 27.212 -36.041 1 59.99 ? C01 A1IJM 501 A 1 HETATM 5 C C03 A1IJM . . . C 2 -11.525 25.813 -34.129 1 69.38 ? C03 A1IJM 501 A 1 HETATM 6 C C05 A1IJM . . . C 2 -12.702 25.29 -33.307 1 68.2 ? C05 A1IJM 501 A 1 HETATM 7 C C07 A1IJM . . . C 2 -14.695 26.226 -32.415 1 55.91 ? C07 A1IJM 501 A 1 HETATM 8 C C08 A1IJM . . . C 2 -15.728 27.147 -32.462 1 55.02 ? C08 A1IJM 501 A 1 HETATM 9 C C09 A1IJM . . . C 2 -16.677 27.18 -31.453 1 53.11 ? C09 A1IJM 501 A 1 HETATM 10 C C11 A1IJM . . . C 2 -15.562 25.367 -30.347 1 48.92 ? C11 A1IJM 501 A 1 HETATM 11 C C12 A1IJM . . . C 2 -14.611 25.332 -31.356 1 50.34 ? C12 A1IJM 501 A 1 HETATM 12 C C14 A1IJM . . . C 2 -17.436 27.515 -28.427 1 37.13 ? C14 A1IJM 501 A 1 HETATM 13 C C16 A1IJM . . . C 2 -19.894 27.684 -27.898 1 34.1 ? C16 A1IJM 501 A 1 HETATM 14 C C19 A1IJM . . . C 2 -19.022 26.242 -29.933 1 36.4 ? C19 A1IJM 501 A 1 HETATM 15 N N02 A1IJM . . . C 2 -11.773 26.704 -35.25 1 63.85 ? N02 A1IJM 501 A 1 HETATM 16 N N18 A1IJM . . . C 2 -20.103 26.974 -29.201 1 39.05 ? N18 A1IJM 501 A 1 HETATM 17 O O04 A1IJM . . . C 2 -10.417 25.491 -33.858 1 77.96 ? O04 A1IJM 501 A 1 HETATM 18 O O06 A1IJM . . . C 2 -13.747 26.215 -33.448 1 66.55 ? O06 A1IJM 501 A 1 HETATM 19 O O17 A1IJM . . . C 2 -20.773 28.252 -27.344 1 41.21 ? O17 A1IJM 501 A 1 HETATM 20 O O20 A1IJM . . . C 2 -19.238 25.651 -30.941 1 37.97 ? O20 A1IJM 501 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #