data_9GAO
#
_model_server_result.job_id            '_usAbdQAK-wCbTz4l75M_g' 
_model_server_result.datetime_utc      '2024-11-29 20:46:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9gao 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":501}' 
#
_entry.id    9GAO 
#
_exptl.entry_id    9GAO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              276.288 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-[4-[(3~{R})-2,6-bis(oxidanylidene)piperidin-3-yl]phenoxy]-~{N}-methyl-ethanamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9GAO 
_cell.length_a            53.507 
_cell.length_b            94.862 
_cell.length_c            147.952 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9GAO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 226 A CYS 323 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? 
metalc ? metalc2 A SG CYS 229 A CYS 326 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
metalc ? metalc3 A SG CYS 294 A CYS 391 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? 
metalc ? metalc4 A SG CYS 297 A CYS 394 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
metalc ? metalc5 B SG CYS 226 C CYS 323 1_555 F ZN ZN . C ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? 
metalc ? metalc6 B SG CYS 229 C CYS 326 1_555 F ZN ZN . C ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? 
metalc ? metalc7 B SG CYS 294 C CYS 391 1_555 F ZN ZN . C ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? 
metalc ? metalc8 B SG CYS 297 C CYS 394 1_555 F ZN ZN . C ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
#
_chem_comp.formula           'C14 H16 N2 O4' 
_chem_comp.formula_weight    276.288 
_chem_comp.id                A1IJM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-[4-[(3~{R})-2,6-bis(oxidanylidene)piperidin-3-yl]phenoxy]-~{N}-methyl-ethanamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N02 C01 A1IJM sing 1 n n 
C03 N02 A1IJM sing 2 n n 
O04 C03 A1IJM doub 3 n n 
C05 C03 A1IJM sing 4 n n 
O06 C05 A1IJM sing 5 n n 
C07 O06 A1IJM sing 6 n n 
C08 C07 A1IJM doub 7 n y 
C09 C08 A1IJM sing 8 n y 
C10 C09 A1IJM doub 9 n y 
C12 C11 A1IJM doub 10 n y 
C11 C10 A1IJM sing 11 n y 
C13 C10 A1IJM sing 12 n n 
C14 C13 A1IJM sing 13 n n 
C15 C14 A1IJM sing 14 n n 
C16 C15 A1IJM sing 15 n n 
O17 C16 A1IJM doub 16 n n 
N18 C16 A1IJM sing 17 n n 
C19 N18 A1IJM sing 18 n n 
O20 C19 A1IJM doub 19 n n 
C07 C12 A1IJM sing 20 n y 
C13 C19 A1IJM sing 21 n n 
C13 H131 A1IJM sing 22 n n 
C15 H152 A1IJM sing 23 n n 
C15 H151 A1IJM sing 24 n n 
C01 H013 A1IJM sing 25 n n 
C01 H012 A1IJM sing 26 n n 
C01 H011 A1IJM sing 27 n n 
C05 H051 A1IJM sing 28 n n 
C05 H052 A1IJM sing 29 n n 
C08 H081 A1IJM sing 30 n n 
C09 H091 A1IJM sing 31 n n 
C11 H111 A1IJM sing 32 n n 
C12 H121 A1IJM sing 33 n n 
C14 H142 A1IJM sing 34 n n 
C14 H141 A1IJM sing 35 n n 
N02 H021 A1IJM sing 36 n n 
N18 H181 A1IJM sing 37 n n 
#
_atom_sites.entry_id                     9GAO 
_atom_sites.fract_transf_matrix[1][1]    0.018689 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010542 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006759 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 A1IJM A 1 501 501 A1IJM LIG . 
D 3 ZN A 1 502 1 ZN ZN . 
E 2 A1IJM C 1 501 501 A1IJM LIG . 
F 3 ZN C 1 502 1 ZN ZN . 
G 4 HOH A 1 601 20 HOH HOH . 
G 4 HOH A 2 602 134 HOH HOH . 
G 4 HOH A 3 603 6 HOH HOH . 
G 4 HOH A 4 604 139 HOH HOH . 
G 4 HOH A 5 605 56 HOH HOH . 
G 4 HOH A 6 606 23 HOH HOH . 
G 4 HOH A 7 607 120 HOH HOH . 
G 4 HOH A 8 608 102 HOH HOH . 
G 4 HOH A 9 609 59 HOH HOH . 
G 4 HOH A 10 610 12 HOH HOH . 
G 4 HOH A 11 611 51 HOH HOH . 
G 4 HOH A 12 612 8 HOH HOH . 
G 4 HOH A 13 613 48 HOH HOH . 
G 4 HOH A 14 614 100 HOH HOH . 
G 4 HOH A 15 615 136 HOH HOH . 
G 4 HOH A 16 616 10 HOH HOH . 
G 4 HOH A 17 617 21 HOH HOH . 
G 4 HOH A 18 618 30 HOH HOH . 
G 4 HOH A 19 619 103 HOH HOH . 
G 4 HOH A 20 620 99 HOH HOH . 
G 4 HOH A 21 621 141 HOH HOH . 
G 4 HOH A 22 622 29 HOH HOH . 
G 4 HOH A 23 623 49 HOH HOH . 
G 4 HOH A 24 624 72 HOH HOH . 
G 4 HOH A 25 625 71 HOH HOH . 
G 4 HOH A 26 626 38 HOH HOH . 
G 4 HOH A 27 627 104 HOH HOH . 
G 4 HOH A 28 628 46 HOH HOH . 
G 4 HOH A 29 629 84 HOH HOH . 
G 4 HOH A 30 630 129 HOH HOH . 
G 4 HOH A 31 631 44 HOH HOH . 
G 4 HOH A 32 632 65 HOH HOH . 
G 4 HOH A 33 633 39 HOH HOH . 
G 4 HOH A 34 634 119 HOH HOH . 
G 4 HOH A 35 635 76 HOH HOH . 
G 4 HOH A 36 636 34 HOH HOH . 
G 4 HOH A 37 637 135 HOH HOH . 
G 4 HOH A 38 638 52 HOH HOH . 
G 4 HOH A 39 639 58 HOH HOH . 
G 4 HOH A 40 640 33 HOH HOH . 
G 4 HOH A 41 641 19 HOH HOH . 
G 4 HOH A 42 642 54 HOH HOH . 
G 4 HOH A 43 643 77 HOH HOH . 
G 4 HOH A 44 644 90 HOH HOH . 
G 4 HOH A 45 645 53 HOH HOH . 
G 4 HOH A 46 646 62 HOH HOH . 
H 4 HOH C 1 601 92 HOH HOH . 
H 4 HOH C 2 602 3 HOH HOH . 
H 4 HOH C 3 603 130 HOH HOH . 
H 4 HOH C 4 604 87 HOH HOH . 
H 4 HOH C 5 605 13 HOH HOH . 
H 4 HOH C 6 606 142 HOH HOH . 
H 4 HOH C 7 607 108 HOH HOH . 
H 4 HOH C 8 608 57 HOH HOH . 
H 4 HOH C 9 609 112 HOH HOH . 
H 4 HOH C 10 610 9 HOH HOH . 
H 4 HOH C 11 611 47 HOH HOH . 
H 4 HOH C 12 612 138 HOH HOH . 
H 4 HOH C 13 613 37 HOH HOH . 
H 4 HOH C 14 614 40 HOH HOH . 
H 4 HOH C 15 615 105 HOH HOH . 
H 4 HOH C 16 616 2 HOH HOH . 
H 4 HOH C 17 617 80 HOH HOH . 
H 4 HOH C 18 618 140 HOH HOH . 
H 4 HOH C 19 619 68 HOH HOH . 
H 4 HOH C 20 620 121 HOH HOH . 
H 4 HOH C 21 621 28 HOH HOH . 
H 4 HOH C 22 622 4 HOH HOH . 
H 4 HOH C 23 623 115 HOH HOH . 
H 4 HOH C 24 624 16 HOH HOH . 
H 4 HOH C 25 625 11 HOH HOH . 
H 4 HOH C 26 626 114 HOH HOH . 
H 4 HOH C 27 627 73 HOH HOH . 
H 4 HOH C 28 628 25 HOH HOH . 
H 4 HOH C 29 629 109 HOH HOH . 
H 4 HOH C 30 630 78 HOH HOH . 
H 4 HOH C 31 631 143 HOH HOH . 
H 4 HOH C 32 632 137 HOH HOH . 
H 4 HOH C 33 633 61 HOH HOH . 
H 4 HOH C 34 634 22 HOH HOH . 
H 4 HOH C 35 635 132 HOH HOH . 
H 4 HOH C 36 636 45 HOH HOH . 
H 4 HOH C 37 637 144 HOH HOH . 
H 4 HOH C 38 638 24 HOH HOH . 
H 4 HOH C 39 639 79 HOH HOH . 
H 4 HOH C 40 640 107 HOH HOH . 
H 4 HOH C 41 641 97 HOH HOH . 
H 4 HOH C 42 642 145 HOH HOH . 
H 4 HOH C 43 643 35 HOH HOH . 
H 4 HOH C 44 644 66 HOH HOH . 
H 4 HOH C 45 645 81 HOH HOH . 
H 4 HOH C 46 646 122 HOH HOH . 
H 4 HOH C 47 647 26 HOH HOH . 
H 4 HOH C 48 648 123 HOH HOH . 
H 4 HOH C 49 649 27 HOH HOH . 
H 4 HOH C 50 650 133 HOH HOH . 
H 4 HOH C 51 651 36 HOH HOH . 
H 4 HOH C 52 652 55 HOH HOH . 
H 4 HOH C 53 653 91 HOH HOH . 
H 4 HOH C 54 654 31 HOH HOH . 
H 4 HOH C 55 655 85 HOH HOH . 
H 4 HOH C 56 656 43 HOH HOH . 
H 4 HOH C 57 657 18 HOH HOH . 
H 4 HOH C 58 658 70 HOH HOH . 
H 4 HOH C 59 659 110 HOH HOH . 
H 4 HOH C 60 660 75 HOH HOH . 
H 4 HOH C 61 661 106 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 A1IJM . . . C 2 -16.596 26.29 -30.395 1 43.11 ? C10 A1IJM 501 A 1 
HETATM 2 C C13 A1IJM . . . C 2 -17.643 26.315 -29.274 1 38.73 ? C13 A1IJM 501 A 1 
HETATM 3 C C15 A1IJM . . . C 2 -18.465 27.644 -27.366 1 32.91 ? C15 A1IJM 501 A 1 
HETATM 4 C C01 A1IJM . . . C 2 -10.667 27.212 -36.041 1 59.99 ? C01 A1IJM 501 A 1 
HETATM 5 C C03 A1IJM . . . C 2 -11.525 25.813 -34.129 1 69.38 ? C03 A1IJM 501 A 1 
HETATM 6 C C05 A1IJM . . . C 2 -12.702 25.29 -33.307 1 68.2 ? C05 A1IJM 501 A 1 
HETATM 7 C C07 A1IJM . . . C 2 -14.695 26.226 -32.415 1 55.91 ? C07 A1IJM 501 A 1 
HETATM 8 C C08 A1IJM . . . C 2 -15.728 27.147 -32.462 1 55.02 ? C08 A1IJM 501 A 1 
HETATM 9 C C09 A1IJM . . . C 2 -16.677 27.18 -31.453 1 53.11 ? C09 A1IJM 501 A 1 
HETATM 10 C C11 A1IJM . . . C 2 -15.562 25.367 -30.347 1 48.92 ? C11 A1IJM 501 A 1 
HETATM 11 C C12 A1IJM . . . C 2 -14.611 25.332 -31.356 1 50.34 ? C12 A1IJM 501 A 1 
HETATM 12 C C14 A1IJM . . . C 2 -17.436 27.515 -28.427 1 37.13 ? C14 A1IJM 501 A 1 
HETATM 13 C C16 A1IJM . . . C 2 -19.894 27.684 -27.898 1 34.1 ? C16 A1IJM 501 A 1 
HETATM 14 C C19 A1IJM . . . C 2 -19.022 26.242 -29.933 1 36.4 ? C19 A1IJM 501 A 1 
HETATM 15 N N02 A1IJM . . . C 2 -11.773 26.704 -35.25 1 63.85 ? N02 A1IJM 501 A 1 
HETATM 16 N N18 A1IJM . . . C 2 -20.103 26.974 -29.201 1 39.05 ? N18 A1IJM 501 A 1 
HETATM 17 O O04 A1IJM . . . C 2 -10.417 25.491 -33.858 1 77.96 ? O04 A1IJM 501 A 1 
HETATM 18 O O06 A1IJM . . . C 2 -13.747 26.215 -33.448 1 66.55 ? O06 A1IJM 501 A 1 
HETATM 19 O O17 A1IJM . . . C 2 -20.773 28.252 -27.344 1 41.21 ? O17 A1IJM 501 A 1 
HETATM 20 O O20 A1IJM . . . C 2 -19.238 25.651 -30.941 1 37.97 ? O20 A1IJM 501 A 1 
#
_model_server_stats.io_time_ms              66 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           319 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           20 
#