data_9GAP # _model_server_result.job_id NjF7s1PR3YEndYfQGjPg3g _model_server_result.datetime_utc '2025-07-08 07:06:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9gap # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":101}' # _entry.id 9GAP # _exptl.entry_id 9GAP _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 493.505 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-[3,6-bis(oxidanylidene)-4,5-dihydroxanthen-9-yl]-4-[3-[(2R)-2-oxidanylpropoxy]propylcarbamoyl]benzoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9GAP _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9GAP _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 1 2 A,B,C,D,E 1 3 A,B,C,D,E 1 4 A,B,C,D,E 1 5 A,B,C,D,E 1 6 A,B,C,D,E 1 7 A,B,C,D,E 1 8 A,B,C,D,E 1 9 A,B,C,D,E 1 10 A,B,C,D,E 1 11 A,B,C,D,E 1 12 A,B,C,D,E 1 13 A,B,C,D,E 1 14 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? -0.991649 0.128969 0 -0.128969 -0.991649 0 0 0 1 426.55375 485.62136 -72.00012 3 'point symmetry operation' ? ? -0.423568 0.905864 0 -0.905864 -0.423568 0 0 0 1 118.55415 533.43985 -47.99995 4 'point symmetry operation' ? ? 0.536858 0.843672 0 -0.843672 0.536858 0 0 0 1 -87.14112 299.26075 -23.99994 5 'point symmetry operation' ? ? 0.536858 -0.843673 0 0.843673 0.536858 0 0 0 1 299.26083 -87.14133 24.00009 6 'point symmetry operation' ? ? -0.423568 -0.905864 0 0.905864 -0.423568 0 0 0 1 533.43988 118.55394 47.99993 7 'point symmetry operation' ? ? -0.991649 -0.128968 0 0.128968 -0.991649 0 0 0 1 485.62108 426.5539 71.99967 8 'point symmetry operation' ? ? 0.991649 -0.128969 0 0.128969 0.991649 0 0 0 1 31.44624 -27.62177 -72.00008 9 'point symmetry operation' ? ? 0.423568 -0.905865 0 0.905865 0.423568 0 0 0 1 339.44589 -75.43997 -47.99987 10 'point symmetry operation' ? ? -0.536858 -0.843672 0 0.843672 -0.536858 0 0 0 1 545.14167 158.73952 -23.99983 11 'point symmetry operation' ? ? -1 0 0 0 -1 0 0 0 1 458.00005 457.99988 0.00019 12 'point symmetry operation' ? ? -0.536858 0.843673 0 -0.843673 -0.536858 0 0 0 1 158.73936 545.1417 24.00006 13 'point symmetry operation' ? ? 0.423568 0.905865 0 -0.905865 0.423568 0 0 0 1 -75.43982 339.44594 48.00027 14 'point symmetry operation' ? ? 0.991649 0.128969 0 -0.128969 0.991649 0 0 0 1 -27.62148 31.44613 71.99961 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id O3' _struct_conn.ptnr1_label_comp_id C _struct_conn.ptnr1_label_seq_id 6 _struct_conn.ptnr1_auth_asym_id C _struct_conn.ptnr1_auth_comp_id C _struct_conn.ptnr1_auth_seq_id 12 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id E _struct_conn.ptnr2_label_atom_id C1 _struct_conn.ptnr2_label_comp_id A1IJK _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id C _struct_conn.ptnr2_auth_comp_id A1IJK _struct_conn.ptnr2_auth_seq_id 101 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.433 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C27 H27 N O8' _chem_comp.formula_weight 493.505 _chem_comp.id A1IJK _chem_comp.mon_nstd_flag . _chem_comp.name '2-[3,6-bis(oxidanylidene)-4,5-dihydroxanthen-9-yl]-4-[3-[(2R)-2-oxidanylpropoxy]propylcarbamoyl]benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 O5 A1IJK sing 1 n n C2 C1 A1IJK sing 2 n n C2 C3 A1IJK sing 3 n n O19 C17 A1IJK doub 4 n n C13 C12 A1IJK doub 5 n y C13 C14 A1IJK sing 6 n y C12 C11 A1IJK sing 7 n y O4 C3 A1IJK sing 8 n n O4 C6 A1IJK sing 9 n n N9 C8 A1IJK sing 10 n n N9 C10 A1IJK sing 11 n n C8 C7 A1IJK sing 12 n n C17 C14 A1IJK sing 13 n n C17 O18 A1IJK sing 14 n n C14 C15 A1IJK doub 15 n y C11 C10 A1IJK sing 16 n n C11 C16 A1IJK doub 17 n y C10 O26 A1IJK doub 18 n n C6 C7 A1IJK sing 19 n n C15 C16 A1IJK sing 20 n y C15 C20 A1IJK sing 21 n n C29 C30 A1IJK doub 22 n n C29 C28 A1IJK sing 23 n n C30 C21 A1IJK sing 24 n n C20 C21 A1IJK doub 25 n y C20 C25 A1IJK sing 26 n y C21 C22 A1IJK sing 27 n y C28 O35 A1IJK doub 28 n n C28 C27 A1IJK sing 29 n n C22 C27 A1IJK sing 30 n n C22 O23 A1IJK doub 31 n y C25 C34 A1IJK sing 32 n n C25 C24 A1IJK doub 33 n y C34 C33 A1IJK doub 34 n n O23 C24 A1IJK sing 35 n y C24 C31 A1IJK sing 36 n n C33 C32 A1IJK sing 37 n n C31 C32 A1IJK sing 38 n n C32 O36 A1IJK doub 39 n n C1 H1 A1IJK sing 40 n n C1 H2 A1IJK sing 41 n n C1 H3 A1IJK sing 42 n n C2 H4 A1IJK sing 43 n n C3 H5 A1IJK sing 44 n n C3 H6 A1IJK sing 45 n n C6 H7 A1IJK sing 46 n n C6 H8 A1IJK sing 47 n n C7 H9 A1IJK sing 48 n n C7 H10 A1IJK sing 49 n n O5 H11 A1IJK sing 50 n n C8 H12 A1IJK sing 51 n n C8 H13 A1IJK sing 52 n n N9 H14 A1IJK sing 53 n n C33 H15 A1IJK sing 54 n n C34 H16 A1IJK sing 55 n n C12 H17 A1IJK sing 56 n n C13 H18 A1IJK sing 57 n n C16 H19 A1IJK sing 58 n n C27 H20 A1IJK sing 59 n n C27 H21 A1IJK sing 60 n n C29 H22 A1IJK sing 61 n n C30 H23 A1IJK sing 62 n n C31 H24 A1IJK sing 63 n n C31 H25 A1IJK sing 64 n n O18 H26 A1IJK sing 65 n n O23 H27 A1IJK sing 66 n n # _atom_sites.entry_id 9GAP _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id E _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id A1IJK _pdbx_nonpoly_scheme.pdb_strand_id C _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 12 _pdbx_nonpoly_scheme.pdb_mon_id A1IJK _pdbx_nonpoly_scheme.auth_mon_id 6FM _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 A1IJK . . . E 3 202.363 236.435 214.834 1 93.4 ? C1 A1IJK 101 C 1 HETATM 2 C C2 A1IJK . . . E 3 203.847 236.426 214.563 1 102.89 ? C2 A1IJK 101 C 1 HETATM 3 C C3 A1IJK . . . E 3 204.564 235.351 215.35 1 112.47 ? C3 A1IJK 101 C 1 HETATM 4 C C6 A1IJK . . . E 3 206.667 234.706 216.225 1 112.53 ? C6 A1IJK 101 C 1 HETATM 5 C C7 A1IJK . . . E 3 206.457 233.242 215.897 1 111.57 ? C7 A1IJK 101 C 1 HETATM 6 O O4 A1IJK . . . E 3 205.974 235.533 215.296 1 120.55 ? O4 A1IJK 101 C 1 HETATM 7 O O5 A1IJK . . . E 3 204.386 237.705 214.895 1 102.25 ? O5 A1IJK 101 C 1 HETATM 8 C C8 A1IJK . . . E 3 207.364 232.718 214.797 1 112.68 ? C8 A1IJK 101 C 1 HETATM 9 C C10 A1IJK . . . E 3 207.688 230.308 215.039 1 105.7 ? C10 A1IJK 101 C 1 HETATM 10 N N9 A1IJK . . . E 3 207.058 231.333 214.463 1 111.11 ? N9 A1IJK 101 C 1 HETATM 11 C C33 A1IJK . . . E 3 204.885 226.344 219.083 1 119.37 ? C33 A1IJK 101 C 1 HETATM 12 C C34 A1IJK . . . E 3 205.499 226.365 217.866 1 114.73 ? C34 A1IJK 101 C 1 HETATM 13 C C11 A1IJK . . . E 3 207.188 228.93 214.707 1 105.21 ? C11 A1IJK 101 C 1 HETATM 14 C C12 A1IJK . . . E 3 206.48 228.715 213.534 1 105.12 ? C12 A1IJK 101 C 1 HETATM 15 C C13 A1IJK . . . E 3 206.012 227.454 213.224 1 105.21 ? C13 A1IJK 101 C 1 HETATM 16 C C14 A1IJK . . . E 3 206.21 226.376 214.08 1 104.6 ? C14 A1IJK 101 C 1 HETATM 17 C C15 A1IJK . . . E 3 206.913 226.588 215.285 1 106.81 ? C15 A1IJK 101 C 1 HETATM 18 C C16 A1IJK . . . E 3 207.39 227.864 215.578 1 106.56 ? C16 A1IJK 101 C 1 HETATM 19 C C17 A1IJK . . . E 3 205.649 225.038 213.655 1 107.51 ? C17 A1IJK 101 C 1 HETATM 20 C C20 A1IJK . . . E 3 207.182 225.485 216.26 1 110.17 ? C20 A1IJK 101 C 1 HETATM 21 C C21 A1IJK . . . E 3 208.086 224.376 215.96 1 107.19 ? C21 A1IJK 101 C 1 HETATM 22 C C22 A1IJK . . . E 3 208.322 223.387 216.949 1 105.27 ? C22 A1IJK 101 C 1 HETATM 23 C C24 A1IJK . . . E 3 206.846 224.452 218.492 1 112.74 ? C24 A1IJK 101 C 1 HETATM 24 C C25 A1IJK . . . E 3 206.504 225.449 217.552 1 113.07 ? C25 A1IJK 101 C 1 HETATM 25 C C27 A1IJK . . . E 3 209.154 222.314 216.676 1 103.15 ? C27 A1IJK 101 C 1 HETATM 26 C C28 A1IJK . . . E 3 209.793 222.193 215.386 1 105.93 ? C28 A1IJK 101 C 1 HETATM 27 C C29 A1IJK . . . E 3 209.544 223.213 214.417 1 103.81 ? C29 A1IJK 101 C 1 HETATM 28 C C30 A1IJK . . . E 3 208.713 224.281 214.716 1 106.18 ? C30 A1IJK 101 C 1 HETATM 29 C C31 A1IJK . . . E 3 206.266 224.485 219.755 1 114.18 ? C31 A1IJK 101 C 1 HETATM 30 C C32 A1IJK . . . E 3 205.267 225.455 220.067 1 120.02 ? C32 A1IJK 101 C 1 HETATM 31 O O18 A1IJK . . . E 3 205.55 224.136 214.504 1 110.57 ? O18 A1IJK 101 C 1 HETATM 32 O O19 A1IJK . . . E 3 205.311 224.915 212.465 1 106.14 ? O19 A1IJK 101 C 1 HETATM 33 O O23 A1IJK . . . E 3 207.738 223.454 218.19 1 110.29 ? O23 A1IJK 101 C 1 HETATM 34 O O26 A1IJK . . . E 3 208.634 230.47 215.807 1 99.24 ? O26 A1IJK 101 C 1 HETATM 35 O O35 A1IJK . . . E 3 210.535 221.237 215.13 1 115.37 ? O35 A1IJK 101 C 1 HETATM 36 O O36 A1IJK . . . E 3 204.748 225.492 221.189 1 122.57 ? O36 A1IJK 101 C 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 36 #