data_9GAT # _model_server_result.job_id 35twQF_LOutiuBlZTNtZcQ _model_server_result.datetime_utc '2025-01-18 05:07:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9gat # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":101}' # _entry.id 9GAT # _exptl.entry_id 9GAT _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 493.505 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-[3,6-bis(oxidanylidene)-4,5-dihydroxanthen-9-yl]-4-[3-[(2R)-2-oxidanylpropoxy]propylcarbamoyl]benzoic acid' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9GAT _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9GAT _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 16-meric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 1 2 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 1 3 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 1 4 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 1 5 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? 0.918998 -0.394263 0 0.394263 0.918998 0 0 0 1 108.88195 -72.28187 -163.2 3 'point symmetry operation' ? ? -0.97954 0.201249 0 -0.201249 -0.97954 0 0 0 1 409.93328 499.35565 -81.6 4 'point symmetry operation' ? ? -0.97954 -0.201249 0 0.201249 -0.97954 0 0 0 1 502.04087 406.64028 81.6 5 'point symmetry operation' ? ? 0.918998 0.394263 0 -0.394263 0.918998 0 0 0 1 -71.56422 109.35497 163.2 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 Q N N ? 3 R N N ? 3 S N N ? 3 T N N ? 3 U N N ? 3 V N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O3' C 18 O C 18 1_555 Q C1 A1IJK . O A1IJK 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale2 D O3' C 12 M C 18 1_555 R C1 A1IJK . M A1IJK 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale3 E O3' C 18 N C 18 1_555 S C1 A1IJK . N A1IJK 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale4 F O3' C 12 E C 18 1_555 T C1 A1IJK . E A1IJK 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale5 G O3' C 18 F C 18 1_555 U C1 A1IJK . F A1IJK 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale6 H O3' C 18 G C 18 1_555 V C1 A1IJK . G A1IJK 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? # _chem_comp.formula 'C27 H27 N O8' _chem_comp.formula_weight 493.505 _chem_comp.id A1IJK _chem_comp.mon_nstd_flag . _chem_comp.name '2-[3,6-bis(oxidanylidene)-4,5-dihydroxanthen-9-yl]-4-[3-[(2R)-2-oxidanylpropoxy]propylcarbamoyl]benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 O5 A1IJK sing 1 n n C2 C1 A1IJK sing 2 n n C2 C3 A1IJK sing 3 n n O19 C17 A1IJK doub 4 n n C13 C12 A1IJK doub 5 n y C13 C14 A1IJK sing 6 n y C12 C11 A1IJK sing 7 n y O4 C3 A1IJK sing 8 n n O4 C6 A1IJK sing 9 n n N9 C8 A1IJK sing 10 n n N9 C10 A1IJK sing 11 n n C8 C7 A1IJK sing 12 n n C17 C14 A1IJK sing 13 n n C17 O18 A1IJK sing 14 n n C14 C15 A1IJK doub 15 n y C11 C10 A1IJK sing 16 n n C11 C16 A1IJK doub 17 n y C10 O26 A1IJK doub 18 n n C6 C7 A1IJK sing 19 n n C15 C16 A1IJK sing 20 n y C15 C20 A1IJK sing 21 n n C29 C30 A1IJK doub 22 n n C29 C28 A1IJK sing 23 n n C30 C21 A1IJK sing 24 n n C20 C21 A1IJK doub 25 n y C20 C25 A1IJK sing 26 n y C21 C22 A1IJK sing 27 n y C28 O35 A1IJK doub 28 n n C28 C27 A1IJK sing 29 n n C22 C27 A1IJK sing 30 n n C22 O23 A1IJK doub 31 n y C25 C34 A1IJK sing 32 n n C25 C24 A1IJK doub 33 n y C34 C33 A1IJK doub 34 n n O23 C24 A1IJK sing 35 n y C24 C31 A1IJK sing 36 n n C33 C32 A1IJK sing 37 n n C31 C32 A1IJK sing 38 n n C32 O36 A1IJK doub 39 n n C1 H1 A1IJK sing 40 n n C1 H2 A1IJK sing 41 n n C1 H3 A1IJK sing 42 n n C2 H4 A1IJK sing 43 n n C3 H5 A1IJK sing 44 n n C3 H6 A1IJK sing 45 n n C6 H7 A1IJK sing 46 n n C6 H8 A1IJK sing 47 n n C7 H9 A1IJK sing 48 n n C7 H10 A1IJK sing 49 n n O5 H11 A1IJK sing 50 n n C8 H12 A1IJK sing 51 n n C8 H13 A1IJK sing 52 n n N9 H14 A1IJK sing 53 n n C33 H15 A1IJK sing 54 n n C34 H16 A1IJK sing 55 n n C12 H17 A1IJK sing 56 n n C13 H18 A1IJK sing 57 n n C16 H19 A1IJK sing 58 n n C27 H20 A1IJK sing 59 n n C27 H21 A1IJK sing 60 n n C29 H22 A1IJK sing 61 n n C30 H23 A1IJK sing 62 n n C31 H24 A1IJK sing 63 n n C31 H25 A1IJK sing 64 n n O18 H26 A1IJK sing 65 n n O23 H27 A1IJK sing 66 n n # _atom_sites.entry_id 9GAT _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Q 3 A1IJK O 1 101 18 A1IJK 6FM . R 3 A1IJK M 1 101 18 A1IJK 6FM . S 3 A1IJK N 1 101 18 A1IJK 6FM . T 3 A1IJK E 1 601 18 A1IJK 6FM . U 3 A1IJK F 1 601 18 A1IJK 6FM . V 3 A1IJK G 1 601 18 A1IJK 6FM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 A1IJK . . . Q 3 269.426 244.605 266.564 1 132.88 ? C1 A1IJK 101 O 1 HETATM 2 C C2 A1IJK . . . Q 3 269.035 243.356 267.31 1 139.3 ? C2 A1IJK 101 O 1 HETATM 3 C C3 A1IJK . . . Q 3 269.363 243.439 268.783 1 140.15 ? C3 A1IJK 101 O 1 HETATM 4 C C6 A1IJK . . . Q 3 271.165 243.903 270.271 1 137.33 ? C6 A1IJK 101 O 1 HETATM 5 C C7 A1IJK . . . Q 3 271.346 242.481 270.758 1 138.35 ? C7 A1IJK 101 O 1 HETATM 6 O O4 A1IJK . . . Q 3 270.701 243.898 268.927 1 139.26 ? O4 A1IJK 101 O 1 HETATM 7 O O5 A1IJK . . . Q 3 269.728 242.246 266.741 1 137.65 ? O5 A1IJK 101 O 1 HETATM 8 C C8 A1IJK . . . Q 3 272.299 241.668 269.903 1 136.99 ? C8 A1IJK 101 O 1 HETATM 9 C C10 A1IJK . . . Q 3 273.981 242.765 268.525 1 132.08 ? C10 A1IJK 101 O 1 HETATM 10 N N9 A1IJK . . . Q 3 273.566 242.36 269.724 1 133.31 ? N9 A1IJK 101 O 1 HETATM 11 C C33 A1IJK . . . Q 3 275.422 247.205 272.895 1 122.86 ? C33 A1IJK 101 O 1 HETATM 12 C C34 A1IJK . . . Q 3 275.942 246.456 271.882 1 120.1 ? C34 A1IJK 101 O 1 HETATM 13 C C11 A1IJK . . . Q 3 275.175 243.673 268.494 1 124.31 ? C11 A1IJK 101 O 1 HETATM 14 C C12 A1IJK . . . Q 3 275.591 244.267 267.313 1 125.16 ? C12 A1IJK 101 O 1 HETATM 15 C C13 A1IJK . . . Q 3 276.691 245.099 267.305 1 128.48 ? C13 A1IJK 101 O 1 HETATM 16 C C14 A1IJK . . . Q 3 277.411 245.361 268.466 1 128.35 ? C14 A1IJK 101 O 1 HETATM 17 C C15 A1IJK . . . Q 3 276.985 244.767 269.672 1 122.38 ? C15 A1IJK 101 O 1 HETATM 18 C C16 A1IJK . . . Q 3 275.88 243.923 269.664 1 121.1 ? C16 A1IJK 101 O 1 HETATM 19 C C17 A1IJK . . . Q 3 278.6 246.288 268.35 1 131.1 ? C17 A1IJK 101 O 1 HETATM 20 C C20 A1IJK . . . Q 3 277.697 244.968 270.968 1 120.41 ? C20 A1IJK 101 O 1 HETATM 21 C C21 A1IJK . . . Q 3 278.949 244.284 271.219 1 119.53 ? C21 A1IJK 101 O 1 HETATM 22 C C22 A1IJK . . . Q 3 279.633 244.511 272.438 1 121.22 ? C22 A1IJK 101 O 1 HETATM 23 C C24 A1IJK . . . Q 3 277.922 245.996 273.204 1 126.4 ? C24 A1IJK 101 O 1 HETATM 24 C C25 A1IJK . . . Q 3 277.172 245.821 272.021 1 121.69 ? C25 A1IJK 101 O 1 HETATM 25 C C27 A1IJK . . . Q 3 280.803 243.818 272.704 1 120.13 ? C27 A1IJK 101 O 1 HETATM 26 C C28 A1IJK . . . Q 3 281.305 242.843 271.761 1 123.03 ? C28 A1IJK 101 O 1 HETATM 27 C C29 A1IJK . . . Q 3 280.61 242.685 270.523 1 120.85 ? C29 A1IJK 101 O 1 HETATM 28 C C30 A1IJK . . . Q 3 279.462 243.407 270.268 1 119.73 ? C30 A1IJK 101 O 1 HETATM 29 C C31 A1IJK . . . Q 3 277.397 246.787 274.223 1 126.77 ? C31 A1IJK 101 O 1 HETATM 30 C C32 A1IJK . . . Q 3 276.107 247.384 274.082 1 125.31 ? C32 A1IJK 101 O 1 HETATM 31 O O18 A1IJK . . . Q 3 279.227 246.589 269.38 1 130.13 ? O18 A1IJK 101 O 1 HETATM 32 O O19 A1IJK . . . Q 3 278.886 246.708 267.214 1 133.07 ? O19 A1IJK 101 O 1 HETATM 33 O O23 A1IJK . . . Q 3 279.145 245.388 273.38 1 127.54 ? O23 A1IJK 101 O 1 HETATM 34 O O26 A1IJK . . . Q 3 273.409 242.434 267.486 1 136.19 ? O26 A1IJK 101 O 1 HETATM 35 O O35 A1IJK . . . Q 3 282.31 242.172 272.014 1 127.83 ? O35 A1IJK 101 O 1 HETATM 36 O O36 A1IJK . . . Q 3 275.617 248.054 274.997 1 125.38 ? O36 A1IJK 101 O 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 140 _model_server_stats.create_model_time_ms 155 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 36 #