data_9GAV
#
_model_server_result.job_id            LXSaMxeWWyAFWwGP57pdMQ 
_model_server_result.datetime_utc      '2025-07-07 21:57:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9gav 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":101}' 
#
_entry.id    9GAV 
#
_exptl.entry_id    9GAV 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              493.505 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-[3,6-bis(oxidanylidene)-4,5-dihydroxanthen-9-yl]-4-[3-[(2R)-2-oxidanylpropoxy]propylcarbamoyl]benzoic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9GAV 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9GAV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B O3' C 12 D C 18 1_555 G C1 A1IJK . D A1IJK 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? 
covale ? covale2 C O3' C 18 E C 18 1_555 H C1 A1IJK . E A1IJK 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? 
#
_chem_comp.formula           'C27 H27 N O8' 
_chem_comp.formula_weight    493.505 
_chem_comp.id                A1IJK 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-[3,6-bis(oxidanylidene)-4,5-dihydroxanthen-9-yl]-4-[3-[(2R)-2-oxidanylpropoxy]propylcarbamoyl]benzoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 O5 A1IJK sing 1 n n 
C2 C1 A1IJK sing 2 n n 
C2 C3 A1IJK sing 3 n n 
O19 C17 A1IJK doub 4 n n 
C13 C12 A1IJK doub 5 n y 
C13 C14 A1IJK sing 6 n y 
C12 C11 A1IJK sing 7 n y 
O4 C3 A1IJK sing 8 n n 
O4 C6 A1IJK sing 9 n n 
N9 C8 A1IJK sing 10 n n 
N9 C10 A1IJK sing 11 n n 
C8 C7 A1IJK sing 12 n n 
C17 C14 A1IJK sing 13 n n 
C17 O18 A1IJK sing 14 n n 
C14 C15 A1IJK doub 15 n y 
C11 C10 A1IJK sing 16 n n 
C11 C16 A1IJK doub 17 n y 
C10 O26 A1IJK doub 18 n n 
C6 C7 A1IJK sing 19 n n 
C15 C16 A1IJK sing 20 n y 
C15 C20 A1IJK sing 21 n n 
C29 C30 A1IJK doub 22 n n 
C29 C28 A1IJK sing 23 n n 
C30 C21 A1IJK sing 24 n n 
C20 C21 A1IJK doub 25 n y 
C20 C25 A1IJK sing 26 n y 
C21 C22 A1IJK sing 27 n y 
C28 O35 A1IJK doub 28 n n 
C28 C27 A1IJK sing 29 n n 
C22 C27 A1IJK sing 30 n n 
C22 O23 A1IJK doub 31 n y 
C25 C34 A1IJK sing 32 n n 
C25 C24 A1IJK doub 33 n y 
C34 C33 A1IJK doub 34 n n 
O23 C24 A1IJK sing 35 n y 
C24 C31 A1IJK sing 36 n n 
C33 C32 A1IJK sing 37 n n 
C31 C32 A1IJK sing 38 n n 
C32 O36 A1IJK doub 39 n n 
C1 H1 A1IJK sing 40 n n 
C1 H2 A1IJK sing 41 n n 
C1 H3 A1IJK sing 42 n n 
C2 H4 A1IJK sing 43 n n 
C3 H5 A1IJK sing 44 n n 
C3 H6 A1IJK sing 45 n n 
C6 H7 A1IJK sing 46 n n 
C6 H8 A1IJK sing 47 n n 
C7 H9 A1IJK sing 48 n n 
C7 H10 A1IJK sing 49 n n 
O5 H11 A1IJK sing 50 n n 
C8 H12 A1IJK sing 51 n n 
C8 H13 A1IJK sing 52 n n 
N9 H14 A1IJK sing 53 n n 
C33 H15 A1IJK sing 54 n n 
C34 H16 A1IJK sing 55 n n 
C12 H17 A1IJK sing 56 n n 
C13 H18 A1IJK sing 57 n n 
C16 H19 A1IJK sing 58 n n 
C27 H20 A1IJK sing 59 n n 
C27 H21 A1IJK sing 60 n n 
C29 H22 A1IJK sing 61 n n 
C30 H23 A1IJK sing 62 n n 
C31 H24 A1IJK sing 63 n n 
C31 H25 A1IJK sing 64 n n 
O18 H26 A1IJK sing 65 n n 
O23 H27 A1IJK sing 66 n n 
#
_atom_sites.entry_id                     9GAV 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 3 A1IJK D 1 101 18 A1IJK 6FM . 
H 3 A1IJK E 1 101 18 A1IJK 6FM . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 A1IJK . . . H 3 256.377 213.149 212.469 1 51.84 ? C1 A1IJK 101 E 1 
HETATM 2 C C2 A1IJK . . . H 3 257.379 213.003 213.592 1 51.84 ? C2 A1IJK 101 E 1 
HETATM 3 C C3 A1IJK . . . H 3 258.092 214.295 213.919 1 51.84 ? C3 A1IJK 101 E 1 
HETATM 4 C C6 A1IJK . . . H 3 259.603 215.29 215.448 1 51.84 ? C6 A1IJK 101 E 1 
HETATM 5 C C7 A1IJK . . . H 3 260.395 215.036 216.713 1 51.84 ? C7 A1IJK 101 E 1 
HETATM 6 O O4 A1IJK . . . H 3 258.961 214.092 215.028 1 51.84 ? O4 A1IJK 101 E 1 
HETATM 7 O O5 A1IJK . . . H 3 258.34 212.015 213.224 1 51.84 ? O5 A1IJK 101 E 1 
HETATM 8 C C8 A1IJK . . . H 3 261.629 214.179 216.507 1 51.84 ? C8 A1IJK 101 E 1 
HETATM 9 C C10 A1IJK . . . H 3 263.748 214.831 217.499 1 51.84 ? C10 A1IJK 101 E 1 
HETATM 10 N N9 A1IJK . . . H 3 262.847 214.976 216.528 1 51.84 ? N9 A1IJK 101 E 1 
HETATM 11 C C33 A1IJK . . . H 3 268.353 215.589 212.413 1 51.84 ? C33 A1IJK 101 E 1 
HETATM 12 C C34 A1IJK . . . H 3 267.746 216.04 213.547 1 51.84 ? C34 A1IJK 101 E 1 
HETATM 13 C C11 A1IJK . . . H 3 265.085 215.489 217.308 1 51.84 ? C11 A1IJK 101 E 1 
HETATM 14 C C12 A1IJK . . . H 3 266.103 215.237 218.216 1 51.84 ? C12 A1IJK 101 E 1 
HETATM 15 C C13 A1IJK . . . H 3 267.341 215.826 218.058 1 51.84 ? C13 A1IJK 101 E 1 
HETATM 16 C C14 A1IJK . . . H 3 267.598 216.689 216.999 1 51.84 ? C14 A1IJK 101 E 1 
HETATM 17 C C15 A1IJK . . . H 3 266.568 216.954 216.076 1 51.84 ? C15 A1IJK 101 E 1 
HETATM 18 C C16 A1IJK . . . H 3 265.326 216.348 216.241 1 51.84 ? C16 A1IJK 101 E 1 
HETATM 19 C C17 A1IJK . . . H 3 268.978 217.296 216.895 1 51.84 ? C17 A1IJK 101 E 1 
HETATM 20 C C20 A1IJK . . . H 3 266.768 217.861 214.906 1 51.84 ? C20 A1IJK 101 E 1 
HETATM 21 C C21 A1IJK . . . H 3 266.333 219.246 214.936 1 51.84 ? C21 A1IJK 101 E 1 
HETATM 22 C C22 A1IJK . . . H 3 266.554 220.067 213.801 1 51.84 ? C22 A1IJK 101 E 1 
HETATM 23 C C24 A1IJK . . . H 3 267.611 218.277 212.618 1 51.84 ? C24 A1IJK 101 E 1 
HETATM 24 C C25 A1IJK . . . H 3 267.387 217.379 213.682 1 51.84 ? C25 A1IJK 101 E 1 
HETATM 25 C C27 A1IJK . . . H 3 266.084 221.372 213.795 1 51.84 ? C27 A1IJK 101 E 1 
HETATM 26 C C28 A1IJK . . . H 3 265.359 221.895 214.932 1 51.84 ? C28 A1IJK 101 E 1 
HETATM 27 C C29 A1IJK . . . H 3 265.214 221.055 216.079 1 51.84 ? C29 A1IJK 101 E 1 
HETATM 28 C C30 A1IJK . . . H 3 265.705 219.761 216.069 1 51.84 ? C30 A1IJK 101 E 1 
HETATM 29 C C31 A1IJK . . . H 3 268.254 217.813 211.474 1 51.84 ? C31 A1IJK 101 E 1 
HETATM 30 C C32 A1IJK . . . H 3 268.652 216.444 211.371 1 51.84 ? C32 A1IJK 101 E 1 
HETATM 31 O O18 A1IJK . . . H 3 269.173 218.171 216.037 1 51.84 ? O18 A1IJK 101 E 1 
HETATM 32 O O19 A1IJK . . . H 3 269.85 216.876 217.674 1 51.84 ? O19 A1IJK 101 E 1 
HETATM 33 O O23 A1IJK . . . H 3 267.21 219.591 212.688 1 51.84 ? O23 A1IJK 101 E 1 
HETATM 34 O O26 A1IJK . . . H 3 263.517 214.164 218.506 1 51.84 ? O26 A1IJK 101 E 1 
HETATM 35 O O35 A1IJK . . . H 3 264.887 223.036 214.917 1 51.84 ? O35 A1IJK 101 E 1 
HETATM 36 O O36 A1IJK . . . H 3 269.245 216.03 210.37 1 51.84 ? O36 A1IJK 101 E 1 
#
_model_server_stats.io_time_ms              63 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           239 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           36 
#