data_9GBF
#
_model_server_result.job_id            jPubilsa0SFnnq7qRVMBWw 
_model_server_result.datetime_utc      '2025-03-27 07:15:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9gbf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":1404}' 
#
_entry.id    9GBF 
#
_exptl.entry_id    9GBF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.65 
_cell.angle_gamma         90 
_cell.entry_id            9GBF 
_cell.length_a            36.131 
_cell.length_b            45.249 
_cell.length_c            60.646 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9GBF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,O 1 1 
B,I,J,K,L,M,N,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 14 A CYS 1242 1_555 F ZN ZN . A ZN 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc2 A SG CYS 17 A CYS 1245 1_555 F ZN ZN . A ZN 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? 
metalc ? metalc3 A SG CYS 26 A CYS 1254 1_555 C ZN ZN . A ZN 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc4 A SG CYS 31 A CYS 1259 1_555 C ZN ZN . A ZN 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? 
metalc ? metalc5 A ND1 HIS 36 A HIS 1264 1_555 F ZN ZN . A ZN 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? 
metalc ? metalc6 A SG CYS 39 A CYS 1267 1_555 F ZN ZN . A ZN 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? 
metalc ? metalc7 A SG CYS 52 A CYS 1280 1_555 C ZN ZN . A ZN 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? 
metalc ? metalc8 A O PRO 53 A PRO 1281 1_555 G NA NA . A NA 1405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? 
metalc ? metalc9 A NE2 HIS 55 A HIS 1283 1_555 C ZN ZN . A ZN 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? 
metalc ? metalc10 A O HIS 56 A HIS 1284 1_555 G NA NA . A NA 1405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? 
metalc ? metalc11 A SG CYS 57 A CYS 1285 1_555 E ZN ZN . A ZN 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc12 A OD1 ASP 58 A ASP 1286 1_555 G NA NA . A NA 1405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? 
metalc ? metalc13 A SG CYS 60 A CYS 1288 1_555 E ZN ZN . A ZN 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? 
metalc ? metalc14 A SG CYS 68 A CYS 1296 1_555 D ZN ZN . A ZN 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? 
metalc ? metalc15 A SG CYS 71 A CYS 1299 1_555 D ZN ZN . A ZN 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc16 A O PRO 72 A PRO 1300 1_555 G NA NA . A NA 1405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.667 ? 
metalc ? metalc17 A OG SER 74 A SER 1302 1_555 G NA NA . A NA 1405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? 
metalc ? metalc18 A SG CYS 76 A CYS 1304 1_555 E ZN ZN . A ZN 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? 
metalc ? metalc19 A ND1 HIS 79 A HIS 1307 1_555 E ZN ZN . A ZN 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
metalc ? metalc20 A SG CYS 95 A CYS 1323 1_555 D ZN ZN . A ZN 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? 
metalc ? metalc21 A NE2 HIS 98 A HIS 1326 1_555 D ZN ZN . A ZN 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
metalc ? metalc22 B SG CYS 14 B CYS 1242 1_555 I ZN ZN . B ZN 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? 
metalc ? metalc23 B SG CYS 17 B CYS 1245 1_555 I ZN ZN . B ZN 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? 
metalc ? metalc24 B SG CYS 26 B CYS 1254 1_555 J ZN ZN . B ZN 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
metalc ? metalc25 B SG CYS 31 B CYS 1259 1_555 J ZN ZN . B ZN 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
metalc ? metalc26 B ND1 HIS 36 B HIS 1264 1_555 I ZN ZN . B ZN 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
metalc ? metalc27 B SG CYS 39 B CYS 1267 1_555 I ZN ZN . B ZN 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc28 B SG CYS 52 B CYS 1280 1_555 J ZN ZN . B ZN 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
metalc ? metalc29 B O PRO 53 B PRO 1281 1_555 M NA NA . B NA 1405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? 
metalc ? metalc30 B NE2 HIS 55 B HIS 1283 1_555 J ZN ZN . B ZN 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
metalc ? metalc31 B O HIS 56 B HIS 1284 1_555 M NA NA . B NA 1405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? 
metalc ? metalc32 B SG CYS 57 B CYS 1285 1_555 L ZN ZN . B ZN 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? 
metalc ? metalc33 B OD1 ASP 58 B ASP 1286 1_555 M NA NA . B NA 1405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? 
metalc ? metalc34 B SG CYS 60 B CYS 1288 1_555 L ZN ZN . B ZN 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? 
metalc ? metalc35 B SG CYS 68 B CYS 1296 1_555 K ZN ZN . B ZN 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? 
metalc ? metalc36 B SG CYS 71 B CYS 1299 1_555 K ZN ZN . B ZN 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
metalc ? metalc37 B O PRO 72 B PRO 1300 1_555 M NA NA . B NA 1405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.725 ? 
metalc ? metalc38 B OG SER 74 B SER 1302 1_555 M NA NA . B NA 1405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? 
metalc ? metalc39 B SG CYS 76 B CYS 1304 1_555 L ZN ZN . B ZN 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? 
metalc ? metalc40 B ND1 HIS 79 B HIS 1307 1_555 L ZN ZN . B ZN 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? 
metalc ? metalc41 B SG CYS 95 B CYS 1323 1_555 K ZN ZN . B ZN 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? 
metalc ? metalc42 B NE2 HIS 98 B HIS 1326 1_555 K ZN ZN . B ZN 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     9GBF 
_atom_sites.fract_transf_matrix[1][1]    0.027677 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004706 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0221 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016726 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 1401 1340 ZN ZN . 
D 2 ZN A 1 1402 1341 ZN ZN . 
E 2 ZN A 1 1403 1342 ZN ZN . 
F 2 ZN A 1 1404 1343 ZN ZN . 
G 3 NA A 1 1405 1345 NA NA . 
H 4 PEG A 1 1406 1346 PEG PEG . 
I 2 ZN B 1 1401 1340 ZN ZN . 
J 2 ZN B 1 1402 1341 ZN ZN . 
K 2 ZN B 1 1403 1342 ZN ZN . 
L 2 ZN B 1 1404 1343 ZN ZN . 
M 3 NA B 1 1405 1345 NA NA . 
N 5 EPE B 1 1406 1346 EPE EPE . 
O 6 HOH A 1 1501 18 HOH HOH . 
O 6 HOH A 2 1502 45 HOH HOH . 
O 6 HOH A 3 1503 32 HOH HOH . 
O 6 HOH A 4 1504 1 HOH HOH . 
O 6 HOH A 5 1505 22 HOH HOH . 
O 6 HOH A 6 1506 2 HOH HOH . 
O 6 HOH A 7 1507 46 HOH HOH . 
O 6 HOH A 8 1508 33 HOH HOH . 
O 6 HOH A 9 1509 3 HOH HOH . 
O 6 HOH A 10 1510 29 HOH HOH . 
O 6 HOH A 11 1511 37 HOH HOH . 
O 6 HOH A 12 1512 53 HOH HOH . 
O 6 HOH A 13 1513 9 HOH HOH . 
O 6 HOH A 14 1514 42 HOH HOH . 
O 6 HOH A 15 1515 47 HOH HOH . 
O 6 HOH A 16 1516 25 HOH HOH . 
O 6 HOH A 17 1517 28 HOH HOH . 
O 6 HOH A 18 1518 17 HOH HOH . 
O 6 HOH A 19 1519 4 HOH HOH . 
O 6 HOH A 20 1520 54 HOH HOH . 
O 6 HOH A 21 1521 39 HOH HOH . 
O 6 HOH A 22 1522 57 HOH HOH . 
O 6 HOH A 23 1523 7 HOH HOH . 
O 6 HOH A 24 1524 55 HOH HOH . 
O 6 HOH A 25 1525 21 HOH HOH . 
P 6 HOH B 1 1501 34 HOH HOH . 
P 6 HOH B 2 1502 44 HOH HOH . 
P 6 HOH B 3 1503 13 HOH HOH . 
P 6 HOH B 4 1504 68 HOH HOH . 
P 6 HOH B 5 1505 11 HOH HOH . 
P 6 HOH B 6 1506 52 HOH HOH . 
P 6 HOH B 7 1507 31 HOH HOH . 
P 6 HOH B 8 1508 15 HOH HOH . 
P 6 HOH B 9 1509 73 HOH HOH . 
P 6 HOH B 10 1510 12 HOH HOH . 
P 6 HOH B 11 1511 5 HOH HOH . 
P 6 HOH B 12 1512 65 HOH HOH . 
P 6 HOH B 13 1513 66 HOH HOH . 
P 6 HOH B 14 1514 43 HOH HOH . 
P 6 HOH B 15 1515 27 HOH HOH . 
P 6 HOH B 16 1516 58 HOH HOH . 
P 6 HOH B 17 1517 40 HOH HOH . 
P 6 HOH B 18 1518 6 HOH HOH . 
P 6 HOH B 19 1519 23 HOH HOH . 
P 6 HOH B 20 1520 26 HOH HOH . 
P 6 HOH B 21 1521 64 HOH HOH . 
P 6 HOH B 22 1522 49 HOH HOH . 
P 6 HOH B 23 1523 41 HOH HOH . 
P 6 HOH B 24 1524 69 HOH HOH . 
P 6 HOH B 25 1525 48 HOH HOH . 
P 6 HOH B 26 1526 63 HOH HOH . 
P 6 HOH B 27 1527 51 HOH HOH . 
P 6 HOH B 28 1528 70 HOH HOH . 
P 6 HOH B 29 1529 14 HOH HOH . 
P 6 HOH B 30 1530 8 HOH HOH . 
P 6 HOH B 31 1531 71 HOH HOH . 
P 6 HOH B 32 1532 35 HOH HOH . 
P 6 HOH B 33 1533 19 HOH HOH . 
P 6 HOH B 34 1534 10 HOH HOH . 
P 6 HOH B 35 1535 16 HOH HOH . 
P 6 HOH B 36 1536 61 HOH HOH . 
P 6 HOH B 37 1537 67 HOH HOH . 
P 6 HOH B 38 1538 50 HOH HOH . 
P 6 HOH B 39 1539 38 HOH HOH . 
P 6 HOH B 40 1540 20 HOH HOH . 
P 6 HOH B 41 1541 30 HOH HOH . 
P 6 HOH B 42 1542 24 HOH HOH . 
P 6 HOH B 43 1543 36 HOH HOH . 
P 6 HOH B 44 1544 56 HOH HOH . 
P 6 HOH B 45 1545 60 HOH HOH . 
P 6 HOH B 46 1546 62 HOH HOH . 
P 6 HOH B 47 1547 59 HOH HOH . 
P 6 HOH B 48 1548 72 HOH HOH . 
P 6 HOH B 49 1549 75 HOH HOH . 
P 6 HOH B 50 1550 74 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         L 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               4.505 
_atom_site.Cartn_y               -1.287 
_atom_site.Cartn_z               15.468 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        18.24 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           1404 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           243 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#