data_9GBH # _model_server_result.job_id cAKqGtPecdxPFLJlJzWGOQ _model_server_result.datetime_utc '2024-12-01 18:23:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9gbh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 9GBH # _exptl.entry_id 9GBH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9GBH _cell.length_a 74.093 _cell.length_b 74.093 _cell.length_c 49.647 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9GBH _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 30 AAA CYS 42 1_555 A SG CYS 46 AAA CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? disulf ? disulf2 A SG CYS 123 AAA CYS 136 1_555 A SG CYS 188 AAA CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf3 A SG CYS 154 AAA CYS 168 1_555 A SG CYS 167 AAA CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A ND2 ASN 59 AAA ASN 72 1_555 C C1 NAG . AAA NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale2 A ND2 ASN 82 AAA ASN 95 1_555 B C1 NAG . AAA NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? metalc ? metalc1 A NE2 HIS 10 AAA HIS 25 1_555 F ZN ZN . AAA ZN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc2 A OE2 GLU 64 AAA GLU 78 1_555 F ZN ZN . AAA ZN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.874 ? metalc ? metalc3 A OE2 GLU 71 AAA GLU 84 1_555 F ZN ZN . AAA ZN 305 2_545 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? metalc ? metalc4 A NZ LYS 96 AAA LYS 109 1_555 F ZN ZN . AAA ZN 305 2_545 ? A ? ? ? ? ? ? ? ? ? ? 2.164 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 287 n n C1 O1 NAG sing 288 n n C1 O5 NAG sing 289 n n C1 H1 NAG sing 290 n n C2 C3 NAG sing 291 n n C2 N2 NAG sing 292 n n C2 H2 NAG sing 293 n n C3 C4 NAG sing 294 n n C3 O3 NAG sing 295 n n C3 H3 NAG sing 296 n n C4 C5 NAG sing 297 n n C4 O4 NAG sing 298 n n C4 H4 NAG sing 299 n n C5 C6 NAG sing 300 n n C5 O5 NAG sing 301 n n C5 H5 NAG sing 302 n n C6 O6 NAG sing 303 n n C6 H61 NAG sing 304 n n C6 H62 NAG sing 305 n n C7 C8 NAG sing 306 n n C7 N2 NAG sing 307 n n C7 O7 NAG doub 308 n n C8 H81 NAG sing 309 n n C8 H82 NAG sing 310 n n C8 H83 NAG sing 311 n n N2 HN2 NAG sing 312 n n O1 HO1 NAG sing 313 n n O3 HO3 NAG sing 314 n n O4 HO4 NAG sing 315 n n O6 HO6 NAG sing 316 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 9GBH _atom_sites.fract_transf_matrix[1][1] 0.013497 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013497 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020142 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG AAA 1 301 302 NAG NAG . C 2 NAG AAA 1 302 301 NAG NAG . D 2 NAG AAA 1 303 303 NAG NAG . E 3 A1IJV AAA 1 304 301 A1IJV LIG . F 4 ZN AAA 1 305 1 ZN ZN . G 5 HOH AAA 1 401 120 HOH HOH . G 5 HOH AAA 2 402 93 HOH HOH . G 5 HOH AAA 3 403 73 HOH HOH . G 5 HOH AAA 4 404 87 HOH HOH . G 5 HOH AAA 5 405 107 HOH HOH . G 5 HOH AAA 6 406 4 HOH HOH . G 5 HOH AAA 7 407 9 HOH HOH . G 5 HOH AAA 8 408 80 HOH HOH . G 5 HOH AAA 9 409 52 HOH HOH . G 5 HOH AAA 10 410 14 HOH HOH . G 5 HOH AAA 11 411 19 HOH HOH . G 5 HOH AAA 12 412 124 HOH HOH . G 5 HOH AAA 13 413 37 HOH HOH . G 5 HOH AAA 14 414 31 HOH HOH . G 5 HOH AAA 15 415 84 HOH HOH . G 5 HOH AAA 16 416 65 HOH HOH . G 5 HOH AAA 17 417 58 HOH HOH . G 5 HOH AAA 18 418 95 HOH HOH . G 5 HOH AAA 19 419 35 HOH HOH . G 5 HOH AAA 20 420 81 HOH HOH . G 5 HOH AAA 21 421 18 HOH HOH . G 5 HOH AAA 22 422 21 HOH HOH . G 5 HOH AAA 23 423 88 HOH HOH . G 5 HOH AAA 24 424 55 HOH HOH . G 5 HOH AAA 25 425 11 HOH HOH . G 5 HOH AAA 26 426 115 HOH HOH . G 5 HOH AAA 27 427 91 HOH HOH . G 5 HOH AAA 28 428 111 HOH HOH . G 5 HOH AAA 29 429 74 HOH HOH . G 5 HOH AAA 30 430 7 HOH HOH . G 5 HOH AAA 31 431 102 HOH HOH . G 5 HOH AAA 32 432 45 HOH HOH . G 5 HOH AAA 33 433 10 HOH HOH . G 5 HOH AAA 34 434 26 HOH HOH . G 5 HOH AAA 35 435 22 HOH HOH . G 5 HOH AAA 36 436 6 HOH HOH . G 5 HOH AAA 37 437 17 HOH HOH . G 5 HOH AAA 38 438 27 HOH HOH . G 5 HOH AAA 39 439 86 HOH HOH . G 5 HOH AAA 40 440 113 HOH HOH . G 5 HOH AAA 41 441 104 HOH HOH . G 5 HOH AAA 42 442 51 HOH HOH . G 5 HOH AAA 43 443 3 HOH HOH . G 5 HOH AAA 44 444 56 HOH HOH . G 5 HOH AAA 45 445 44 HOH HOH . G 5 HOH AAA 46 446 79 HOH HOH . G 5 HOH AAA 47 447 47 HOH HOH . G 5 HOH AAA 48 448 41 HOH HOH . G 5 HOH AAA 49 449 32 HOH HOH . G 5 HOH AAA 50 450 29 HOH HOH . G 5 HOH AAA 51 451 109 HOH HOH . G 5 HOH AAA 52 452 98 HOH HOH . G 5 HOH AAA 53 453 57 HOH HOH . G 5 HOH AAA 54 454 25 HOH HOH . G 5 HOH AAA 55 455 36 HOH HOH . G 5 HOH AAA 56 456 75 HOH HOH . G 5 HOH AAA 57 457 108 HOH HOH . G 5 HOH AAA 58 458 28 HOH HOH . G 5 HOH AAA 59 459 70 HOH HOH . G 5 HOH AAA 60 460 33 HOH HOH . G 5 HOH AAA 61 461 49 HOH HOH . G 5 HOH AAA 62 462 68 HOH HOH . G 5 HOH AAA 63 463 1 HOH HOH . G 5 HOH AAA 64 464 96 HOH HOH . G 5 HOH AAA 65 465 23 HOH HOH . G 5 HOH AAA 66 466 16 HOH HOH . G 5 HOH AAA 67 467 116 HOH HOH . G 5 HOH AAA 68 468 99 HOH HOH . G 5 HOH AAA 69 469 126 HOH HOH . G 5 HOH AAA 70 470 59 HOH HOH . G 5 HOH AAA 71 471 77 HOH HOH . G 5 HOH AAA 72 472 90 HOH HOH . G 5 HOH AAA 73 473 67 HOH HOH . G 5 HOH AAA 74 474 53 HOH HOH . G 5 HOH AAA 75 475 2 HOH HOH . G 5 HOH AAA 76 476 40 HOH HOH . G 5 HOH AAA 77 477 50 HOH HOH . G 5 HOH AAA 78 478 34 HOH HOH . G 5 HOH AAA 79 479 38 HOH HOH . G 5 HOH AAA 80 480 48 HOH HOH . G 5 HOH AAA 81 481 101 HOH HOH . G 5 HOH AAA 82 482 13 HOH HOH . G 5 HOH AAA 83 483 15 HOH HOH . G 5 HOH AAA 84 484 62 HOH HOH . G 5 HOH AAA 85 485 125 HOH HOH . G 5 HOH AAA 86 486 122 HOH HOH . G 5 HOH AAA 87 487 61 HOH HOH . G 5 HOH AAA 88 488 24 HOH HOH . G 5 HOH AAA 89 489 121 HOH HOH . G 5 HOH AAA 90 490 119 HOH HOH . G 5 HOH AAA 91 491 97 HOH HOH . G 5 HOH AAA 92 492 118 HOH HOH . G 5 HOH AAA 93 493 12 HOH HOH . G 5 HOH AAA 94 494 20 HOH HOH . G 5 HOH AAA 95 495 54 HOH HOH . G 5 HOH AAA 96 496 94 HOH HOH . G 5 HOH AAA 97 497 5 HOH HOH . G 5 HOH AAA 98 498 46 HOH HOH . G 5 HOH AAA 99 499 64 HOH HOH . G 5 HOH AAA 100 500 123 HOH HOH . G 5 HOH AAA 101 501 71 HOH HOH . G 5 HOH AAA 102 502 72 HOH HOH . G 5 HOH AAA 103 503 63 HOH HOH . G 5 HOH AAA 104 504 43 HOH HOH . G 5 HOH AAA 105 505 78 HOH HOH . G 5 HOH AAA 106 506 100 HOH HOH . G 5 HOH AAA 107 507 69 HOH HOH . G 5 HOH AAA 108 508 110 HOH HOH . G 5 HOH AAA 109 509 105 HOH HOH . G 5 HOH AAA 110 510 30 HOH HOH . G 5 HOH AAA 111 511 39 HOH HOH . G 5 HOH AAA 112 512 85 HOH HOH . G 5 HOH AAA 113 513 66 HOH HOH . G 5 HOH AAA 114 514 83 HOH HOH . G 5 HOH AAA 115 515 8 HOH HOH . G 5 HOH AAA 116 516 106 HOH HOH . G 5 HOH AAA 117 517 117 HOH HOH . G 5 HOH AAA 118 518 60 HOH HOH . G 5 HOH AAA 119 519 82 HOH HOH . G 5 HOH AAA 120 520 103 HOH HOH . G 5 HOH AAA 121 521 76 HOH HOH . G 5 HOH AAA 122 522 42 HOH HOH . G 5 HOH AAA 123 523 112 HOH HOH . G 5 HOH AAA 124 524 92 HOH HOH . G 5 HOH AAA 125 525 114 HOH HOH . G 5 HOH AAA 126 526 89 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . C 2 -14.111 -43.318 -15.401 1 58.4 0 C1 NAG 302 AAA 1 HETATM 2 C C2 NAG . . . C 2 -15.251 -43.617 -16.377 1 60.5 0 C2 NAG 302 AAA 1 HETATM 3 C C3 NAG . . . C 2 -16.212 -44.609 -15.715 1 63.2 0 C3 NAG 302 AAA 1 HETATM 4 C C4 NAG . . . C 2 -15.467 -45.853 -15.241 1 62.97 0 C4 NAG 302 AAA 1 HETATM 5 C C5 NAG . . . C 2 -14.185 -45.523 -14.475 1 69.31 0 C5 NAG 302 AAA 1 HETATM 6 C C6 NAG . . . C 2 -13.289 -46.74 -14.282 1 69.97 0 C6 NAG 302 AAA 1 HETATM 7 C C7 NAG . . . C 2 -15.769 -41.706 -17.91 1 64.36 0 C7 NAG 302 AAA 1 HETATM 8 C C8 NAG . . . C 2 -14.584 -42.034 -18.772 1 69.25 0 C8 NAG 302 AAA 1 HETATM 9 N N2 NAG . . . C 2 -15.946 -42.416 -16.792 1 58.92 0 N2 NAG 302 AAA 1 HETATM 10 O O3 NAG . . . C 2 -17.264 -44.985 -16.601 1 63.49 0 O3 NAG 302 AAA 1 HETATM 11 O O4 NAG . . . C 2 -16.322 -46.559 -14.348 1 65.26 0 O4 NAG 302 AAA 1 HETATM 12 O O5 NAG . . . C 2 -13.405 -44.528 -15.168 1 61.44 0 O5 NAG 302 AAA 1 HETATM 13 O O6 NAG . . . C 2 -12.739 -47.212 -15.522 1 71.32 0 O6 NAG 302 AAA 1 HETATM 14 O O7 NAG . . . C 2 -16.544 -40.801 -18.202 1 57.09 0 O7 NAG 302 AAA 1 # _model_server_stats.io_time_ms 95 _model_server_stats.parse_time_ms 165 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 1004 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 14 #