data_9GBH # _model_server_result.job_id eNDMX04fiUB8MBGdt4m5Eg _model_server_result.datetime_utc '2024-11-29 12:49:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9gbh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 9GBH # _exptl.entry_id 9GBH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 451.353 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(3,4-dimethoxyphenyl)-3,5-bis(oxidanylidene)-4-[[3-(trifluoromethyl)phenyl]methyl]-1,2,4-triazine-6-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9GBH _cell.length_a 74.093 _cell.length_b 74.093 _cell.length_c 49.647 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9GBH _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 30 AAA CYS 42 1_555 A SG CYS 46 AAA CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? disulf ? disulf2 A SG CYS 123 AAA CYS 136 1_555 A SG CYS 188 AAA CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf3 A SG CYS 154 AAA CYS 168 1_555 A SG CYS 167 AAA CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A ND2 ASN 59 AAA ASN 72 1_555 C C1 NAG . AAA NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale2 A ND2 ASN 82 AAA ASN 95 1_555 B C1 NAG . AAA NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? metalc ? metalc1 A NE2 HIS 10 AAA HIS 25 1_555 F ZN ZN . AAA ZN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc2 A OE2 GLU 64 AAA GLU 78 1_555 F ZN ZN . AAA ZN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.874 ? metalc ? metalc3 A OE2 GLU 71 AAA GLU 84 1_555 F ZN ZN . AAA ZN 305 2_545 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? metalc ? metalc4 A NZ LYS 96 AAA LYS 109 1_555 F ZN ZN . AAA ZN 305 2_545 ? A ? ? ? ? ? ? ? ? ? ? 2.164 ? # _chem_comp.formula ? _chem_comp.formula_weight 451.353 _chem_comp.id A1IJV _chem_comp.mon_nstd_flag . _chem_comp.name '2-(3,4-dimethoxyphenyl)-3,5-bis(oxidanylidene)-4-[[3-(trifluoromethyl)phenyl]methyl]-1,2,4-triazine-6-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C29 F31 A1IJV sing 1 n n C29 F32 A1IJV sing 2 n n C29 F30 A1IJV sing 3 n n C12 C29 A1IJV sing 4 n n C12 C28 A1IJV sing 5 n y C12 C14 A1IJV doub 6 n y C27 C28 A1IJV doub 7 n y C14 C25 A1IJV sing 8 n y C25 C26 A1IJV doub 9 n y C27 C26 A1IJV sing 10 n y C27 C13 A1IJV sing 11 n n N1 C13 A1IJV sing 12 n n N1 C2 A1IJV sing 13 n n N1 C6 A1IJV sing 14 n n C2 O8 A1IJV doub 15 n n C2 N3 A1IJV sing 16 n n C6 O7 A1IJV doub 17 n n C6 C5 A1IJV sing 18 n n C5 C9 A1IJV sing 19 n n C5 N4 A1IJV doub 20 n n C9 O10 A1IJV doub 21 n n C9 O11 A1IJV sing 22 n n N3 N4 A1IJV sing 23 n n N3 C19 A1IJV sing 24 n n C19 C18 A1IJV sing 25 n y C19 C20 A1IJV doub 26 n y C17 C18 A1IJV doub 27 n y C20 C15 A1IJV sing 28 n y C16 C15 A1IJV doub 29 n y C16 O21 A1IJV sing 30 n n C16 C17 A1IJV sing 31 n y O21 C22 A1IJV sing 32 n n C17 O23 A1IJV sing 33 n n O23 C24 A1IJV sing 34 n n C13 H13 A1IJV sing 35 n n C13 H29 A1IJV sing 36 n n C15 H15 A1IJV sing 37 n n C20 H20 A1IJV sing 38 n n C22 H28 A1IJV sing 39 n n C22 H27 A1IJV sing 40 n n C22 H22 A1IJV sing 41 n n C24 H26 A1IJV sing 42 n n C24 H24 A1IJV sing 43 n n C24 H25 A1IJV sing 44 n n C26 H3B A1IJV sing 45 n n C28 H3A A1IJV sing 46 n n C14 H14 A1IJV sing 47 n n C25 H3C A1IJV sing 48 n n O11 H1 A1IJV sing 49 n n C18 H18 A1IJV sing 50 n n # _atom_sites.entry_id 9GBH _atom_sites.fract_transf_matrix[1][1] 0.013497 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013497 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020142 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG AAA 1 301 302 NAG NAG . C 2 NAG AAA 1 302 301 NAG NAG . D 2 NAG AAA 1 303 303 NAG NAG . E 3 A1IJV AAA 1 304 301 A1IJV LIG . F 4 ZN AAA 1 305 1 ZN ZN . G 5 HOH AAA 1 401 120 HOH HOH . G 5 HOH AAA 2 402 93 HOH HOH . G 5 HOH AAA 3 403 73 HOH HOH . G 5 HOH AAA 4 404 87 HOH HOH . G 5 HOH AAA 5 405 107 HOH HOH . G 5 HOH AAA 6 406 4 HOH HOH . G 5 HOH AAA 7 407 9 HOH HOH . G 5 HOH AAA 8 408 80 HOH HOH . G 5 HOH AAA 9 409 52 HOH HOH . G 5 HOH AAA 10 410 14 HOH HOH . G 5 HOH AAA 11 411 19 HOH HOH . G 5 HOH AAA 12 412 124 HOH HOH . G 5 HOH AAA 13 413 37 HOH HOH . G 5 HOH AAA 14 414 31 HOH HOH . G 5 HOH AAA 15 415 84 HOH HOH . G 5 HOH AAA 16 416 65 HOH HOH . G 5 HOH AAA 17 417 58 HOH HOH . G 5 HOH AAA 18 418 95 HOH HOH . G 5 HOH AAA 19 419 35 HOH HOH . G 5 HOH AAA 20 420 81 HOH HOH . G 5 HOH AAA 21 421 18 HOH HOH . G 5 HOH AAA 22 422 21 HOH HOH . G 5 HOH AAA 23 423 88 HOH HOH . G 5 HOH AAA 24 424 55 HOH HOH . G 5 HOH AAA 25 425 11 HOH HOH . G 5 HOH AAA 26 426 115 HOH HOH . G 5 HOH AAA 27 427 91 HOH HOH . G 5 HOH AAA 28 428 111 HOH HOH . G 5 HOH AAA 29 429 74 HOH HOH . G 5 HOH AAA 30 430 7 HOH HOH . G 5 HOH AAA 31 431 102 HOH HOH . G 5 HOH AAA 32 432 45 HOH HOH . G 5 HOH AAA 33 433 10 HOH HOH . G 5 HOH AAA 34 434 26 HOH HOH . G 5 HOH AAA 35 435 22 HOH HOH . G 5 HOH AAA 36 436 6 HOH HOH . G 5 HOH AAA 37 437 17 HOH HOH . G 5 HOH AAA 38 438 27 HOH HOH . G 5 HOH AAA 39 439 86 HOH HOH . G 5 HOH AAA 40 440 113 HOH HOH . G 5 HOH AAA 41 441 104 HOH HOH . G 5 HOH AAA 42 442 51 HOH HOH . G 5 HOH AAA 43 443 3 HOH HOH . G 5 HOH AAA 44 444 56 HOH HOH . G 5 HOH AAA 45 445 44 HOH HOH . G 5 HOH AAA 46 446 79 HOH HOH . G 5 HOH AAA 47 447 47 HOH HOH . G 5 HOH AAA 48 448 41 HOH HOH . G 5 HOH AAA 49 449 32 HOH HOH . G 5 HOH AAA 50 450 29 HOH HOH . G 5 HOH AAA 51 451 109 HOH HOH . G 5 HOH AAA 52 452 98 HOH HOH . G 5 HOH AAA 53 453 57 HOH HOH . G 5 HOH AAA 54 454 25 HOH HOH . G 5 HOH AAA 55 455 36 HOH HOH . G 5 HOH AAA 56 456 75 HOH HOH . G 5 HOH AAA 57 457 108 HOH HOH . G 5 HOH AAA 58 458 28 HOH HOH . G 5 HOH AAA 59 459 70 HOH HOH . G 5 HOH AAA 60 460 33 HOH HOH . G 5 HOH AAA 61 461 49 HOH HOH . G 5 HOH AAA 62 462 68 HOH HOH . G 5 HOH AAA 63 463 1 HOH HOH . G 5 HOH AAA 64 464 96 HOH HOH . G 5 HOH AAA 65 465 23 HOH HOH . G 5 HOH AAA 66 466 16 HOH HOH . G 5 HOH AAA 67 467 116 HOH HOH . G 5 HOH AAA 68 468 99 HOH HOH . G 5 HOH AAA 69 469 126 HOH HOH . G 5 HOH AAA 70 470 59 HOH HOH . G 5 HOH AAA 71 471 77 HOH HOH . G 5 HOH AAA 72 472 90 HOH HOH . G 5 HOH AAA 73 473 67 HOH HOH . G 5 HOH AAA 74 474 53 HOH HOH . G 5 HOH AAA 75 475 2 HOH HOH . G 5 HOH AAA 76 476 40 HOH HOH . G 5 HOH AAA 77 477 50 HOH HOH . G 5 HOH AAA 78 478 34 HOH HOH . G 5 HOH AAA 79 479 38 HOH HOH . G 5 HOH AAA 80 480 48 HOH HOH . G 5 HOH AAA 81 481 101 HOH HOH . G 5 HOH AAA 82 482 13 HOH HOH . G 5 HOH AAA 83 483 15 HOH HOH . G 5 HOH AAA 84 484 62 HOH HOH . G 5 HOH AAA 85 485 125 HOH HOH . G 5 HOH AAA 86 486 122 HOH HOH . G 5 HOH AAA 87 487 61 HOH HOH . G 5 HOH AAA 88 488 24 HOH HOH . G 5 HOH AAA 89 489 121 HOH HOH . G 5 HOH AAA 90 490 119 HOH HOH . G 5 HOH AAA 91 491 97 HOH HOH . G 5 HOH AAA 92 492 118 HOH HOH . G 5 HOH AAA 93 493 12 HOH HOH . G 5 HOH AAA 94 494 20 HOH HOH . G 5 HOH AAA 95 495 54 HOH HOH . G 5 HOH AAA 96 496 94 HOH HOH . G 5 HOH AAA 97 497 5 HOH HOH . G 5 HOH AAA 98 498 46 HOH HOH . G 5 HOH AAA 99 499 64 HOH HOH . G 5 HOH AAA 100 500 123 HOH HOH . G 5 HOH AAA 101 501 71 HOH HOH . G 5 HOH AAA 102 502 72 HOH HOH . G 5 HOH AAA 103 503 63 HOH HOH . G 5 HOH AAA 104 504 43 HOH HOH . G 5 HOH AAA 105 505 78 HOH HOH . G 5 HOH AAA 106 506 100 HOH HOH . G 5 HOH AAA 107 507 69 HOH HOH . G 5 HOH AAA 108 508 110 HOH HOH . G 5 HOH AAA 109 509 105 HOH HOH . G 5 HOH AAA 110 510 30 HOH HOH . G 5 HOH AAA 111 511 39 HOH HOH . G 5 HOH AAA 112 512 85 HOH HOH . G 5 HOH AAA 113 513 66 HOH HOH . G 5 HOH AAA 114 514 83 HOH HOH . G 5 HOH AAA 115 515 8 HOH HOH . G 5 HOH AAA 116 516 106 HOH HOH . G 5 HOH AAA 117 517 117 HOH HOH . G 5 HOH AAA 118 518 60 HOH HOH . G 5 HOH AAA 119 519 82 HOH HOH . G 5 HOH AAA 120 520 103 HOH HOH . G 5 HOH AAA 121 521 76 HOH HOH . G 5 HOH AAA 122 522 42 HOH HOH . G 5 HOH AAA 123 523 112 HOH HOH . G 5 HOH AAA 124 524 92 HOH HOH . G 5 HOH AAA 125 525 114 HOH HOH . G 5 HOH AAA 126 526 89 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 A1IJV . . . E 3 -24.684 -26.114 0.254 1 42.63 0 N1 A1IJV 304 AAA 1 HETATM 2 N N3 A1IJV . . . E 3 -25.364 -24.565 1.972 1 43.28 0 N3 A1IJV 304 AAA 1 HETATM 3 C C5 A1IJV . . . E 3 -26.535 -26.442 1.729 1 40.56 0 C5 A1IJV 304 AAA 1 HETATM 4 C C6 A1IJV . . . E 3 -25.768 -26.893 0.648 1 44.9 0 C6 A1IJV 304 AAA 1 HETATM 5 C C13 A1IJV . . . E 3 -23.837 -26.592 -0.822 1 42.08 0 C13 A1IJV 304 AAA 1 HETATM 6 C C15 A1IJV . . . E 3 -23.97 -21.729 3.855 1 47.47 0 C15 A1IJV 304 AAA 1 HETATM 7 C C17 A1IJV . . . E 3 -26.214 -21.273 3.115 1 42.53 0 C17 A1IJV 304 AAA 1 HETATM 8 C C20 A1IJV . . . E 3 -24.002 -23.015 3.262 1 40.37 0 C20 A1IJV 304 AAA 1 HETATM 9 C C22 A1IJV . . . E 3 -23.789 -19.05 4.716 1 46.78 0 C22 A1IJV 304 AAA 1 HETATM 10 C C24 A1IJV . . . E 3 -28.49 -20.967 2.562 1 47.97 0 C24 A1IJV 304 AAA 1 HETATM 11 C C26 A1IJV . . . E 3 -25.296 -25.541 -2.643 1 39.14 0 C26 A1IJV 304 AAA 1 HETATM 12 C C28 A1IJV . . . E 3 -22.823 -25.346 -2.704 1 35.94 0 C28 A1IJV 304 AAA 1 HETATM 13 F F31 A1IJV . . . E 3 -20.667 -25.028 -4.904 1 37.98 0 F31 A1IJV 304 AAA 1 HETATM 14 C C29 A1IJV . . . E 3 -21.61 -24.127 -4.57 1 38.98 0 C29 A1IJV 304 AAA 1 HETATM 15 F F32 A1IJV . . . E 3 -21.925 -23.467 -5.627 1 38.03 0 F32 A1IJV 304 AAA 1 HETATM 16 F F30 A1IJV . . . E 3 -21.111 -23.266 -3.738 1 37.87 0 F30 A1IJV 304 AAA 1 HETATM 17 C C12 A1IJV . . . E 3 -22.906 -24.661 -3.915 1 39.41 0 C12 A1IJV 304 AAA 1 HETATM 18 C C14 A1IJV . . . E 3 -24.175 -24.394 -4.459 1 42.77 0 C14 A1IJV 304 AAA 1 HETATM 19 C C25 A1IJV . . . E 3 -25.364 -24.845 -3.856 1 41.52 0 C25 A1IJV 304 AAA 1 HETATM 20 C C27 A1IJV . . . E 3 -23.997 -25.799 -2.108 1 45.51 0 C27 A1IJV 304 AAA 1 HETATM 21 C C2 A1IJV . . . E 3 -24.469 -24.912 0.922 1 42.54 0 C2 A1IJV 304 AAA 1 HETATM 22 O O8 A1IJV . . . E 3 -23.549 -24.159 0.612 1 38 0 O8 A1IJV 304 AAA 1 HETATM 23 O O7 A1IJV . . . E 3 -25.99 -27.954 0.047 1 45.33 0 O7 A1IJV 304 AAA 1 HETATM 24 C C9 A1IJV . . . E 3 -27.727 -27.232 2.334 1 42.53 0 C9 A1IJV 304 AAA 1 HETATM 25 O O10 A1IJV . . . E 3 -27.628 -28.456 2.252 1 48.55 0 O10 A1IJV 304 AAA 1 HETATM 26 O O11 A1IJV . . . E 3 -28.573 -26.674 3.05 1 37.92 0 O11 A1IJV 304 AAA 1 HETATM 27 N N4 A1IJV . . . E 3 -26.278 -25.285 2.306 1 38.75 0 N4 A1IJV 304 AAA 1 HETATM 28 C C19 A1IJV . . . E 3 -25.192 -23.383 2.632 1 39.86 0 C19 A1IJV 304 AAA 1 HETATM 29 C C18 A1IJV . . . E 3 -26.272 -22.533 2.536 1 39.01 0 C18 A1IJV 304 AAA 1 HETATM 30 C C16 A1IJV . . . E 3 -25.063 -20.843 3.769 1 45.74 0 C16 A1IJV 304 AAA 1 HETATM 31 O O21 A1IJV . . . E 3 -25.078 -19.567 4.307 1 47.7 0 O21 A1IJV 304 AAA 1 HETATM 32 O O23 A1IJV . . . E 3 -27.269 -20.42 3.05 1 47.36 0 O23 A1IJV 304 AAA 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #