data_9GBL # _model_server_result.job_id WUpxnGAPXKFLvFUIMHQxRw _model_server_result.datetime_utc '2025-02-01 22:09:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9gbl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 9GBL # _exptl.entry_id 9GBL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9GBL _cell.length_a 56.821 _cell.length_b 85.683 _cell.length_c 135.12 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9GBL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG B 1 NAG 2 n B NAG 2 B 2 NAG B 2 NAG 2 n B BMA 3 B 3 BMA B 3 BMA 2 n B FUC 4 B 4 FUC B 5 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 116 A CYS 152 1_555 A SG CYS 122 A CYS 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? disulf ? disulf2 A SG CYS 316 A CYS 352 1_555 A SG CYS 334 A CYS 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? disulf ? disulf3 A SG CYS 502 A CYS 538 1_555 A SG CYS 514 A CYS 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? covale ? covale1 A ND2 ASN 73 A ASN 109 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? covale ? covale2 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.386 ? covale ? covale3 B O6 NAG . B NAG 1 1_555 B C1 FUC . B FUC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.395 ? covale ? covale4 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.395 ? metalc ? metalc1 A NE2 HIS 347 A HIS 383 1_555 C ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? metalc ? metalc2 A NE2 HIS 351 A HIS 387 1_555 C ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.915 ? metalc ? metalc3 A OE1 GLU 375 A GLU 411 1_555 C ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? metalc ? metalc4 C ZN ZN . A ZN 701 1_555 F O24 A1IJY . A A1IJY 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc5 C ZN ZN . A ZN 701 1_555 F O23 A1IJY . A A1IJY 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 9GBL _atom_sites.fract_transf_matrix[1][1] 0.017599 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011671 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007401 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 701 705 ZN ZN . D 4 CL A 1 702 706 CL CL . E 4 CL A 1 703 707 CL CL . F 5 A1IJY A 1 704 959 A1IJY SG2 . G 6 HOH A 1 801 801 HOH HOH . G 6 HOH A 2 802 802 HOH HOH . G 6 HOH A 3 803 803 HOH HOH . G 6 HOH A 4 804 805 HOH HOH . G 6 HOH A 5 805 814 HOH HOH . G 6 HOH A 6 806 804 HOH HOH . G 6 HOH A 7 807 806 HOH HOH . G 6 HOH A 8 808 807 HOH HOH . G 6 HOH A 9 809 809 HOH HOH . G 6 HOH A 10 810 816 HOH HOH . G 6 HOH A 11 811 823 HOH HOH . G 6 HOH A 12 812 812 HOH HOH . G 6 HOH A 13 813 813 HOH HOH . G 6 HOH A 14 814 818 HOH HOH . G 6 HOH A 15 815 811 HOH HOH . G 6 HOH A 16 816 815 HOH HOH . G 6 HOH A 17 817 808 HOH HOH . G 6 HOH A 18 818 810 HOH HOH . G 6 HOH A 19 819 820 HOH HOH . G 6 HOH A 20 820 817 HOH HOH . G 6 HOH A 21 821 819 HOH HOH . G 6 HOH A 22 822 830 HOH HOH . G 6 HOH A 23 823 829 HOH HOH . G 6 HOH A 24 824 822 HOH HOH . G 6 HOH A 25 825 831 HOH HOH . G 6 HOH A 26 826 827 HOH HOH . G 6 HOH A 27 827 867 HOH HOH . G 6 HOH A 28 828 832 HOH HOH . G 6 HOH A 29 829 828 HOH HOH . G 6 HOH A 30 830 825 HOH HOH . G 6 HOH A 31 831 838 HOH HOH . G 6 HOH A 32 832 833 HOH HOH . G 6 HOH A 33 833 836 HOH HOH . G 6 HOH A 34 834 842 HOH HOH . G 6 HOH A 35 835 834 HOH HOH . G 6 HOH A 36 836 843 HOH HOH . G 6 HOH A 37 837 826 HOH HOH . G 6 HOH A 38 838 821 HOH HOH . G 6 HOH A 39 839 837 HOH HOH . G 6 HOH A 40 840 854 HOH HOH . G 6 HOH A 41 841 839 HOH HOH . G 6 HOH A 42 842 840 HOH HOH . G 6 HOH A 43 843 856 HOH HOH . G 6 HOH A 44 844 859 HOH HOH . G 6 HOH A 45 845 849 HOH HOH . G 6 HOH A 46 846 845 HOH HOH . G 6 HOH A 47 847 848 HOH HOH . G 6 HOH A 48 848 824 HOH HOH . G 6 HOH A 49 849 852 HOH HOH . G 6 HOH A 50 850 847 HOH HOH . G 6 HOH A 51 851 864 HOH HOH . G 6 HOH A 52 852 858 HOH HOH . G 6 HOH A 53 853 857 HOH HOH . G 6 HOH A 54 854 835 HOH HOH . G 6 HOH A 55 855 861 HOH HOH . G 6 HOH A 56 856 878 HOH HOH . G 6 HOH A 57 857 844 HOH HOH . G 6 HOH A 58 858 851 HOH HOH . G 6 HOH A 59 859 853 HOH HOH . G 6 HOH A 60 860 870 HOH HOH . G 6 HOH A 61 861 846 HOH HOH . G 6 HOH A 62 862 841 HOH HOH . G 6 HOH A 63 863 871 HOH HOH . G 6 HOH A 64 864 890 HOH HOH . G 6 HOH A 65 865 863 HOH HOH . G 6 HOH A 66 866 875 HOH HOH . G 6 HOH A 67 867 860 HOH HOH . G 6 HOH A 68 868 865 HOH HOH . G 6 HOH A 69 869 881 HOH HOH . G 6 HOH A 70 870 850 HOH HOH . G 6 HOH A 71 871 868 HOH HOH . G 6 HOH A 72 872 886 HOH HOH . G 6 HOH A 73 873 880 HOH HOH . G 6 HOH A 74 874 862 HOH HOH . G 6 HOH A 75 875 866 HOH HOH . G 6 HOH A 76 876 874 HOH HOH . G 6 HOH A 77 877 869 HOH HOH . G 6 HOH A 78 878 877 HOH HOH . G 6 HOH A 79 879 873 HOH HOH . G 6 HOH A 80 880 882 HOH HOH . G 6 HOH A 81 881 855 HOH HOH . G 6 HOH A 82 882 879 HOH HOH . G 6 HOH A 83 883 872 HOH HOH . G 6 HOH A 84 884 904 HOH HOH . G 6 HOH A 85 885 897 HOH HOH . G 6 HOH A 86 886 901 HOH HOH . G 6 HOH A 87 887 893 HOH HOH . G 6 HOH A 88 888 889 HOH HOH . G 6 HOH A 89 889 902 HOH HOH . G 6 HOH A 90 890 884 HOH HOH . G 6 HOH A 91 891 883 HOH HOH . G 6 HOH A 92 892 876 HOH HOH . G 6 HOH A 93 893 906 HOH HOH . G 6 HOH A 94 894 887 HOH HOH . G 6 HOH A 95 895 885 HOH HOH . G 6 HOH A 96 896 898 HOH HOH . G 6 HOH A 97 897 894 HOH HOH . G 6 HOH A 98 898 900 HOH HOH . G 6 HOH A 99 899 895 HOH HOH . G 6 HOH A 100 900 899 HOH HOH . G 6 HOH A 101 901 905 HOH HOH . G 6 HOH A 102 902 888 HOH HOH . G 6 HOH A 103 903 891 HOH HOH . G 6 HOH A 104 904 892 HOH HOH . G 6 HOH A 105 905 919 HOH HOH . G 6 HOH A 106 906 914 HOH HOH . G 6 HOH A 107 907 917 HOH HOH . G 6 HOH A 108 908 910 HOH HOH . G 6 HOH A 109 909 911 HOH HOH . G 6 HOH A 110 910 907 HOH HOH . G 6 HOH A 111 911 903 HOH HOH . G 6 HOH A 112 912 922 HOH HOH . G 6 HOH A 113 913 912 HOH HOH . G 6 HOH A 114 914 923 HOH HOH . G 6 HOH A 115 915 915 HOH HOH . G 6 HOH A 116 916 913 HOH HOH . G 6 HOH A 117 917 925 HOH HOH . G 6 HOH A 118 918 908 HOH HOH . G 6 HOH A 119 919 896 HOH HOH . G 6 HOH A 120 920 916 HOH HOH . G 6 HOH A 121 921 924 HOH HOH . G 6 HOH A 122 922 927 HOH HOH . G 6 HOH A 123 923 921 HOH HOH . G 6 HOH A 124 924 918 HOH HOH . G 6 HOH A 125 925 920 HOH HOH . G 6 HOH A 126 926 926 HOH HOH . G 6 HOH A 127 927 909 HOH HOH . G 6 HOH A 128 928 932 HOH HOH . G 6 HOH A 129 929 931 HOH HOH . G 6 HOH A 130 930 929 HOH HOH . G 6 HOH A 131 931 928 HOH HOH . G 6 HOH A 132 932 933 HOH HOH . G 6 HOH A 133 933 934 HOH HOH . G 6 HOH A 134 934 937 HOH HOH . G 6 HOH A 135 935 935 HOH HOH . G 6 HOH A 136 936 930 HOH HOH . G 6 HOH A 137 937 938 HOH HOH . G 6 HOH A 138 938 936 HOH HOH . G 6 HOH A 139 939 939 HOH HOH . G 6 HOH A 140 940 940 HOH HOH . G 6 HOH A 141 941 941 HOH HOH . G 6 HOH A 142 942 942 HOH HOH . G 6 HOH A 143 943 944 HOH HOH . G 6 HOH A 144 944 949 HOH HOH . G 6 HOH A 145 945 945 HOH HOH . G 6 HOH A 146 946 947 HOH HOH . G 6 HOH A 147 947 948 HOH HOH . G 6 HOH A 148 948 943 HOH HOH . G 6 HOH A 149 949 946 HOH HOH . G 6 HOH A 150 950 950 HOH HOH . G 6 HOH A 151 951 951 HOH HOH . G 6 HOH A 152 952 952 HOH HOH . G 6 HOH A 153 953 953 HOH HOH . G 6 HOH A 154 954 955 HOH HOH . G 6 HOH A 155 955 954 HOH HOH . G 6 HOH A 156 956 956 HOH HOH . G 6 HOH A 157 957 957 HOH HOH . G 6 HOH A 158 958 958 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -15.454 _atom_site.Cartn_y -3.931 _atom_site.Cartn_z 20.732 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 25.84 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 701 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 44 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #