data_9GCX # _model_server_result.job_id pIVMEkIfY1THNZTaY-76CA _model_server_result.datetime_utc '2025-01-22 19:50:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9gcx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":505}' # _entry.id 9GCX # _exptl.entry_id 9GCX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 417.378 _entity.id 14 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 2-methyl-3-(4-(4-(trifluoromethoxy)phenoxy)phenyl)-1,5,7,8-tetrahydro-4H-pyrano[4,3-b]pyridin-4-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9GCX _cell.length_a 210.082 _cell.length_b 210.082 _cell.length_c 344.844 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9GCX _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 22-meric _pdbx_struct_assembly.oligomeric_count 22 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_445 -y-1,-x-1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 -105.041 -181.936349 57.474 # _struct_asym.details ? _struct_asym.entity_id 14 _struct_asym.id R _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 222 E CYS 144 1_555 E SG CYS 238 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf2 H SG CYS 55 H CYS 24 1_555 H SG CYS 99 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf3 H SG CYS 71 H CYS 40 1_555 H SG CYS 85 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? covale ? covale1 D SG CYS 121 D CYS 37 1_555 V CAB HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.759 ? covale ? covale2 D SG CYS 124 D CYS 40 1_555 V CAC HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.8 ? metalc ? metalc1 C NE2 HIS 83 C HIS 83 1_555 N FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc2 C NE2 HIS 97 C HIS 97 1_555 O FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc3 C NE2 HIS 182 C HIS 182 1_555 N FE HEM . C HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc4 C NE2 HIS 196 C HIS 196 1_555 O FE HEM . C HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc5 D NE2 HIS 125 D HIS 41 1_555 V FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc6 D SD MET 244 D MET 160 1_555 V FE HEC . D HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc7 E SG CYS 217 E CYS 139 1_555 X FE1 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc8 E ND1 HIS 219 E HIS 141 1_555 X FE2 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc9 E SG CYS 236 E CYS 158 1_555 X FE1 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc10 E ND1 HIS 239 E HIS 161 1_555 X FE2 FES . E FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C22 H18 F3 N O4' _chem_comp.formula_weight 417.378 _chem_comp.id A1IKG _chem_comp.mon_nstd_flag . _chem_comp.name 2-methyl-3-(4-(4-(trifluoromethoxy)phenoxy)phenyl)-1,5,7,8-tetrahydro-4H-pyrano[4,3-b]pyridin-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 2-methyl-3-[4-[4-(trifluoromethyloxy)phenoxy]phenyl]-3,5,7,8-tetrahydropyrano[4,3-b]pyridin-4-one # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C17 C16 A1IKG doub 1 n y C17 C11 A1IKG sing 2 n y C16 C14 A1IKG sing 3 n y O2 C11 A1IKG sing 4 n n O2 C10 A1IKG sing 5 n n C11 C12 A1IKG doub 6 n y C14 O3 A1IKG sing 7 n n C14 C13 A1IKG doub 8 n y O3 C15 A1IKG sing 9 n n C12 C13 A1IKG sing 10 n y F2 C15 A1IKG sing 11 n n C18 C10 A1IKG doub 12 n y C18 C19 A1IKG sing 13 n y C10 C9 A1IKG sing 14 n y C15 F3 A1IKG sing 15 n n C15 F1 A1IKG sing 16 n n C19 C7 A1IKG doub 17 n y C9 C8 A1IKG doub 18 n y C7 C8 A1IKG sing 19 n y C7 C6 A1IKG sing 20 n n C1 C2 A1IKG sing 21 n n C6 C2 A1IKG sing 22 n n C6 C5 A1IKG sing 23 n n C2 N1 A1IKG doub 24 n n O1 C5 A1IKG doub 25 n n C5 C4 A1IKG sing 26 n n N1 C3 A1IKG sing 27 n n C4 C3 A1IKG doub 28 n n C4 C20 A1IKG sing 29 n n C3 C22 A1IKG sing 30 n n C20 O4 A1IKG sing 31 n n C22 C21 A1IKG sing 32 n n C21 O4 A1IKG sing 33 n n C9 H1 A1IKG sing 34 n n C12 H2 A1IKG sing 35 n n C16 H3 A1IKG sing 36 n n C1 H4 A1IKG sing 37 n n C1 H5 A1IKG sing 38 n n C1 H6 A1IKG sing 39 n n C6 H7 A1IKG sing 40 n n C8 H8 A1IKG sing 41 n n C13 H9 A1IKG sing 42 n n C17 H10 A1IKG sing 43 n n C18 H11 A1IKG sing 44 n n C19 H12 A1IKG sing 45 n n C20 H13 A1IKG sing 46 n n C20 H14 A1IKG sing 47 n n C21 H15 A1IKG sing 48 n n C21 H16 A1IKG sing 49 n n C22 H17 A1IKG sing 50 n n C22 H18 A1IKG sing 51 n n # _atom_sites.entry_id 9GCX _atom_sites.fract_transf_matrix[1][1] 0.00476 _atom_sites.fract_transf_matrix[1][2] 0.002748 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005496 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0029 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code L 11 LOP A 1 501 501 LOP LOP . M 12 CDL A 1 502 502 CDL CDL . N 13 HEM C 1 501 501 HEM HEM . O 13 HEM C 1 502 502 HEM HEM . P 11 LOP C 1 503 503 LOP LOP . Q 12 CDL C 1 504 504 CDL CDL . R 14 A1IKG C 1 505 509 A1IKG SG1 . S 11 LOP C 1 506 512 LOP LOP . T 11 LOP C 1 507 513 LOP LOP . U 15 LMT C 1 508 515 LMT LMT . V 16 HEC D 1 501 501 HEC HEC . W 12 CDL D 1 502 502 CDL CDL . X 17 FES E 1 201 201 FES FES . Y 11 LOP E 1 202 201 LOP LOP . Z 18 PSC E 1 203 202 PSC PSC . AA 19 SO4 F 1 201 3 SO4 SO4 . BA 11 LOP G 1 101 514 LOP LOP . CA 19 SO4 G 1 102 1 SO4 SO4 . DA 19 SO4 G 1 103 2 SO4 SO4 . EA 20 HOH A 1 601 301 HOH HOH . EA 20 HOH A 2 602 521 HOH HOH . EA 20 HOH A 3 603 518 HOH HOH . FA 20 HOH B 1 501 522 HOH HOH . GA 20 HOH C 1 601 16 HOH HOH . GA 20 HOH C 2 602 254 HOH HOH . GA 20 HOH C 3 603 523 HOH HOH . GA 20 HOH C 4 604 516 HOH HOH . HA 20 HOH E 1 301 514 HOH HOH . IA 20 HOH F 1 301 519 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 A1IKG . . . R 14 -70.05 -63.966 31.13 1 106.02 ? C2 A1IKG 505 C 1 HETATM 2 C C3 A1IKG . . . R 14 -70.398 -62.115 32.591 1 119.41 ? C3 A1IKG 505 C 1 HETATM 3 C C4 A1IKG . . . R 14 -69.053 -61.7 32.437 1 127.62 ? C4 A1IKG 505 C 1 HETATM 4 C C5 A1IKG . . . R 14 -68.211 -62.436 31.609 1 125.5 ? C5 A1IKG 505 C 1 HETATM 5 C C7 A1IKG . . . R 14 -67.758 -64.33 30.052 1 123.86 ? C7 A1IKG 505 C 1 HETATM 6 C C9 A1IKG . . . R 14 -66.387 -66.258 29.487 1 140.75 ? C9 A1IKG 505 C 1 HETATM 7 C C10 A1IKG . . . R 14 -66 -65.669 28.292 1 154.01 ? C10 A1IKG 505 C 1 HETATM 8 C C11 A1IKG . . . R 14 -64.95 -67.669 27.385 1 171.74 ? C11 A1IKG 505 C 1 HETATM 9 C C12 A1IKG . . . R 14 -63.733 -68.199 27.777 1 166.21 ? C12 A1IKG 505 C 1 HETATM 10 C C16 A1IKG . . . R 14 -65.813 -69.882 27.035 1 196.22 ? C16 A1IKG 505 C 1 HETATM 11 C C1 A1IKG . . . R 14 -70.678 -65.15 30.471 1 98.46 ? C1 A1IKG 505 C 1 HETATM 12 N N1 A1IKG . . . R 14 -70.856 -63.233 31.942 1 109.19 ? N1 A1IKG 505 C 1 HETATM 13 O O1 A1IKG . . . R 14 -67.01 -62.081 31.504 1 119.94 ? O1 A1IKG 505 C 1 HETATM 14 C C6 A1IKG . . . R 14 -68.691 -63.6 30.958 1 114.53 ? C6 A1IKG 505 C 1 HETATM 15 C C8 A1IKG . . . R 14 -67.266 -65.6 30.343 1 129.89 ? C8 A1IKG 505 C 1 HETATM 16 O O2 A1IKG . . . R 14 -65.134 -66.285 27.371 1 165.66 ? O2 A1IKG 505 C 1 HETATM 17 C C13 A1IKG . . . R 14 -63.563 -69.577 27.813 1 178.13 ? C13 A1IKG 505 C 1 HETATM 18 C C14 A1IKG . . . R 14 -64.607 -70.428 27.463 1 186.97 ? C14 A1IKG 505 C 1 HETATM 19 O O3 A1IKG . . . R 14 -64.424 -71.845 27.529 1 175.92 ? O3 A1IKG 505 C 1 HETATM 20 C C15 A1IKG . . . R 14 -65.216 -72.548 28.387 1 183.58 ? C15 A1IKG 505 C 1 HETATM 21 F F1 A1IKG . . . R 14 -65.389 -71.96 29.569 1 175.81 ? F1 A1IKG 505 C 1 HETATM 22 F F2 A1IKG . . . R 14 -66.429 -72.704 27.88 1 180.82 ? F2 A1IKG 505 C 1 HETATM 23 F F3 A1IKG . . . R 14 -64.722 -73.76 28.652 1 169.49 ? F3 A1IKG 505 C 1 HETATM 24 C C17 A1IKG . . . R 14 -65.981 -68.504 26.994 1 193.29 ? C17 A1IKG 505 C 1 HETATM 25 C C18 A1IKG . . . R 14 -66.49 -64.419 27.973 1 155.78 ? C18 A1IKG 505 C 1 HETATM 26 C C19 A1IKG . . . R 14 -67.367 -63.773 28.837 1 133.77 ? C19 A1IKG 505 C 1 HETATM 27 C C20 A1IKG . . . R 14 -68.54 -60.475 33.152 1 122.11 ? C20 A1IKG 505 C 1 HETATM 28 O O4 A1IKG . . . R 14 -69.446 -60.056 34.181 1 128.04 ? O4 A1IKG 505 C 1 HETATM 29 C C21 A1IKG . . . R 14 -70.791 -59.988 33.7 1 134 ? C21 A1IKG 505 C 1 HETATM 30 C C22 A1IKG . . . R 14 -71.365 -61.378 33.473 1 119.41 ? C22 A1IKG 505 C 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 30 #