data_9GE2 # _model_server_result.job_id 3DnJAUeaMAuZfrJaW_6sSg _model_server_result.datetime_utc '2025-04-04 02:44:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9ge2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":401}' # _entry.id 9GE2 # _exptl.entry_id 9GE2 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 470.627 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[4-(2,3-dimethylphenyl)piperazin-1-yl]carbonyl-N,N-dimethyl-4-pyrrolidin-1-yl-benzenesulfonamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9GE2 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9GE2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 6 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 6 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 6 n F NAG 1 X 1 NAG X 300 NAG 6 n F NAG 2 X 2 NAG X 301 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 C SG CYS 158 F CYS 158 1_555 C SG CYS 228 F CYS 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 E SG CYS 375 R CYS 94 1_555 E SG CYS 449 R CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 E ND2 ASN 452 R ASN 171 1_555 F C1 NAG . X NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale2 F O4 NAG . X NAG 1 1_555 F C1 NAG . X NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? # _chem_comp.formula 'C25 H34 N4 O3 S' _chem_comp.formula_weight 470.627 _chem_comp.id A1IKH _chem_comp.mon_nstd_flag . _chem_comp.name 3-[4-(2,3-dimethylphenyl)piperazin-1-yl]carbonyl-N,N-dimethyl-4-pyrrolidin-1-yl-benzenesulfonamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-[[4-(2,3-dimethylphenyl)-1-piperazinyl]carbonyl]-N,N-dimethyl-4-(1-pyrrolidinyl)benzenesulfonamide # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C N A1IKH sing 1 n n C1 N A1IKH sing 2 n n N S A1IKH sing 3 n n C3 C4 A1IKH doub 4 n y C3 C2 A1IKH sing 5 n y S O A1IKH doub 6 n n S C2 A1IKH sing 7 n n S O1 A1IKH doub 8 n n C4 C5 A1IKH sing 9 n y C2 C11 A1IKH doub 10 n y C6 C7 A1IKH sing 11 n n C6 N1 A1IKH sing 12 n n C8 C7 A1IKH sing 13 n n C8 C9 A1IKH sing 14 n n C5 N1 A1IKH sing 15 n n C5 C10 A1IKH doub 16 n y C11 C10 A1IKH sing 17 n y N1 C9 A1IKH sing 18 n n C10 C12 A1IKH sing 19 n n O2 C12 A1IKH doub 20 n n C12 N2 A1IKH sing 21 n n N2 C16 A1IKH sing 22 n n N2 C13 A1IKH sing 23 n n C16 C15 A1IKH sing 24 n n C13 C14 A1IKH sing 25 n n C15 N3 A1IKH sing 26 n n C14 N3 A1IKH sing 27 n n N3 C17 A1IKH sing 28 n n C17 C24 A1IKH doub 29 n y C17 C18 A1IKH sing 30 n y C24 C23 A1IKH sing 31 n y C19 C18 A1IKH sing 32 n n C18 C20 A1IKH doub 33 n y C23 C22 A1IKH doub 34 n y C20 C22 A1IKH sing 35 n y C20 C21 A1IKH sing 36 n n C7 H1 A1IKH sing 37 n n C7 H2 A1IKH sing 38 n n C8 H3 A1IKH sing 39 n n C8 H4 A1IKH sing 40 n n C9 H5 A1IKH sing 41 n n C9 H6 A1IKH sing 42 n n C1 H7 A1IKH sing 43 n n C1 H8 A1IKH sing 44 n n C1 H9 A1IKH sing 45 n n C6 H10 A1IKH sing 46 n n C6 H11 A1IKH sing 47 n n C4 H12 A1IKH sing 48 n n C3 H13 A1IKH sing 49 n n C H14 A1IKH sing 50 n n C H15 A1IKH sing 51 n n C H16 A1IKH sing 52 n n C11 H17 A1IKH sing 53 n n C13 H18 A1IKH sing 54 n n C13 H19 A1IKH sing 55 n n C14 H20 A1IKH sing 56 n n C14 H21 A1IKH sing 57 n n C15 H22 A1IKH sing 58 n n C15 H23 A1IKH sing 59 n n C16 H24 A1IKH sing 60 n n C16 H25 A1IKH sing 61 n n C19 H26 A1IKH sing 62 n n C19 H27 A1IKH sing 63 n n C19 H28 A1IKH sing 64 n n C21 H29 A1IKH sing 65 n n C21 H30 A1IKH sing 66 n n C21 H31 A1IKH sing 67 n n C22 H32 A1IKH sing 68 n n C23 H33 A1IKH sing 69 n n C24 H34 A1IKH sing 70 n n # _atom_sites.entry_id 9GE2 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 7 A1IKH R 1 401 401 A1IKH XXX . H 8 CLR R 1 402 402 CLR CLR . I 9 HOH A 1 301 7 HOH HOH . I 9 HOH A 2 302 15 HOH HOH . I 9 HOH A 3 303 1 HOH HOH . J 9 HOH B 1 401 13 HOH HOH . J 9 HOH B 2 402 10 HOH HOH . J 9 HOH B 3 403 11 HOH HOH . J 9 HOH B 4 404 9 HOH HOH . J 9 HOH B 5 405 12 HOH HOH . J 9 HOH B 6 406 8 HOH HOH . K 9 HOH R 1 501 14 HOH HOH . K 9 HOH R 2 502 2 HOH HOH . K 9 HOH R 3 503 3 HOH HOH . K 9 HOH R 4 504 5 HOH HOH . K 9 HOH R 5 505 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 A1IKH . . . G 7 127.414 144.23 102.73 1 11.8 ? N1 A1IKH 401 R 1 HETATM 2 C C7 A1IKH . . . G 7 129.398 145.397 102.315 1 11.59 ? C7 A1IKH 401 R 1 HETATM 3 C C8 A1IKH . . . G 7 129.694 143.94 102.307 1 7.5 ? C8 A1IKH 401 R 1 HETATM 4 N N2 A1IKH . . . G 7 125.22 145.429 105.168 1 23.9 ? N2 A1IKH 401 R 1 HETATM 5 C C9 A1IKH . . . G 7 128.522 143.326 103.04 1 8.31 ? C9 A1IKH 401 R 1 HETATM 6 O O1 A1IKH . . . G 7 121.034 143.049 102.124 1 24.12 ? O1 A1IKH 401 R 1 HETATM 7 C C1 A1IKH . . . G 7 121.882 143.578 99.318 1 27.61 ? C1 A1IKH 401 R 1 HETATM 8 C C5 A1IKH . . . G 7 126.133 143.715 102.444 1 20.07 ? C5 A1IKH 401 R 1 HETATM 9 C C6 A1IKH . . . G 7 127.902 145.463 102.107 1 14.34 ? C6 A1IKH 401 R 1 HETATM 10 N N3 A1IKH . . . G 7 126.756 145.169 107.537 1 21.94 ? N3 A1IKH 401 R 1 HETATM 11 C C4 A1IKH . . . G 7 125.963 142.584 101.649 1 15.97 ? C4 A1IKH 401 R 1 HETATM 12 C C3 A1IKH . . . G 7 124.697 142.102 101.365 1 10.57 ? C3 A1IKH 401 R 1 HETATM 13 C C2 A1IKH . . . G 7 123.591 142.757 101.879 1 19.78 ? C2 A1IKH 401 R 1 HETATM 14 N N A1IKH . . . G 7 121.772 142.249 99.926 1 23.89 ? N A1IKH 401 R 1 HETATM 15 C C A1IKH . . . G 7 122.303 141.149 99.113 1 21.32 ? C A1IKH 401 R 1 HETATM 16 O O A1IKH . . . G 7 121.942 140.764 101.873 1 23.43 ? O A1IKH 401 R 1 HETATM 17 C C10 A1IKH . . . G 7 125.008 144.373 102.971 1 22.77 ? C10 A1IKH 401 R 1 HETATM 18 C C11 A1IKH . . . G 7 123.737 143.882 102.675 1 27.26 ? C11 A1IKH 401 R 1 HETATM 19 C C12 A1IKH . . . G 7 125.116 145.596 103.836 1 24.94 ? C12 A1IKH 401 R 1 HETATM 20 C C13 A1IKH . . . G 7 125.346 146.559 106.089 1 19.66 ? C13 A1IKH 401 R 1 HETATM 21 C C14 A1IKH . . . G 7 126.65 146.459 106.851 1 24.12 ? C14 A1IKH 401 R 1 HETATM 22 C C15 A1IKH . . . G 7 126.543 144.012 106.661 1 18.07 ? C15 A1IKH 401 R 1 HETATM 23 C C16 A1IKH . . . G 7 125.253 144.145 105.87 1 18.72 ? C16 A1IKH 401 R 1 HETATM 24 C C17 A1IKH . . . G 7 126.302 145.104 108.875 1 20.36 ? C17 A1IKH 401 R 1 HETATM 25 C C18 A1IKH . . . G 7 127.287 144.837 109.829 1 18.11 ? C18 A1IKH 401 R 1 HETATM 26 C C19 A1IKH . . . G 7 128.723 144.599 109.43 1 13.86 ? C19 A1IKH 401 R 1 HETATM 27 C C20 A1IKH . . . G 7 126.916 144.793 111.18 1 14.73 ? C20 A1IKH 401 R 1 HETATM 28 C C21 A1IKH . . . G 7 127.932 144.526 112.259 1 13.9 ? C21 A1IKH 401 R 1 HETATM 29 C C22 A1IKH . . . G 7 125.586 145.009 111.529 1 18.82 ? C22 A1IKH 401 R 1 HETATM 30 C C23 A1IKH . . . G 7 124.625 145.268 110.569 1 22.14 ? C23 A1IKH 401 R 1 HETATM 31 C C24 A1IKH . . . G 7 124.973 145.319 109.23 1 20.71 ? C24 A1IKH 401 R 1 HETATM 32 O O2 A1IKH . . . G 7 125.136 146.696 103.322 1 30.92 ? O2 A1IKH 401 R 1 HETATM 33 S S A1IKH . . . G 7 121.975 142.152 101.535 1 16.05 ? S A1IKH 401 R 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 760 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 33 #