data_9GFE # _model_server_result.job_id d0AWEdpB3SPYlX-ON0I_UA _model_server_result.datetime_utc '2025-06-25 05:47:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9gfe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 9GFE # _exptl.entry_id 9GFE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.439 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-{[(5,5,8,8-tetramethyl-5,6,7,8-tetrahydronaphthalen-2-yl)carbonyl]amino}benzoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.3 _cell.angle_gamma 90 _cell.entry_id 9GFE _cell.length_a 87.66 _cell.length_b 62.34 _cell.length_c 49.47 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9GFE _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C ACE 1 B ACE 1 1_555 B N ALA 2 B ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.366 ? covale ? covale2 B C HIS 3 B HIS 3 1_555 B N NLE 4 B NLE 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale3 B C NLE 4 B NLE 4 1_555 B N ILE 5 B ILE 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale4 B CE NLE 4 B NLE 4 1_555 B NH1 HRG 8 B HRG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale5 B C HIS 7 B HIS 7 1_555 B N HRG 8 B HRG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.36 ? covale ? covale6 B C HRG 8 B HRG 8 1_555 B N LEU 9 B LEU 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? # _chem_comp.formula 'C22 H25 N O3' _chem_comp.formula_weight 351.439 _chem_comp.id EQN _chem_comp.mon_nstd_flag . _chem_comp.name '4-{[(5,5,8,8-tetramethyl-5,6,7,8-tetrahydronaphthalen-2-yl)carbonyl]amino}benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CAY EQN sing 89 n n CAA HAA EQN sing 90 n n CAA HAAA EQN sing 91 n n CAA HAAB EQN sing 92 n n CAB CAY EQN sing 93 n n CAB HAB EQN sing 94 n n CAB HABA EQN sing 95 n n CAB HABB EQN sing 96 n n CAC CAZ EQN sing 97 n n CAC HAC EQN sing 98 n n CAC HACA EQN sing 99 n n CAC HACB EQN sing 100 n n CAD CAZ EQN sing 101 n n CAD HAD EQN sing 102 n n CAD HADA EQN sing 103 n n CAD HADB EQN sing 104 n n OAE CAR EQN doub 105 n n OAF CAS EQN doub 106 n n OAG CAR EQN sing 107 n n CAH CAJ EQN doub 108 n y CAH CAT EQN sing 109 n y CAH HAH EQN sing 110 n n CAI CAK EQN sing 111 n y CAI CAT EQN doub 112 n y CAI HAI EQN sing 113 n n CAJ CAU EQN sing 114 n y CAJ HAJ EQN sing 115 n n CAK CAU EQN doub 116 n y CAK HAK EQN sing 117 n n CAL CAM EQN doub 118 n y CAL CAV EQN sing 119 n y CAL HAL EQN sing 120 n n CAM CAW EQN sing 121 n y CAM HAM EQN sing 122 n n CAN CAV EQN doub 123 n y CAN CAX EQN sing 124 n y CAN HAN EQN sing 125 n n CAO CAP EQN sing 126 n n CAO CAY EQN sing 127 n n CAO HAO EQN sing 128 n n CAO HAOA EQN sing 129 n n CAP CAZ EQN sing 130 n n CAP HAP EQN sing 131 n n CAP HAPA EQN sing 132 n n NAQ CAS EQN sing 133 n n NAQ CAT EQN sing 134 n n NAQ HNAQ EQN sing 135 n n CAR CAU EQN sing 136 n n CAS CAV EQN sing 137 n n CAW CAX EQN doub 138 n y CAW CAZ EQN sing 139 n n CAX CAY EQN sing 140 n n OAG H25 EQN sing 141 n n # _atom_sites.entry_id 9GFE _atom_sites.fract_transf_matrix[1][1] 0.011408 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003121 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016041 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020957 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EQN A 1 501 501 EQN EQN . D 4 HOH A 1 601 52 HOH HOH . D 4 HOH A 2 602 37 HOH HOH . D 4 HOH A 3 603 93 HOH HOH . D 4 HOH A 4 604 77 HOH HOH . D 4 HOH A 5 605 83 HOH HOH . D 4 HOH A 6 606 53 HOH HOH . D 4 HOH A 7 607 211 HOH HOH . D 4 HOH A 8 608 201 HOH HOH . D 4 HOH A 9 609 74 HOH HOH . D 4 HOH A 10 610 137 HOH HOH . D 4 HOH A 11 611 8 HOH HOH . D 4 HOH A 12 612 122 HOH HOH . D 4 HOH A 13 613 142 HOH HOH . D 4 HOH A 14 614 5 HOH HOH . D 4 HOH A 15 615 33 HOH HOH . D 4 HOH A 16 616 221 HOH HOH . D 4 HOH A 17 617 29 HOH HOH . D 4 HOH A 18 618 213 HOH HOH . D 4 HOH A 19 619 123 HOH HOH . D 4 HOH A 20 620 17 HOH HOH . D 4 HOH A 21 621 91 HOH HOH . D 4 HOH A 22 622 11 HOH HOH . D 4 HOH A 23 623 4 HOH HOH . D 4 HOH A 24 624 67 HOH HOH . D 4 HOH A 25 625 78 HOH HOH . D 4 HOH A 26 626 138 HOH HOH . D 4 HOH A 27 627 170 HOH HOH . D 4 HOH A 28 628 145 HOH HOH . D 4 HOH A 29 629 163 HOH HOH . D 4 HOH A 30 630 15 HOH HOH . D 4 HOH A 31 631 34 HOH HOH . D 4 HOH A 32 632 16 HOH HOH . D 4 HOH A 33 633 103 HOH HOH . D 4 HOH A 34 634 10 HOH HOH . D 4 HOH A 35 635 32 HOH HOH . D 4 HOH A 36 636 88 HOH HOH . D 4 HOH A 37 637 63 HOH HOH . D 4 HOH A 38 638 198 HOH HOH . D 4 HOH A 39 639 230 HOH HOH . D 4 HOH A 40 640 72 HOH HOH . D 4 HOH A 41 641 89 HOH HOH . D 4 HOH A 42 642 215 HOH HOH . D 4 HOH A 43 643 22 HOH HOH . D 4 HOH A 44 644 64 HOH HOH . D 4 HOH A 45 645 24 HOH HOH . D 4 HOH A 46 646 20 HOH HOH . D 4 HOH A 47 647 1 HOH HOH . D 4 HOH A 48 648 51 HOH HOH . D 4 HOH A 49 649 41 HOH HOH . D 4 HOH A 50 650 82 HOH HOH . D 4 HOH A 51 651 224 HOH HOH . D 4 HOH A 52 652 119 HOH HOH . D 4 HOH A 53 653 28 HOH HOH . D 4 HOH A 54 654 2 HOH HOH . D 4 HOH A 55 655 73 HOH HOH . D 4 HOH A 56 656 30 HOH HOH . D 4 HOH A 57 657 12 HOH HOH . D 4 HOH A 58 658 214 HOH HOH . D 4 HOH A 59 659 146 HOH HOH . D 4 HOH A 60 660 68 HOH HOH . D 4 HOH A 61 661 115 HOH HOH . D 4 HOH A 62 662 204 HOH HOH . D 4 HOH A 63 663 229 HOH HOH . D 4 HOH A 64 664 43 HOH HOH . D 4 HOH A 65 665 47 HOH HOH . D 4 HOH A 66 666 216 HOH HOH . D 4 HOH A 67 667 56 HOH HOH . D 4 HOH A 68 668 25 HOH HOH . D 4 HOH A 69 669 206 HOH HOH . D 4 HOH A 70 670 202 HOH HOH . D 4 HOH A 71 671 3 HOH HOH . D 4 HOH A 72 672 59 HOH HOH . D 4 HOH A 73 673 127 HOH HOH . D 4 HOH A 74 674 54 HOH HOH . D 4 HOH A 75 675 118 HOH HOH . D 4 HOH A 76 676 156 HOH HOH . D 4 HOH A 77 677 21 HOH HOH . D 4 HOH A 78 678 66 HOH HOH . D 4 HOH A 79 679 321 HOH HOH . D 4 HOH A 80 680 133 HOH HOH . D 4 HOH A 81 681 55 HOH HOH . D 4 HOH A 82 682 166 HOH HOH . D 4 HOH A 83 683 222 HOH HOH . D 4 HOH A 84 684 35 HOH HOH . D 4 HOH A 85 685 120 HOH HOH . D 4 HOH A 86 686 110 HOH HOH . D 4 HOH A 87 687 7 HOH HOH . D 4 HOH A 88 688 27 HOH HOH . D 4 HOH A 89 689 217 HOH HOH . D 4 HOH A 90 690 6 HOH HOH . D 4 HOH A 91 691 60 HOH HOH . D 4 HOH A 92 692 189 HOH HOH . D 4 HOH A 93 693 107 HOH HOH . D 4 HOH A 94 694 179 HOH HOH . D 4 HOH A 95 695 209 HOH HOH . D 4 HOH A 96 696 39 HOH HOH . D 4 HOH A 97 697 155 HOH HOH . D 4 HOH A 98 698 26 HOH HOH . D 4 HOH A 99 699 136 HOH HOH . D 4 HOH A 100 700 81 HOH HOH . D 4 HOH A 101 701 40 HOH HOH . D 4 HOH A 102 702 218 HOH HOH . D 4 HOH A 103 703 61 HOH HOH . D 4 HOH A 104 704 79 HOH HOH . D 4 HOH A 105 705 100 HOH HOH . D 4 HOH A 106 706 70 HOH HOH . D 4 HOH A 107 707 109 HOH HOH . D 4 HOH A 108 708 208 HOH HOH . D 4 HOH A 109 709 85 HOH HOH . D 4 HOH A 110 710 18 HOH HOH . D 4 HOH A 111 711 9 HOH HOH . D 4 HOH A 112 712 14 HOH HOH . D 4 HOH A 113 713 168 HOH HOH . D 4 HOH A 114 714 169 HOH HOH . D 4 HOH A 115 715 71 HOH HOH . D 4 HOH A 116 716 128 HOH HOH . D 4 HOH A 117 717 225 HOH HOH . D 4 HOH A 118 718 112 HOH HOH . D 4 HOH A 119 719 13 HOH HOH . D 4 HOH A 120 720 219 HOH HOH . D 4 HOH A 121 721 111 HOH HOH . D 4 HOH A 122 722 161 HOH HOH . D 4 HOH A 123 723 23 HOH HOH . D 4 HOH A 124 724 19 HOH HOH . D 4 HOH A 125 725 125 HOH HOH . D 4 HOH A 126 726 182 HOH HOH . D 4 HOH A 127 727 207 HOH HOH . D 4 HOH A 128 728 49 HOH HOH . D 4 HOH A 129 729 116 HOH HOH . D 4 HOH A 130 730 226 HOH HOH . D 4 HOH A 131 731 205 HOH HOH . D 4 HOH A 132 732 95 HOH HOH . D 4 HOH A 133 733 139 HOH HOH . D 4 HOH A 134 734 228 HOH HOH . D 4 HOH A 135 735 46 HOH HOH . D 4 HOH A 136 736 38 HOH HOH . D 4 HOH A 137 737 80 HOH HOH . D 4 HOH A 138 738 143 HOH HOH . D 4 HOH A 139 739 132 HOH HOH . D 4 HOH A 140 740 190 HOH HOH . D 4 HOH A 141 741 188 HOH HOH . D 4 HOH A 142 742 36 HOH HOH . D 4 HOH A 143 743 106 HOH HOH . D 4 HOH A 144 744 181 HOH HOH . D 4 HOH A 145 745 212 HOH HOH . D 4 HOH A 146 746 160 HOH HOH . D 4 HOH A 147 747 129 HOH HOH . D 4 HOH A 148 748 62 HOH HOH . D 4 HOH A 149 749 117 HOH HOH . D 4 HOH A 150 750 45 HOH HOH . D 4 HOH A 151 751 227 HOH HOH . D 4 HOH A 152 752 223 HOH HOH . D 4 HOH A 153 753 220 HOH HOH . D 4 HOH A 154 754 203 HOH HOH . D 4 HOH A 155 755 149 HOH HOH . D 4 HOH A 156 756 158 HOH HOH . D 4 HOH A 157 757 153 HOH HOH . D 4 HOH A 158 758 210 HOH HOH . E 4 HOH B 1 101 113 HOH HOH . E 4 HOH B 2 102 200 HOH HOH . E 4 HOH B 3 103 99 HOH HOH . E 4 HOH B 4 104 199 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA EQN . . . C 3 -12.007 -10.262 -13.543 1 21.06 ? CAA EQN 501 A 1 HETATM 2 C CAB EQN . . . C 3 -10.448 -12.186 -13.584 1 20.24 ? CAB EQN 501 A 1 HETATM 3 C CAC EQN . . . C 3 -10.914 -10.488 -18.402 1 21.82 ? CAC EQN 501 A 1 HETATM 4 C CAD EQN . . . C 3 -8.961 -11.925 -18.061 1 21.35 ? CAD EQN 501 A 1 HETATM 5 O OAE EQN . . . C 3 -4.238 -6.262 -7.124 1 20.32 ? OAE EQN 501 A 1 HETATM 6 O OAF EQN . . . C 3 -6.876 -6.678 -14.141 1 18.72 ? OAF EQN 501 A 1 HETATM 7 O OAG EQN . . . C 3 -4.134 -4.342 -8.253 1 20.32 ? OAG EQN 501 A 1 HETATM 8 C CAH EQN . . . C 3 -6.558 -7.949 -10.157 1 16.77 ? CAH EQN 501 A 1 HETATM 9 C CAI EQN . . . C 3 -6.294 -6.01 -11.433 1 16.06 ? CAI EQN 501 A 1 HETATM 10 C CAJ EQN . . . C 3 -5.901 -7.376 -9.084 1 17.7 ? CAJ EQN 501 A 1 HETATM 11 C CAK EQN . . . C 3 -5.578 -5.416 -10.398 1 16.58 ? CAK EQN 501 A 1 HETATM 12 C CAL EQN . . . C 3 -8.036 -8.377 -15.902 1 18.87 ? CAL EQN 501 A 1 HETATM 13 C CAM EQN . . . C 3 -8.681 -9.251 -16.811 1 18.16 ? CAM EQN 501 A 1 HETATM 14 C CAN EQN . . . C 3 -9.27 -9.355 -14.128 1 17.76 ? CAN EQN 501 A 1 HETATM 15 C CAO EQN . . . C 3 -11.872 -11.708 -15.542 1 21.58 ? CAO EQN 501 A 1 HETATM 16 C CAP EQN . . . C 3 -10.947 -12.255 -16.628 1 21.47 ? CAP EQN 501 A 1 HETATM 17 N NAQ EQN . . . C 3 -7.532 -7.98 -12.331 1 17.06 ? NAQ EQN 501 A 1 HETATM 18 C CAR EQN . . . C 3 -4.535 -5.524 -8.095 1 19.37 ? CAR EQN 501 A 1 HETATM 19 C CAS EQN . . . C 3 -7.535 -7.595 -13.646 1 17.1 ? CAS EQN 501 A 1 HETATM 20 C CAT EQN . . . C 3 -6.792 -7.278 -11.353 1 16.45 ? CAT EQN 501 A 1 HETATM 21 C CAU EQN . . . C 3 -5.352 -6.118 -9.21 1 17.24 ? CAU EQN 501 A 1 HETATM 22 C CAV EQN . . . C 3 -8.337 -8.451 -14.558 1 17.59 ? CAV EQN 501 A 1 HETATM 23 C CAW EQN . . . C 3 -9.59 -10.175 -16.357 1 18.97 ? CAW EQN 501 A 1 HETATM 24 C CAX EQN . . . C 3 -9.922 -10.208 -15.011 1 18.82 ? CAX EQN 501 A 1 HETATM 25 C CAY EQN . . . C 3 -11.04 -11.078 -14.451 1 20.49 ? CAY EQN 501 A 1 HETATM 26 C CAZ EQN . . . C 3 -10.123 -11.213 -17.332 1 20.37 ? CAZ EQN 501 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 33 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #