data_9GFZ # _model_server_result.job_id -BLPK0Lp1oyJEjdqW-nUKA _model_server_result.datetime_utc '2025-03-01 00:26:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9gfz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 9GFZ # _exptl.entry_id 9GFZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 99.905 _cell.angle_beta 105.75 _cell.angle_gamma 119.799 _cell.entry_id 9GFZ _cell.length_a 52.98 _cell.length_b 59.84 _cell.length_c 61.24 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9GFZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall 'P 1' _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 9GFZ _atom_sites.fract_transf_matrix[1][1] 0.018875 _atom_sites.fract_transf_matrix[1][2] 0.010809 _atom_sites.fract_transf_matrix[1][3] 0.009995 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019258 _atom_sites.fract_transf_matrix[2][3] 0.007609 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018243 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ANP A 1 601 601 ANP ANP . D 3 HOH A 1 701 4 HOH HOH . D 3 HOH A 2 702 37 HOH HOH . D 3 HOH A 3 703 35 HOH HOH . D 3 HOH A 4 704 15 HOH HOH . D 3 HOH A 5 705 3 HOH HOH . D 3 HOH A 6 706 16 HOH HOH . D 3 HOH A 7 707 9 HOH HOH . D 3 HOH A 8 708 31 HOH HOH . D 3 HOH A 9 709 42 HOH HOH . D 3 HOH A 10 710 2 HOH HOH . D 3 HOH A 11 711 10 HOH HOH . D 3 HOH A 12 712 11 HOH HOH . D 3 HOH A 13 713 34 HOH HOH . D 3 HOH A 14 714 18 HOH HOH . D 3 HOH A 15 715 28 HOH HOH . D 3 HOH A 16 716 44 HOH HOH . D 3 HOH A 17 717 33 HOH HOH . D 3 HOH A 18 718 50 HOH HOH . D 3 HOH A 19 719 26 HOH HOH . D 3 HOH A 20 720 56 HOH HOH . D 3 HOH A 21 721 48 HOH HOH . D 3 HOH A 22 722 55 HOH HOH . D 3 HOH A 23 723 36 HOH HOH . D 3 HOH A 24 724 43 HOH HOH . D 3 HOH A 25 725 45 HOH HOH . E 3 HOH B 1 601 49 HOH HOH . E 3 HOH B 2 602 54 HOH HOH . E 3 HOH B 3 603 47 HOH HOH . E 3 HOH B 4 604 1 HOH HOH . E 3 HOH B 5 605 6 HOH HOH . E 3 HOH B 6 606 32 HOH HOH . E 3 HOH B 7 607 13 HOH HOH . E 3 HOH B 8 608 27 HOH HOH . E 3 HOH B 9 609 8 HOH HOH . E 3 HOH B 10 610 30 HOH HOH . E 3 HOH B 11 611 24 HOH HOH . E 3 HOH B 12 612 7 HOH HOH . E 3 HOH B 13 613 52 HOH HOH . E 3 HOH B 14 614 40 HOH HOH . E 3 HOH B 15 615 58 HOH HOH . E 3 HOH B 16 616 29 HOH HOH . E 3 HOH B 17 617 39 HOH HOH . E 3 HOH B 18 618 57 HOH HOH . E 3 HOH B 19 619 51 HOH HOH . E 3 HOH B 20 620 53 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . C 2 12.746 -11.045 -29.31 1 152.14 ? PG ANP 601 A 1 HETATM 2 O O1G ANP . . . C 2 12.862 -11.481 -27.849 1 122.62 ? O1G ANP 601 A 1 HETATM 3 O O2G ANP . . . C 2 12.094 -12.089 -30.219 1 152.74 ? O2G ANP 601 A 1 HETATM 4 O O3G ANP . . . C 2 14.021 -10.424 -29.884 1 144.62 ? O3G ANP 601 A 1 HETATM 5 P PB ANP . . . C 2 10.013 -9.605 -28.979 1 152.46 ? PB ANP 601 A 1 HETATM 6 O O1B ANP . . . C 2 9.242 -9.048 -30.14 1 141.07 ? O1B ANP 601 A 1 HETATM 7 O O2B ANP . . . C 2 9.68 -9.173 -27.573 1 111.72 ? O2B ANP 601 A 1 HETATM 8 N N3B ANP . . . C 2 11.654 -9.619 -29.287 1 135.02 ? N3B ANP 601 A 1 HETATM 9 P PA ANP . . . C 2 8.311 -11.953 -28.489 1 145.44 ? PA ANP 601 A 1 HETATM 10 O O1A ANP . . . C 2 8.035 -11.595 -27.065 1 128.69 ? O1A ANP 601 A 1 HETATM 11 O O2A ANP . . . C 2 8.279 -13.407 -28.92 1 121.67 ? O2A ANP 601 A 1 HETATM 12 O O3A ANP . . . C 2 9.661 -11.267 -29.04 1 144.65 ? O3A ANP 601 A 1 HETATM 13 O O5' ANP . . . C 2 7.233 -11.077 -29.393 1 139.18 ? O5' ANP 601 A 1 HETATM 14 C C5' ANP . . . C 2 5.959 -11.575 -29.736 1 129.82 ? C5' ANP 601 A 1 HETATM 15 C C4' ANP . . . C 2 4.862 -10.938 -28.905 1 132.18 ? C4' ANP 601 A 1 HETATM 16 O O4' ANP . . . C 2 4.11 -11.942 -28.224 1 132.61 ? O4' ANP 601 A 1 HETATM 17 C C3' ANP . . . C 2 5.357 -9.977 -27.816 1 139.67 ? C3' ANP 601 A 1 HETATM 18 O O3' ANP . . . C 2 5.526 -8.671 -28.254 1 139.05 ? O3' ANP 601 A 1 HETATM 19 C C2' ANP . . . C 2 4.379 -10.154 -26.659 1 133.88 ? C2' ANP 601 A 1 HETATM 20 O O2' ANP . . . C 2 3.381 -9.176 -26.747 1 124.86 ? O2' ANP 601 A 1 HETATM 21 C C1' ANP . . . C 2 3.806 -11.566 -26.918 1 132.26 ? C1' ANP 601 A 1 HETATM 22 N N9 ANP . . . C 2 4.333 -12.586 -26.015 1 120.47 ? N9 ANP 601 A 1 HETATM 23 C C8 ANP . . . C 2 5.549 -13.215 -26.043 1 116.25 ? C8 ANP 601 A 1 HETATM 24 N N7 ANP . . . C 2 5.7 -14.088 -25.088 1 116.26 ? N7 ANP 601 A 1 HETATM 25 C C5 ANP . . . C 2 4.519 -14.04 -24.392 1 117.7 ? C5 ANP 601 A 1 HETATM 26 C C6 ANP . . . C 2 4.038 -14.725 -23.262 1 102.46 ? C6 ANP 601 A 1 HETATM 27 N N6 ANP . . . C 2 4.759 -15.648 -22.612 1 85.2 ? N6 ANP 601 A 1 HETATM 28 N N1 ANP . . . C 2 2.808 -14.434 -22.827 1 105.79 ? N1 ANP 601 A 1 HETATM 29 C C2 ANP . . . C 2 2.089 -13.517 -23.471 1 112.13 ? C2 ANP 601 A 1 HETATM 30 N N3 ANP . . . C 2 2.428 -12.812 -24.535 1 119.32 ? N3 ANP 601 A 1 HETATM 31 C C4 ANP . . . C 2 3.657 -13.112 -24.956 1 119.14 ? C4 ANP 601 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 31 #