data_9GH3 # _model_server_result.job_id tGEOUOCrCWgOucYpITki1g _model_server_result.datetime_utc '2024-11-16 06:28:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9gh3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1501}' # _entry.id 9GH3 # _exptl.entry_id 9GH3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.56 _cell.angle_gamma 90 _cell.entry_id 9GH3 _cell.length_a 83.77 _cell.length_b 26.98 _cell.length_c 55.83 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9GH3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 9GH3 _atom_sites.fract_transf_matrix[1][1] 0.011937 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002225 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.037064 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01822 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 1501 1 EDO EDO . C 3 HOH A 1 1601 132 HOH HOH . C 3 HOH A 2 1602 97 HOH HOH . C 3 HOH A 3 1603 108 HOH HOH . C 3 HOH A 4 1604 211 HOH HOH . C 3 HOH A 5 1605 195 HOH HOH . C 3 HOH A 6 1606 160 HOH HOH . C 3 HOH A 7 1607 18 HOH HOH . C 3 HOH A 8 1608 75 HOH HOH . C 3 HOH A 9 1609 199 HOH HOH . C 3 HOH A 10 1610 183 HOH HOH . C 3 HOH A 11 1611 185 HOH HOH . C 3 HOH A 12 1612 121 HOH HOH . C 3 HOH A 13 1613 8 HOH HOH . C 3 HOH A 14 1614 20 HOH HOH . C 3 HOH A 15 1615 193 HOH HOH . C 3 HOH A 16 1616 114 HOH HOH . C 3 HOH A 17 1617 117 HOH HOH . C 3 HOH A 18 1618 46 HOH HOH . C 3 HOH A 19 1619 47 HOH HOH . C 3 HOH A 20 1620 71 HOH HOH . C 3 HOH A 21 1621 19 HOH HOH . C 3 HOH A 22 1622 175 HOH HOH . C 3 HOH A 23 1623 32 HOH HOH . C 3 HOH A 24 1624 74 HOH HOH . C 3 HOH A 25 1625 157 HOH HOH . C 3 HOH A 26 1626 83 HOH HOH . C 3 HOH A 27 1627 26 HOH HOH . C 3 HOH A 28 1628 13 HOH HOH . C 3 HOH A 29 1629 64 HOH HOH . C 3 HOH A 30 1630 218 HOH HOH . C 3 HOH A 31 1631 2 HOH HOH . C 3 HOH A 32 1632 140 HOH HOH . C 3 HOH A 33 1633 87 HOH HOH . C 3 HOH A 34 1634 110 HOH HOH . C 3 HOH A 35 1635 124 HOH HOH . C 3 HOH A 36 1636 85 HOH HOH . C 3 HOH A 37 1637 154 HOH HOH . C 3 HOH A 38 1638 215 HOH HOH . C 3 HOH A 39 1639 16 HOH HOH . C 3 HOH A 40 1640 219 HOH HOH . C 3 HOH A 41 1641 101 HOH HOH . C 3 HOH A 42 1642 9 HOH HOH . C 3 HOH A 43 1643 39 HOH HOH . C 3 HOH A 44 1644 5 HOH HOH . C 3 HOH A 45 1645 82 HOH HOH . C 3 HOH A 46 1646 43 HOH HOH . C 3 HOH A 47 1647 86 HOH HOH . C 3 HOH A 48 1648 107 HOH HOH . C 3 HOH A 49 1649 120 HOH HOH . C 3 HOH A 50 1650 38 HOH HOH . C 3 HOH A 51 1651 161 HOH HOH . C 3 HOH A 52 1652 36 HOH HOH . C 3 HOH A 53 1653 42 HOH HOH . C 3 HOH A 54 1654 176 HOH HOH . C 3 HOH A 55 1655 134 HOH HOH . C 3 HOH A 56 1656 53 HOH HOH . C 3 HOH A 57 1657 59 HOH HOH . C 3 HOH A 58 1658 51 HOH HOH . C 3 HOH A 59 1659 4 HOH HOH . C 3 HOH A 60 1660 31 HOH HOH . C 3 HOH A 61 1661 10 HOH HOH . C 3 HOH A 62 1662 137 HOH HOH . C 3 HOH A 63 1663 164 HOH HOH . C 3 HOH A 64 1664 171 HOH HOH . C 3 HOH A 65 1665 191 HOH HOH . C 3 HOH A 66 1666 67 HOH HOH . C 3 HOH A 67 1667 106 HOH HOH . C 3 HOH A 68 1668 21 HOH HOH . C 3 HOH A 69 1669 105 HOH HOH . C 3 HOH A 70 1670 130 HOH HOH . C 3 HOH A 71 1671 150 HOH HOH . C 3 HOH A 72 1672 189 HOH HOH . C 3 HOH A 73 1673 6 HOH HOH . C 3 HOH A 74 1674 99 HOH HOH . C 3 HOH A 75 1675 14 HOH HOH . C 3 HOH A 76 1676 122 HOH HOH . C 3 HOH A 77 1677 72 HOH HOH . C 3 HOH A 78 1678 40 HOH HOH . C 3 HOH A 79 1679 149 HOH HOH . C 3 HOH A 80 1680 29 HOH HOH . C 3 HOH A 81 1681 155 HOH HOH . C 3 HOH A 82 1682 84 HOH HOH . C 3 HOH A 83 1683 3 HOH HOH . C 3 HOH A 84 1684 12 HOH HOH . C 3 HOH A 85 1685 197 HOH HOH . C 3 HOH A 86 1686 116 HOH HOH . C 3 HOH A 87 1687 35 HOH HOH . C 3 HOH A 88 1688 61 HOH HOH . C 3 HOH A 89 1689 188 HOH HOH . C 3 HOH A 90 1690 141 HOH HOH . C 3 HOH A 91 1691 144 HOH HOH . C 3 HOH A 92 1692 30 HOH HOH . C 3 HOH A 93 1693 96 HOH HOH . C 3 HOH A 94 1694 70 HOH HOH . C 3 HOH A 95 1695 62 HOH HOH . C 3 HOH A 96 1696 54 HOH HOH . C 3 HOH A 97 1697 52 HOH HOH . C 3 HOH A 98 1698 103 HOH HOH . C 3 HOH A 99 1699 94 HOH HOH . C 3 HOH A 100 1700 98 HOH HOH . C 3 HOH A 101 1701 28 HOH HOH . C 3 HOH A 102 1702 1 HOH HOH . C 3 HOH A 103 1703 50 HOH HOH . C 3 HOH A 104 1704 143 HOH HOH . C 3 HOH A 105 1705 91 HOH HOH . C 3 HOH A 106 1706 166 HOH HOH . C 3 HOH A 107 1707 23 HOH HOH . C 3 HOH A 108 1708 25 HOH HOH . C 3 HOH A 109 1709 7 HOH HOH . C 3 HOH A 110 1710 15 HOH HOH . C 3 HOH A 111 1711 37 HOH HOH . C 3 HOH A 112 1712 210 HOH HOH . C 3 HOH A 113 1713 17 HOH HOH . C 3 HOH A 114 1714 22 HOH HOH . C 3 HOH A 115 1715 48 HOH HOH . C 3 HOH A 116 1716 139 HOH HOH . C 3 HOH A 117 1717 187 HOH HOH . C 3 HOH A 118 1718 165 HOH HOH . C 3 HOH A 119 1719 90 HOH HOH . C 3 HOH A 120 1720 33 HOH HOH . C 3 HOH A 121 1721 196 HOH HOH . C 3 HOH A 122 1722 44 HOH HOH . C 3 HOH A 123 1723 95 HOH HOH . C 3 HOH A 124 1724 92 HOH HOH . C 3 HOH A 125 1725 133 HOH HOH . C 3 HOH A 126 1726 60 HOH HOH . C 3 HOH A 127 1727 159 HOH HOH . C 3 HOH A 128 1728 68 HOH HOH . C 3 HOH A 129 1729 216 HOH HOH . C 3 HOH A 130 1730 136 HOH HOH . C 3 HOH A 131 1731 158 HOH HOH . C 3 HOH A 132 1732 173 HOH HOH . C 3 HOH A 133 1733 202 HOH HOH . C 3 HOH A 134 1734 125 HOH HOH . C 3 HOH A 135 1735 24 HOH HOH . C 3 HOH A 136 1736 167 HOH HOH . C 3 HOH A 137 1737 135 HOH HOH . C 3 HOH A 138 1738 34 HOH HOH . C 3 HOH A 139 1739 138 HOH HOH . C 3 HOH A 140 1740 123 HOH HOH . C 3 HOH A 141 1741 186 HOH HOH . C 3 HOH A 142 1742 192 HOH HOH . C 3 HOH A 143 1743 163 HOH HOH . C 3 HOH A 144 1744 131 HOH HOH . C 3 HOH A 145 1745 73 HOH HOH . C 3 HOH A 146 1746 127 HOH HOH . C 3 HOH A 147 1747 145 HOH HOH . C 3 HOH A 148 1748 45 HOH HOH . C 3 HOH A 149 1749 109 HOH HOH . C 3 HOH A 150 1750 179 HOH HOH . C 3 HOH A 151 1751 104 HOH HOH . C 3 HOH A 152 1752 80 HOH HOH . C 3 HOH A 153 1753 27 HOH HOH . C 3 HOH A 154 1754 198 HOH HOH . C 3 HOH A 155 1755 93 HOH HOH . C 3 HOH A 156 1756 119 HOH HOH . C 3 HOH A 157 1757 55 HOH HOH . C 3 HOH A 158 1758 128 HOH HOH . C 3 HOH A 159 1759 142 HOH HOH . C 3 HOH A 160 1760 208 HOH HOH . C 3 HOH A 161 1761 170 HOH HOH . C 3 HOH A 162 1762 181 HOH HOH . C 3 HOH A 163 1763 49 HOH HOH . C 3 HOH A 164 1764 194 HOH HOH . C 3 HOH A 165 1765 65 HOH HOH . C 3 HOH A 166 1766 214 HOH HOH . C 3 HOH A 167 1767 212 HOH HOH . C 3 HOH A 168 1768 182 HOH HOH . C 3 HOH A 169 1769 209 HOH HOH . C 3 HOH A 170 1770 57 HOH HOH . C 3 HOH A 171 1771 204 HOH HOH . C 3 HOH A 172 1772 79 HOH HOH . C 3 HOH A 173 1773 200 HOH HOH . C 3 HOH A 174 1774 148 HOH HOH . C 3 HOH A 175 1775 220 HOH HOH . C 3 HOH A 176 1776 177 HOH HOH . C 3 HOH A 177 1777 58 HOH HOH . C 3 HOH A 178 1778 174 HOH HOH . C 3 HOH A 179 1779 168 HOH HOH . C 3 HOH A 180 1780 111 HOH HOH . C 3 HOH A 181 1781 102 HOH HOH . C 3 HOH A 182 1782 118 HOH HOH . C 3 HOH A 183 1783 126 HOH HOH . C 3 HOH A 184 1784 69 HOH HOH . C 3 HOH A 185 1785 56 HOH HOH . C 3 HOH A 186 1786 78 HOH HOH . C 3 HOH A 187 1787 66 HOH HOH . C 3 HOH A 188 1788 190 HOH HOH . C 3 HOH A 189 1789 129 HOH HOH . C 3 HOH A 190 1790 151 HOH HOH . C 3 HOH A 191 1791 217 HOH HOH . C 3 HOH A 192 1792 146 HOH HOH . C 3 HOH A 193 1793 162 HOH HOH . C 3 HOH A 194 1794 112 HOH HOH . C 3 HOH A 195 1795 113 HOH HOH . C 3 HOH A 196 1796 169 HOH HOH . C 3 HOH A 197 1797 77 HOH HOH . C 3 HOH A 198 1798 184 HOH HOH . C 3 HOH A 199 1799 89 HOH HOH . C 3 HOH A 200 1800 172 HOH HOH . C 3 HOH A 201 1801 63 HOH HOH . C 3 HOH A 202 1802 152 HOH HOH . C 3 HOH A 203 1803 205 HOH HOH . C 3 HOH A 204 1804 206 HOH HOH . C 3 HOH A 205 1805 100 HOH HOH . C 3 HOH A 206 1806 115 HOH HOH . C 3 HOH A 207 1807 153 HOH HOH . C 3 HOH A 208 1808 213 HOH HOH . C 3 HOH A 209 1809 207 HOH HOH . C 3 HOH A 210 1810 76 HOH HOH . C 3 HOH A 211 1812 180 HOH HOH . C 3 HOH A 212 1813 41 HOH HOH . C 3 HOH A 213 1814 203 HOH HOH . C 3 HOH A 214 1815 147 HOH HOH . C 3 HOH A 215 1816 81 HOH HOH . C 3 HOH A 216 1817 156 HOH HOH . C 3 HOH A 217 1818 178 HOH HOH . C 3 HOH A 218 1819 88 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . B 2 -20.37 12.457 27.444 1 27.34 ? C1 EDO 1501 A 1 HETATM 2 O O1 EDO . . . B 2 -21.683 11.912 27.236 1 30.43 ? O1 EDO 1501 A 1 HETATM 3 C C2 EDO . . . B 2 -19.424 12.115 26.314 1 33.87 ? C2 EDO 1501 A 1 HETATM 4 O O2 EDO . . . B 2 -19.928 11.056 25.488 1 34.81 ? O2 EDO 1501 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #