data_9GHX # _model_server_result.job_id Kmb3wdeJHdwsZRLt5ilyZA _model_server_result.datetime_utc '2024-12-16 12:39:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9ghx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 9GHX # _exptl.entry_id 9GHX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 404.376 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Tricarbonyl di(imidazole) rhenium(I)' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9GHX _cell.length_a 81.493 _cell.length_b 81.493 _cell.length_c 37.413 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9GHX _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall 'P 4nw 2abw' _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc1 A NE2 HIS 15 A HIS 15 1_555 G RE REI . A REI 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? metalc ? metalc2 A O SER 60 A SER 60 1_555 I NA NA . A NA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc3 A O CYS 64 A CYS 64 1_555 I NA NA . A NA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc4 A OG SER 72 A SER 72 1_555 I NA NA . A NA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc5 A O ARG 73 A ARG 73 1_555 I NA NA . A NA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc6 A OD2 ASP 101 A ASP 101 1_555 F RE VHL . A VHL 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc7 A OXT LEU 129 A LEU 129 1_555 K RE RE . A RE 210 7_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc8 I NA NA . A NA 208 1_555 M O HOH . A HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? metalc ? metalc9 I NA NA . A NA 208 1_555 M O HOH . A HOH 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? # _chem_comp.formula 'C9 H6 N4 O3 Re 1' _chem_comp.formula_weight 404.376 _chem_comp.id VHL _chem_comp.mon_nstd_flag . _chem_comp.name 'Tricarbonyl di(imidazole) rhenium(I)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms di(imidazol-1-yl)-tris(oxidaniumylidynemethyl)rhenium(1+) # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag RE N1 VHL sing 405 n n RE N3 VHL sing 406 n n C1 O1 VHL trip 407 n n C2 O2 VHL trip 408 n n C3 O3 VHL trip 409 n n N1 C4 VHL sing 410 n y N1 C6 VHL sing 411 n y C4 N2 VHL doub 412 n y N2 C5 VHL sing 413 n y C5 C6 VHL doub 414 n y N3 C7 VHL sing 415 n y N3 C9 VHL sing 416 n y C7 N4 VHL doub 417 n y N4 C8 VHL sing 418 n y C8 C9 VHL doub 419 n y C6 H61 VHL sing 420 n n C5 H51 VHL sing 421 n n C4 H41 VHL sing 422 n n C7 H71 VHL sing 423 n n C9 H91 VHL sing 424 n n C8 H81 VHL sing 425 n n RE C1 VHL sing 426 n n RE C2 VHL sing 427 n n RE C3 VHL sing 428 n n # _atom_sites.entry_id 9GHX _atom_sites.fract_transf_matrix[1][1] 0.012271 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012271 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026729 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 201 1130 CL CL . C 2 CL A 1 202 1131 CL CL . D 2 CL A 1 203 1132 CL CL . E 3 VHL A 1 204 1133 VHL RII . F 3 VHL A 1 205 1134 VHL RII . G 4 REI A 1 206 1135 REI RI3 . H 5 IMD A 1 207 1136 IMD IMD . I 6 NA A 1 208 1 NA NA . J 7 RE A 1 209 4 RE RE . K 7 RE A 1 210 5 RE RE . L 2 CL A 1 211 1 CL CL . M 8 HOH A 1 301 14 HOH HOH . M 8 HOH A 2 302 9 HOH HOH . M 8 HOH A 3 303 20 HOH HOH . M 8 HOH A 4 304 24 HOH HOH . M 8 HOH A 5 305 34 HOH HOH . M 8 HOH A 6 306 10 HOH HOH . M 8 HOH A 7 307 39 HOH HOH . M 8 HOH A 8 308 5 HOH HOH . M 8 HOH A 9 309 3 HOH HOH . M 8 HOH A 10 310 35 HOH HOH . M 8 HOH A 11 311 8 HOH HOH . M 8 HOH A 12 312 17 HOH HOH . M 8 HOH A 13 313 18 HOH HOH . M 8 HOH A 14 314 11 HOH HOH . M 8 HOH A 15 315 2 HOH HOH . M 8 HOH A 16 316 1 HOH HOH . M 8 HOH A 17 317 36 HOH HOH . M 8 HOH A 18 318 7 HOH HOH . M 8 HOH A 19 319 12 HOH HOH . M 8 HOH A 20 320 21 HOH HOH . M 8 HOH A 21 321 6 HOH HOH . M 8 HOH A 22 322 33 HOH HOH . M 8 HOH A 23 323 26 HOH HOH . M 8 HOH A 24 324 15 HOH HOH . M 8 HOH A 25 325 16 HOH HOH . M 8 HOH A 26 326 32 HOH HOH . M 8 HOH A 27 327 31 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 VHL . . . F 3 -24.375 1.246 8.445 0.55 66.8 ? C1 VHL 205 A 1 HETATM 2 C C2 VHL . . . F 3 -24.818 -1.349 8.4 0.55 67.41 ? C2 VHL 205 A 1 HETATM 3 C C3 VHL . . . F 3 -23.3 -0.282 6.493 0.55 59.49 ? C3 VHL 205 A 1 HETATM 4 C C6 VHL . . . F 3 -25.109 2.954 5.974 0.55 46.74 ? C6 VHL 205 A 1 HETATM 5 C C5 VHL . . . F 3 -25.386 3.754 4.99 0.55 46.69 ? C5 VHL 205 A 1 HETATM 6 C C4 VHL . . . F 3 -25.886 1.715 4.469 0.55 47.21 ? C4 VHL 205 A 1 HETATM 7 C C7 VHL . . . F 3 -28.213 0.005 7.172 0.55 59.44 ? C7 VHL 205 A 1 HETATM 8 C C9 VHL . . . F 3 -27.484 1.087 8.826 0.55 60.74 ? C9 VHL 205 A 1 HETATM 9 C C8 VHL . . . F 3 -28.796 1.133 8.902 0.55 68.04 ? C8 VHL 205 A 1 HETATM 10 N N1 VHL . . . F 3 -25.394 1.659 5.7 0.55 50 ? N1 VHL 205 A 1 HETATM 11 N N2 VHL . . . F 3 -25.885 2.965 4.031 0.55 44.93 ? N2 VHL 205 A 1 HETATM 12 N N3 VHL . . . F 3 -27.094 0.394 7.712 0.55 58.03 ? N3 VHL 205 A 1 HETATM 13 N N4 VHL . . . F 3 -29.22 0.447 7.891 0.55 69.11 ? N4 VHL 205 A 1 HETATM 14 O O1 VHL . . . F 3 -24 1.991 9.261 0.55 58.01 ? O1 VHL 205 A 1 HETATM 15 O O2 VHL . . . F 3 -24.681 -2.2 9.144 0.55 62.9 ? O2 VHL 205 A 1 HETATM 16 O O3 VHL . . . F 3 -22.29 -0.574 6.089 0.55 50.41 ? O3 VHL 205 A 1 HETATM 17 RE RE VHL . . . F 3 -25.042 0.07 7.141 0.55 77.48 ? RE VHL 205 A 1 HETATM 18 H H61 VHL . . . F 3 -24.744 3.259 6.769 0.55 56.13 ? H61 VHL 205 A 1 HETATM 19 H H51 VHL . . . F 3 -25.277 4.67 4.96 0.55 56.06 ? H51 VHL 205 A 1 HETATM 20 H H41 VHL . . . F 3 -26.185 1.001 3.961 0.55 56.69 ? H41 VHL 205 A 1 HETATM 21 H H71 VHL . . . F 3 -28.32 -0.501 6.406 0.55 71.36 ? H71 VHL 205 A 1 HETATM 22 H H91 VHL . . . F 3 -26.913 1.514 9.418 0.55 72.92 ? H91 VHL 205 A 1 HETATM 23 H H81 VHL . . . F 3 -29.295 1.555 9.545 0.55 81.69 ? H81 VHL 205 A 1 HETATM 24 H H21 VHL . . . F 3 -26.148 3.25 3.29 0.55 53.95 ? H21 VHL 205 A 1 HETATM 25 H H42 VHL . . . F 3 -30.047 0.31 7.704 0.55 82.97 ? H42 VHL 205 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 445 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #