data_9GHX # _model_server_result.job_id IKBSXue3qWcXkr-qkBvToA _model_server_result.datetime_utc '2024-12-16 12:43:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9ghx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":206}' # _entry.id 9GHX # _exptl.entry_id 9GHX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.33 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Tricarbonyl (aqua) (imidazole) rhenium(I)' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9GHX _cell.length_a 81.493 _cell.length_b 81.493 _cell.length_c 37.413 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9GHX _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall 'P 4nw 2abw' _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc1 A NE2 HIS 15 A HIS 15 1_555 G RE REI . A REI 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? metalc ? metalc2 A O SER 60 A SER 60 1_555 I NA NA . A NA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc3 A O CYS 64 A CYS 64 1_555 I NA NA . A NA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc4 A OG SER 72 A SER 72 1_555 I NA NA . A NA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc5 A O ARG 73 A ARG 73 1_555 I NA NA . A NA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc6 A OD2 ASP 101 A ASP 101 1_555 F RE VHL . A VHL 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc7 A OXT LEU 129 A LEU 129 1_555 K RE RE . A RE 210 7_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc8 I NA NA . A NA 208 1_555 M O HOH . A HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? metalc ? metalc9 I NA NA . A NA 208 1_555 M O HOH . A HOH 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? # _chem_comp.formula 'C6 H6 N2 O4 Re 1' _chem_comp.formula_weight 356.33 _chem_comp.id REI _chem_comp.mon_nstd_flag . _chem_comp.name 'Tricarbonyl (aqua) (imidazole) rhenium(I)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 REI trip 287 n n N1 C5 REI doub 288 n n N1 C6 REI sing 289 n n C2 O2 REI trip 290 n n N2 C5 REI sing 291 n n N2 C7 REI sing 292 n n C3 O3 REI trip 293 n y C6 C7 REI doub 294 n y N2 HN2 REI sing 295 n n C5 H5 REI sing 296 n y C6 H6 REI sing 297 n y C7 H7 REI sing 298 n n OW HOW REI sing 299 n n OW HOWA REI sing 300 n n RE C1 REI sing 301 n y RE C2 REI sing 302 n n RE C3 REI sing 303 n n RE N1 REI sing 304 n n RE OW REI sing 305 n n # _atom_sites.entry_id 9GHX _atom_sites.fract_transf_matrix[1][1] 0.012271 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012271 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026729 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 201 1130 CL CL . C 2 CL A 1 202 1131 CL CL . D 2 CL A 1 203 1132 CL CL . E 3 VHL A 1 204 1133 VHL RII . F 3 VHL A 1 205 1134 VHL RII . G 4 REI A 1 206 1135 REI RI3 . H 5 IMD A 1 207 1136 IMD IMD . I 6 NA A 1 208 1 NA NA . J 7 RE A 1 209 4 RE RE . K 7 RE A 1 210 5 RE RE . L 2 CL A 1 211 1 CL CL . M 8 HOH A 1 301 14 HOH HOH . M 8 HOH A 2 302 9 HOH HOH . M 8 HOH A 3 303 20 HOH HOH . M 8 HOH A 4 304 24 HOH HOH . M 8 HOH A 5 305 34 HOH HOH . M 8 HOH A 6 306 10 HOH HOH . M 8 HOH A 7 307 39 HOH HOH . M 8 HOH A 8 308 5 HOH HOH . M 8 HOH A 9 309 3 HOH HOH . M 8 HOH A 10 310 35 HOH HOH . M 8 HOH A 11 311 8 HOH HOH . M 8 HOH A 12 312 17 HOH HOH . M 8 HOH A 13 313 18 HOH HOH . M 8 HOH A 14 314 11 HOH HOH . M 8 HOH A 15 315 2 HOH HOH . M 8 HOH A 16 316 1 HOH HOH . M 8 HOH A 17 317 36 HOH HOH . M 8 HOH A 18 318 7 HOH HOH . M 8 HOH A 19 319 12 HOH HOH . M 8 HOH A 20 320 21 HOH HOH . M 8 HOH A 21 321 6 HOH HOH . M 8 HOH A 22 322 33 HOH HOH . M 8 HOH A 23 323 26 HOH HOH . M 8 HOH A 24 324 15 HOH HOH . M 8 HOH A 25 325 16 HOH HOH . M 8 HOH A 26 326 32 HOH HOH . M 8 HOH A 27 327 31 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 RE RE REI . . . G 4 -10.446 -7.937 -13.471 0.94 59.77 ? RE REI 206 A 1 HETATM 2 C C1 REI . . . G 4 -9.163 -7.951 -14.813 0.94 59.48 ? C1 REI 206 A 1 HETATM 3 N N1 REI . . . G 4 -10.132 -9.981 -12.861 0.94 58.88 ? N1 REI 206 A 1 HETATM 4 O O1 REI . . . G 4 -8.386 -7.954 -15.675 0.94 56.5 ? O1 REI 206 A 1 HETATM 5 C C2 REI . . . G 4 -11.585 -8.502 -14.866 0.94 55.68 ? C2 REI 206 A 1 HETATM 6 N N2 REI . . . G 4 -10.444 -12.021 -12.203 0.94 64.97 ? N2 REI 206 A 1 HETATM 7 O O2 REI . . . G 4 -12.219 -8.864 -15.723 0.94 56.35 ? O2 REI 206 A 1 HETATM 8 C C3 REI . . . G 4 -10.867 -6.194 -14.02 0.94 47.89 ? C3 REI 206 A 1 HETATM 9 O O3 REI . . . G 4 -11.145 -5.173 -14.4 0.94 47.08 ? O3 REI 206 A 1 HETATM 10 C C5 REI . . . G 4 -11.023 -10.863 -12.501 0.94 64.02 ? C5 REI 206 A 1 HETATM 11 C C6 REI . . . G 4 -8.926 -10.643 -12.792 0.94 53.34 ? C6 REI 206 A 1 HETATM 12 C C7 REI . . . G 4 -9.148 -11.899 -12.377 0.94 57.97 ? C7 REI 206 A 1 HETATM 13 O OW REI . . . G 4 -9.018 -7.47 -11.912 0.94 68.35 ? OW REI 206 A 1 HETATM 14 H HN2 REI . . . G 4 -10.854 -12.731 -11.944 0.94 78 ? HN2 REI 206 A 1 HETATM 15 H H5 REI . . . G 4 -11.939 -10.708 -12.456 0.94 76.86 ? H5 REI 206 A 1 HETATM 16 H H6 REI . . . G 4 -8.097 -10.274 -12.99 0.94 64.04 ? H6 REI 206 A 1 HETATM 17 H H7 REI . . . G 4 -8.51 -12.559 -12.241 0.94 69.6 ? H7 REI 206 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 348 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 17 #