data_9GHX
#
_model_server_result.job_id            BbsL9PjDa661fNGSSxAfJg 
_model_server_result.datetime_utc      '2024-11-01 10:32:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9ghx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":207}' 
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_entry.id    9GHX 
#
_exptl.entry_id    9GHX 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              69.085 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            IMIDAZOLE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9GHX 
_cell.length_a            81.493 
_cell.length_b            81.493 
_cell.length_c            37.413 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 9GHX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    'P 4nw 2abw' 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
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_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             H 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? 
disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? 
disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
metalc ? metalc1 A NE2 HIS 15 A HIS 15 1_555 G RE REI . A REI 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? 
metalc ? metalc2 A O SER 60 A SER 60 1_555 I NA NA . A NA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? 
metalc ? metalc3 A O CYS 64 A CYS 64 1_555 I NA NA . A NA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? 
metalc ? metalc4 A OG SER 72 A SER 72 1_555 I NA NA . A NA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? 
metalc ? metalc5 A O ARG 73 A ARG 73 1_555 I NA NA . A NA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? 
metalc ? metalc6 A OD2 ASP 101 A ASP 101 1_555 F RE VHL . A VHL 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? 
metalc ? metalc7 A OXT LEU 129 A LEU 129 1_555 K RE RE . A RE 210 7_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? 
metalc ? metalc8 I NA NA . A NA 208 1_555 M O HOH . A HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? 
metalc ? metalc9 I NA NA . A NA 208 1_555 M O HOH . A HOH 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? 
#
_chem_comp.formula           'C3 H5 N2 1' 
_chem_comp.formula_weight    69.085 
_chem_comp.id                IMD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              IMIDAZOLE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
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loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 IMD sing 173 n y 
N1 C5 IMD sing 174 n y 
N1 HN1 IMD sing 175 n n 
C2 N3 IMD doub 176 n y 
C2 H2 IMD sing 177 n n 
N3 C4 IMD sing 178 n y 
N3 HN3 IMD sing 179 n n 
C4 C5 IMD doub 180 n y 
C4 H4 IMD sing 181 n n 
C5 H5 IMD sing 182 n n 
#
_atom_sites.entry_id                     9GHX 
_atom_sites.fract_transf_matrix[1][1]    0.012271 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012271 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.026729 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CL A 1 201 1130 CL CL . 
C 2 CL A 1 202 1131 CL CL . 
D 2 CL A 1 203 1132 CL CL . 
E 3 VHL A 1 204 1133 VHL RII . 
F 3 VHL A 1 205 1134 VHL RII . 
G 4 REI A 1 206 1135 REI RI3 . 
H 5 IMD A 1 207 1136 IMD IMD . 
I 6 NA A 1 208 1 NA NA . 
J 7 RE A 1 209 4 RE RE . 
K 7 RE A 1 210 5 RE RE . 
L 2 CL A 1 211 1 CL CL . 
M 8 HOH A 1 301 14 HOH HOH . 
M 8 HOH A 2 302 9 HOH HOH . 
M 8 HOH A 3 303 20 HOH HOH . 
M 8 HOH A 4 304 24 HOH HOH . 
M 8 HOH A 5 305 34 HOH HOH . 
M 8 HOH A 6 306 10 HOH HOH . 
M 8 HOH A 7 307 39 HOH HOH . 
M 8 HOH A 8 308 5 HOH HOH . 
M 8 HOH A 9 309 3 HOH HOH . 
M 8 HOH A 10 310 35 HOH HOH . 
M 8 HOH A 11 311 8 HOH HOH . 
M 8 HOH A 12 312 17 HOH HOH . 
M 8 HOH A 13 313 18 HOH HOH . 
M 8 HOH A 14 314 11 HOH HOH . 
M 8 HOH A 15 315 2 HOH HOH . 
M 8 HOH A 16 316 1 HOH HOH . 
M 8 HOH A 17 317 36 HOH HOH . 
M 8 HOH A 18 318 7 HOH HOH . 
M 8 HOH A 19 319 12 HOH HOH . 
M 8 HOH A 20 320 21 HOH HOH . 
M 8 HOH A 21 321 6 HOH HOH . 
M 8 HOH A 22 322 33 HOH HOH . 
M 8 HOH A 23 323 26 HOH HOH . 
M 8 HOH A 24 324 15 HOH HOH . 
M 8 HOH A 25 325 16 HOH HOH . 
M 8 HOH A 26 326 32 HOH HOH . 
M 8 HOH A 27 327 31 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 IMD . . . H 5 -29.958 -0.684 -25.695 1 60.93 ? N1 IMD 207 A 1 
HETATM 2 C C2 IMD . . . H 5 -31.053 -0.185 -26.291 1 67.64 ? C2 IMD 207 A 1 
HETATM 3 N N3 IMD . . . H 5 -30.97 1.157 -26.288 1 66.78 ? N3 IMD 207 A 1 
HETATM 4 C C4 IMD . . . H 5 -29.822 1.508 -25.688 1 64.77 ? C4 IMD 207 A 1 
HETATM 5 C C5 IMD . . . H 5 -29.183 0.35 -25.316 1 64.35 ? C5 IMD 207 A 1 
HETATM 6 H HN1 IMD . . . H 5 -29.745 -1.691 -25.552 1 73.15 ? HN1 IMD 207 A 1 
HETATM 7 H H2 IMD . . . H 5 -31.867 -0.766 -26.706 1 81.21 ? H2 IMD 207 A 1 
HETATM 8 H HN3 IMD . . . H 5 -31.675 1.812 -26.681 1 80.18 ? HN3 IMD 207 A 1 
HETATM 9 H H4 IMD . . . H 5 -29.464 2.517 -25.529 1 77.76 ? H4 IMD 207 A 1 
HETATM 10 H H5 IMD . . . H 5 -28.23 0.282 -24.808 1 77.26 ? H5 IMD 207 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           10 
#