data_9GIP # _model_server_result.job_id 6gAYYBvcVcpH8wUr3A3uxA _model_server_result.datetime_utc '2025-06-24 11:30:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9gip # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 9GIP # _exptl.entry_id 9GIP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.915 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-[4-[(1~{R},3~{R})-3-azanylcyclopentyl]oxyphenyl]-~{N}-[(1~{S})-1-(4-chlorophenyl)ethyl]propanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.82 _cell.angle_gamma 90 _cell.entry_id 9GIP _cell.length_a 39.883 _cell.length_b 43.033 _cell.length_c 43.184 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9GIP _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 56 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 55 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C4 _struct_conn.ptnr2_label_comp_id A1ILY _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id A1ILY _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.811 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C22 H27 Cl N2 O2' _chem_comp.formula_weight 386.915 _chem_comp.id A1ILY _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-[4-[(1~{R},3~{R})-3-azanylcyclopentyl]oxyphenyl]-~{N}-[(1~{S})-1-(4-chlorophenyl)ethyl]propanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 A1ILY sing 1 n n C1 C16 A1ILY sing 2 n n C16 C17 A1ILY doub 3 n y C17 C18 A1ILY sing 4 n y C18 C19 A1ILY doub 5 n y C19 C20 A1ILY sing 6 n y C20 C21 A1ILY doub 7 n y C19 CL A1ILY sing 8 n n C1 N A1ILY sing 9 n n N C5 A1ILY sing 10 n n C5 C6 A1ILY doub 11 n y C6 C7 A1ILY sing 12 n y C7 C8 A1ILY doub 13 n y C8 C14 A1ILY sing 14 n y C14 C15 A1ILY doub 15 n y C8 O1 A1ILY sing 16 n n O1 C9 A1ILY sing 17 n n C9 C10 A1ILY sing 18 n n C10 C11 A1ILY sing 19 n n C11 C12 A1ILY sing 20 n n C12 C13 A1ILY sing 21 n n C12 N1 A1ILY sing 22 n n N C2 A1ILY sing 23 n n C2 O A1ILY doub 24 n n C2 C3 A1ILY sing 25 n n C3 C4 A1ILY sing 26 n n C21 C16 A1ILY sing 27 n y C15 C5 A1ILY sing 28 n y C13 C9 A1ILY sing 29 n n C1 H A1ILY sing 30 n n C3 H7 A1ILY sing 31 n n C3 H6 A1ILY sing 32 n n C7 H12 A1ILY sing 33 n n C9 H1 A1ILY sing 34 n n C10 H14 A1ILY sing 35 n n C10 H13 A1ILY sing 36 n n C11 H16 A1ILY sing 37 n n C11 H15 A1ILY sing 38 n n C12 H2 A1ILY sing 39 n n C13 H19 A1ILY sing 40 n n C13 H20 A1ILY sing 41 n n C14 H21 A1ILY sing 42 n n C15 H22 A1ILY sing 43 n n C20 H25 A1ILY sing 44 n n C21 H26 A1ILY sing 45 n n C18 H24 A1ILY sing 46 n n C17 H23 A1ILY sing 47 n n C H3 A1ILY sing 48 n n C H4 A1ILY sing 49 n n C H5 A1ILY sing 50 n n C4 H10 A1ILY sing 51 n n C4 H9 A1ILY sing 52 n n C4 H8 A1ILY sing 53 n n C6 H11 A1ILY sing 54 n n N1 H17 A1ILY sing 55 n n N1 HX1 A1ILY sing 56 n n # _atom_sites.entry_id 9GIP _atom_sites.fract_transf_matrix[1][1] 0.025073 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002999 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023238 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023322 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1ILY A 1 201 1 A1ILY INH . C 3 HOH A 1 301 6 HOH HOH . C 3 HOH A 2 302 72 HOH HOH . C 3 HOH A 3 303 73 HOH HOH . C 3 HOH A 4 304 75 HOH HOH . C 3 HOH A 5 305 17 HOH HOH . C 3 HOH A 6 306 64 HOH HOH . C 3 HOH A 7 307 15 HOH HOH . C 3 HOH A 8 308 54 HOH HOH . C 3 HOH A 9 309 16 HOH HOH . C 3 HOH A 10 310 38 HOH HOH . C 3 HOH A 11 311 9 HOH HOH . C 3 HOH A 12 312 19 HOH HOH . C 3 HOH A 13 313 53 HOH HOH . C 3 HOH A 14 314 30 HOH HOH . C 3 HOH A 15 315 76 HOH HOH . C 3 HOH A 16 316 58 HOH HOH . C 3 HOH A 17 317 50 HOH HOH . C 3 HOH A 18 318 13 HOH HOH . C 3 HOH A 19 319 24 HOH HOH . C 3 HOH A 20 320 2 HOH HOH . C 3 HOH A 21 321 20 HOH HOH . C 3 HOH A 22 322 26 HOH HOH . C 3 HOH A 23 323 52 HOH HOH . C 3 HOH A 24 324 28 HOH HOH . C 3 HOH A 25 325 44 HOH HOH . C 3 HOH A 26 326 5 HOH HOH . C 3 HOH A 27 327 25 HOH HOH . C 3 HOH A 28 328 55 HOH HOH . C 3 HOH A 29 329 22 HOH HOH . C 3 HOH A 30 330 23 HOH HOH . C 3 HOH A 31 331 33 HOH HOH . C 3 HOH A 32 332 1 HOH HOH . C 3 HOH A 33 333 32 HOH HOH . C 3 HOH A 34 334 45 HOH HOH . C 3 HOH A 35 335 29 HOH HOH . C 3 HOH A 36 336 43 HOH HOH . C 3 HOH A 37 337 36 HOH HOH . C 3 HOH A 38 338 34 HOH HOH . C 3 HOH A 39 339 62 HOH HOH . C 3 HOH A 40 340 27 HOH HOH . C 3 HOH A 41 341 56 HOH HOH . C 3 HOH A 42 342 14 HOH HOH . C 3 HOH A 43 343 8 HOH HOH . C 3 HOH A 44 344 40 HOH HOH . C 3 HOH A 45 345 21 HOH HOH . C 3 HOH A 46 346 48 HOH HOH . C 3 HOH A 47 347 7 HOH HOH . C 3 HOH A 48 348 41 HOH HOH . C 3 HOH A 49 349 71 HOH HOH . C 3 HOH A 50 350 69 HOH HOH . C 3 HOH A 51 351 51 HOH HOH . C 3 HOH A 52 352 57 HOH HOH . C 3 HOH A 53 353 63 HOH HOH . C 3 HOH A 54 354 66 HOH HOH . C 3 HOH A 55 355 49 HOH HOH . C 3 HOH A 56 356 39 HOH HOH . C 3 HOH A 57 357 65 HOH HOH . C 3 HOH A 58 358 10 HOH HOH . C 3 HOH A 59 359 37 HOH HOH . C 3 HOH A 60 360 61 HOH HOH . C 3 HOH A 61 361 59 HOH HOH . C 3 HOH A 62 362 68 HOH HOH . C 3 HOH A 63 363 67 HOH HOH . C 3 HOH A 64 364 70 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 A1ILY . . . B 2 -1.389 3.654 3.776 1 37.22 ? C1 A1ILY 201 A 1 HETATM 2 C C2 A1ILY . . . B 2 -2.832 3.174 1.864 1 38.04 ? C2 A1ILY 201 A 1 HETATM 3 C C3 A1ILY . . . B 2 -3.568 2.207 0.983 1 38.12 ? C3 A1ILY 201 A 1 HETATM 4 C C7 A1ILY . . . B 2 -0.584 -0.713 2.978 1 38.53 ? C7 A1ILY 201 A 1 HETATM 5 C C8 A1ILY . . . B 2 -1.474 -1.383 3.802 1 39.85 ? C8 A1ILY 201 A 1 HETATM 6 C C9 A1ILY . . . B 2 -0.193 -3.46 3.925 1 42.97 ? C9 A1ILY 201 A 1 HETATM 7 C C10 A1ILY . . . B 2 -0.883 -4.624 3.272 1 43.38 ? C10 A1ILY 201 A 1 HETATM 8 C C11 A1ILY . . . B 2 -1.503 -5.347 4.48 1 43.48 ? C11 A1ILY 201 A 1 HETATM 9 C C12 A1ILY . . . B 2 -0.435 -5.258 5.557 1 43.72 ? C12 A1ILY 201 A 1 HETATM 10 C C13 A1ILY . . . B 2 0.464 -4.066 5.16 1 43.42 ? C13 A1ILY 201 A 1 HETATM 11 C C14 A1ILY . . . B 2 -2.602 -0.737 4.283 1 39.32 ? C14 A1ILY 201 A 1 HETATM 12 C C15 A1ILY . . . B 2 -2.836 0.584 3.948 1 38.54 ? C15 A1ILY 201 A 1 HETATM 13 C C16 A1ILY . . . B 2 0.093 3.659 3.442 1 37.92 ? C16 A1ILY 201 A 1 HETATM 14 C C19 A1ILY . . . B 2 2.762 3.48 2.73 1 39.55 ? C19 A1ILY 201 A 1 HETATM 15 C C20 A1ILY . . . B 2 2.401 3.296 4.045 1 38.77 ? C20 A1ILY 201 A 1 HETATM 16 C C21 A1ILY . . . B 2 1.066 3.387 4.394 1 38.08 ? C21 A1ILY 201 A 1 HETATM 17 CL CL A1ILY . . . B 2 4.408 3.195 2.251 1 41.34 ? CL A1ILY 201 A 1 HETATM 18 C C18 A1ILY . . . B 2 1.824 3.76 1.766 1 38.87 ? C18 A1ILY 201 A 1 HETATM 19 C C17 A1ILY . . . B 2 0.494 3.849 2.128 1 38.37 ? C17 A1ILY 201 A 1 HETATM 20 C C A1ILY . . . B 2 -1.783 3.518 5.244 1 36.38 ? C A1ILY 201 A 1 HETATM 21 N N A1ILY . . . B 2 -2.107 2.677 2.91 1 37.62 ? N A1ILY 201 A 1 HETATM 22 C C4 A1ILY . . . B 2 -3.21 2.42 -0.435 1 38.42 ? C4 A1ILY 201 A 1 HETATM 23 O O A1ILY . . . B 2 -2.841 4.372 1.601 1 38.18 ? O A1ILY 201 A 1 HETATM 24 C C5 A1ILY . . . B 2 -1.945 1.271 3.132 1 38.01 ? C5 A1ILY 201 A 1 HETATM 25 C C6 A1ILY . . . B 2 -0.819 0.609 2.646 1 37.82 ? C6 A1ILY 201 A 1 HETATM 26 O O1 A1ILY . . . B 2 -1.318 -2.64 4.343 1 41.88 ? O1 A1ILY 201 A 1 HETATM 27 N N1 A1ILY . . . B 2 0.352 -6.525 5.644 1 44.13 ? N1 A1ILY 201 A 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #