data_9GIR # _model_server_result.job_id TuAQAb8_rk6OVr_AG3vHJg _model_server_result.datetime_utc '2025-08-28 11:25:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9gir # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 9GIR # _exptl.entry_id 9GIR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 582.539 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-[4-[(1~{R},3~{R})-3-[[(3~{R})-1,1-bis(oxidanylidene)thiolan-3-yl]carbamoylamino]cyclopentyl]oxy-3-chloranyl-phenyl]-~{N}-[(1~{S})-1-(4-chlorophenyl)ethyl]propanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.35 _cell.angle_gamma 90 _cell.entry_id 9GIR _cell.length_a 40.098 _cell.length_b 42.903 _cell.length_c 43.353 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9GIR _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 56 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 55 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C38 _struct_conn.ptnr2_label_comp_id A1ILX _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id A1ILX _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.82 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C27 H33 Cl2 N3 O5 S' _chem_comp.formula_weight 582.539 _chem_comp.id A1ILX _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-[4-[(1~{R},3~{R})-3-[[(3~{R})-1,1-bis(oxidanylidene)thiolan-3-yl]carbamoylamino]cyclopentyl]oxy-3-chloranyl-phenyl]-~{N}-[(1~{S})-1-(4-chlorophenyl)ethyl]propanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 A1ILX sing 1 n n C2 C3 A1ILX sing 2 n n C3 C4 A1ILX doub 3 n y C4 C5 A1ILX sing 4 n y C5 C6 A1ILX doub 5 n y C6 C7 A1ILX sing 6 n y C7 C8 A1ILX doub 7 n y C6 CL9 A1ILX sing 8 n n C2 N10 A1ILX sing 9 n n N10 C11 A1ILX sing 10 n n C11 C12 A1ILX doub 11 n y C12 C13 A1ILX sing 12 n y C13 C14 A1ILX doub 13 n y C14 C15 A1ILX sing 14 n y C15 C16 A1ILX doub 15 n y C15 CL17 A1ILX sing 16 n n C14 O18 A1ILX sing 17 n n O18 C19 A1ILX sing 18 n n C19 C20 A1ILX sing 19 n n C20 C21 A1ILX sing 20 n n C21 C22 A1ILX sing 21 n n C22 C23 A1ILX sing 22 n n C22 N24 A1ILX sing 23 n n N24 C25 A1ILX sing 24 n n C25 O26 A1ILX doub 25 n n C25 N27 A1ILX sing 26 n n N27 C28 A1ILX sing 27 n n C28 C29 A1ILX sing 28 n n C29 C30 A1ILX sing 29 n n C30 S31 A1ILX sing 30 n n S31 O32 A1ILX doub 31 n n S31 O33 A1ILX doub 32 n n S31 C34 A1ILX sing 33 n n N10 C35 A1ILX sing 34 n n C35 O36 A1ILX doub 35 n n C35 C37 A1ILX sing 36 n n C37 C38 A1ILX sing 37 n n C8 C3 A1ILX sing 38 n y C16 C11 A1ILX sing 39 n y C23 C19 A1ILX sing 40 n n C34 C28 A1ILX sing 41 n n C1 H1C A1ILX sing 42 n n C1 H1A A1ILX sing 43 n n C1 H1B A1ILX sing 44 n n C2 H2 A1ILX sing 45 n n C7 H7 A1ILX sing 46 n n C8 H8 A1ILX sing 47 n n C12 H12 A1ILX sing 48 n n C13 H13 A1ILX sing 49 n n C16 H16 A1ILX sing 50 n n C19 H19 A1ILX sing 51 n n C20 H20B A1ILX sing 52 n n C20 H20A A1ILX sing 53 n n C21 H21B A1ILX sing 54 n n C21 H21A A1ILX sing 55 n n C22 H22 A1ILX sing 56 n n C30 H30B A1ILX sing 57 n n C30 H30A A1ILX sing 58 n n C34 H34B A1ILX sing 59 n n C34 H34A A1ILX sing 60 n n C4 H4 A1ILX sing 61 n n C5 H5 A1ILX sing 62 n n C23 H23B A1ILX sing 63 n n C23 H23A A1ILX sing 64 n n N24 H24 A1ILX sing 65 n n N27 H27 A1ILX sing 66 n n C28 H28 A1ILX sing 67 n n C29 H29B A1ILX sing 68 n n C29 H29A A1ILX sing 69 n n C37 H37B A1ILX sing 70 n n C37 H37A A1ILX sing 71 n n C38 H38C A1ILX sing 72 n n C38 H38B A1ILX sing 73 n n C38 H38A A1ILX sing 74 n n # _atom_sites.entry_id 9GIR _atom_sites.fract_transf_matrix[1][1] 0.024939 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005006 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023308 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023527 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1ILX A 1 201 1 A1ILX INH . C 3 HOH A 1 301 128 HOH HOH . C 3 HOH A 2 302 90 HOH HOH . C 3 HOH A 3 303 64 HOH HOH . C 3 HOH A 4 304 120 HOH HOH . C 3 HOH A 5 305 115 HOH HOH . C 3 HOH A 6 306 119 HOH HOH . C 3 HOH A 7 307 59 HOH HOH . C 3 HOH A 8 308 14 HOH HOH . C 3 HOH A 9 309 110 HOH HOH . C 3 HOH A 10 310 107 HOH HOH . C 3 HOH A 11 311 132 HOH HOH . C 3 HOH A 12 312 6 HOH HOH . C 3 HOH A 13 313 2 HOH HOH . C 3 HOH A 14 314 40 HOH HOH . C 3 HOH A 15 315 125 HOH HOH . C 3 HOH A 16 316 89 HOH HOH . C 3 HOH A 17 317 35 HOH HOH . C 3 HOH A 18 318 87 HOH HOH . C 3 HOH A 19 319 10 HOH HOH . C 3 HOH A 20 320 21 HOH HOH . C 3 HOH A 21 321 68 HOH HOH . C 3 HOH A 22 322 126 HOH HOH . C 3 HOH A 23 323 15 HOH HOH . C 3 HOH A 24 324 56 HOH HOH . C 3 HOH A 25 325 25 HOH HOH . C 3 HOH A 26 326 109 HOH HOH . C 3 HOH A 27 327 53 HOH HOH . C 3 HOH A 28 328 122 HOH HOH . C 3 HOH A 29 329 124 HOH HOH . C 3 HOH A 30 330 46 HOH HOH . C 3 HOH A 31 331 81 HOH HOH . C 3 HOH A 32 332 24 HOH HOH . C 3 HOH A 33 333 39 HOH HOH . C 3 HOH A 34 334 116 HOH HOH . C 3 HOH A 35 335 105 HOH HOH . C 3 HOH A 36 336 71 HOH HOH . C 3 HOH A 37 337 32 HOH HOH . C 3 HOH A 38 338 13 HOH HOH . C 3 HOH A 39 339 23 HOH HOH . C 3 HOH A 40 340 9 HOH HOH . C 3 HOH A 41 341 31 HOH HOH . C 3 HOH A 42 342 114 HOH HOH . C 3 HOH A 43 343 98 HOH HOH . C 3 HOH A 44 344 58 HOH HOH . C 3 HOH A 45 345 44 HOH HOH . C 3 HOH A 46 346 55 HOH HOH . C 3 HOH A 47 347 8 HOH HOH . C 3 HOH A 48 348 130 HOH HOH . C 3 HOH A 49 349 5 HOH HOH . C 3 HOH A 50 350 93 HOH HOH . C 3 HOH A 51 351 11 HOH HOH . C 3 HOH A 52 352 92 HOH HOH . C 3 HOH A 53 353 118 HOH HOH . C 3 HOH A 54 354 62 HOH HOH . C 3 HOH A 55 355 77 HOH HOH . C 3 HOH A 56 356 127 HOH HOH . C 3 HOH A 57 357 19 HOH HOH . C 3 HOH A 58 358 36 HOH HOH . C 3 HOH A 59 359 7 HOH HOH . C 3 HOH A 60 360 54 HOH HOH . C 3 HOH A 61 361 99 HOH HOH . C 3 HOH A 62 362 111 HOH HOH . C 3 HOH A 63 363 26 HOH HOH . C 3 HOH A 64 364 60 HOH HOH . C 3 HOH A 65 365 113 HOH HOH . C 3 HOH A 66 366 33 HOH HOH . C 3 HOH A 67 367 34 HOH HOH . C 3 HOH A 68 368 104 HOH HOH . C 3 HOH A 69 369 101 HOH HOH . C 3 HOH A 70 370 52 HOH HOH . C 3 HOH A 71 371 17 HOH HOH . C 3 HOH A 72 372 29 HOH HOH . C 3 HOH A 73 373 123 HOH HOH . C 3 HOH A 74 374 47 HOH HOH . C 3 HOH A 75 375 91 HOH HOH . C 3 HOH A 76 376 38 HOH HOH . C 3 HOH A 77 377 66 HOH HOH . C 3 HOH A 78 378 121 HOH HOH . C 3 HOH A 79 379 69 HOH HOH . C 3 HOH A 80 380 78 HOH HOH . C 3 HOH A 81 381 42 HOH HOH . C 3 HOH A 82 382 61 HOH HOH . C 3 HOH A 83 383 117 HOH HOH . C 3 HOH A 84 384 45 HOH HOH . C 3 HOH A 85 385 100 HOH HOH . C 3 HOH A 86 386 72 HOH HOH . C 3 HOH A 87 387 102 HOH HOH . C 3 HOH A 88 388 97 HOH HOH . C 3 HOH A 89 389 88 HOH HOH . C 3 HOH A 90 390 28 HOH HOH . C 3 HOH A 91 391 84 HOH HOH . C 3 HOH A 92 392 86 HOH HOH . C 3 HOH A 93 393 70 HOH HOH . C 3 HOH A 94 394 131 HOH HOH . C 3 HOH A 95 395 129 HOH HOH . C 3 HOH A 96 396 49 HOH HOH . C 3 HOH A 97 397 80 HOH HOH . C 3 HOH A 98 398 65 HOH HOH . C 3 HOH A 99 399 63 HOH HOH . C 3 HOH A 100 400 76 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 A1ILX . . . B 2 -2.297 2.743 1.958 1 19.3 ? C1 A1ILX 201 A 1 HETATM 2 C C2 A1ILX . . . B 2 -1.792 2.612 0.522 1 17.3 ? C2 A1ILX 201 A 1 HETATM 3 C C3 A1ILX . . . B 2 -0.438 3.279 0.332 1 15.82 ? C3 A1ILX 201 A 1 HETATM 4 C C7 A1ILX . . . B 2 1.235 4.267 -1.093 1 16.43 ? C7 A1ILX 201 A 1 HETATM 5 C C8 A1ILX . . . B 2 -0.008 3.682 -0.922 1 16.08 ? C8 A1ILX 201 A 1 HETATM 6 C C11 A1ILX . . . B 2 -0.715 0.327 0.729 1 12.54 ? C11 A1ILX 201 A 1 HETATM 7 C C12 A1ILX . . . B 2 -1.079 -0.525 1.761 1 13.22 ? C12 A1ILX 201 A 1 HETATM 8 C C13 A1ILX . . . B 2 -0.131 -1.325 2.37 1 12.04 ? C13 A1ILX 201 A 1 HETATM 9 C C14 A1ILX . . . B 2 1.192 -1.28 1.944 1 10.85 ? C14 A1ILX 201 A 1 HETATM 10 C C15 A1ILX . . . B 2 1.553 -0.42 0.91 1 11.38 ? C15 A1ILX 201 A 1 HETATM 11 C C16 A1ILX . . . B 2 0.612 0.383 0.292 1 12.33 ? C16 A1ILX 201 A 1 HETATM 12 C C19 A1ILX . . . B 2 1.902 -3.011 3.484 1 10.05 ? C19 A1ILX 201 A 1 HETATM 13 C C20 A1ILX . . . B 2 3.284 -3.401 3.983 1 10.46 ? C20 A1ILX 201 A 1 HETATM 14 C C21 A1ILX . . . B 2 3.72 -4.448 2.947 1 11.22 ? C21 A1ILX 201 A 1 HETATM 15 C C22 A1ILX . . . B 2 2.452 -5.284 2.777 1 10.08 ? C22 A1ILX 201 A 1 HETATM 16 C C30 A1ILX . . . B 2 2.669 -10.502 7.036 1 12.24 ? C30 A1ILX 201 A 1 HETATM 17 C C34 A1ILX . . . B 2 4.257 -10.183 4.923 1 14.05 ? C34 A1ILX 201 A 1 HETATM 18 C C35 A1ILX . . . B 2 -2.526 0.691 -0.87 1 15.81 ? C35 A1ILX 201 A 1 HETATM 19 C C4 A1ILX . . . B 2 0.416 3.476 1.412 1 15.51 ? C4 A1ILX 201 A 1 HETATM 20 C C5 A1ILX . . . B 2 1.659 4.057 1.25 1 16.83 ? C5 A1ILX 201 A 1 HETATM 21 C C6 A1ILX . . . B 2 2.053 4.441 0.003 1 18.16 ? C6 A1ILX 201 A 1 HETATM 22 CL CL9 A1ILX . . . B 2 3.614 5.179 -0.196 1 23.38 ? CL9 A1ILX 201 A 1 HETATM 23 N N10 A1ILX . . . B 2 -1.701 1.16 0.113 1 15.15 ? N10 A1ILX 201 A 1 HETATM 24 CL CL17 A1ILX . . . B 2 3.216 -0.36 0.38 1 13.24 ? CL17 A1ILX 201 A 1 HETATM 25 O O18 A1ILX . . . B 2 2.207 -2.023 2.482 1 10.43 ? O18 A1ILX 201 A 1 HETATM 26 C C23 A1ILX . . . B 2 1.304 -4.274 2.851 1 10.12 ? C23 A1ILX 201 A 1 HETATM 27 N N24 A1ILX . . . B 2 2.323 -6.28 3.842 1 9.81 ? N24 A1ILX 201 A 1 HETATM 28 C C25 A1ILX . . . B 2 2.785 -7.538 3.719 1 9.99 ? C25 A1ILX 201 A 1 HETATM 29 O O26 A1ILX . . . B 2 3.301 -7.939 2.679 1 11.39 ? O26 A1ILX 201 A 1 HETATM 30 N N27 A1ILX . . . B 2 2.622 -8.337 4.791 1 10.26 ? N27 A1ILX 201 A 1 HETATM 31 C C28 A1ILX . . . B 2 2.807 -9.784 4.669 1 11.78 ? C28 A1ILX 201 A 1 HETATM 32 C C29 A1ILX . . . B 2 1.951 -10.546 5.696 1 12.22 ? C29 A1ILX 201 A 1 HETATM 33 S S31 A1ILX . . . B 2 4.363 -10.8 6.58 1 16.29 ? S31 A1ILX 201 A 1 HETATM 34 O O32 A1ILX . . . B 2 5.257 -10.014 7.377 1 20.94 ? O32 A1ILX 201 A 1 HETATM 35 O O33 A1ILX . . . B 2 4.574 -12.224 6.553 1 19.67 ? O33 A1ILX 201 A 1 HETATM 36 O O36 A1ILX . . . B 2 -3.308 1.429 -1.453 1 17.61 ? O36 A1ILX 201 A 1 HETATM 37 C C37 A1ILX . . . B 2 -2.404 -0.761 -1.276 1 15.08 ? C37 A1ILX 201 A 1 HETATM 38 C C38 A1ILX . . . B 2 -2.784 -1.06 -2.728 1 15.01 ? C38 A1ILX 201 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 38 #