data_9GIS
#
_model_server_result.job_id            FtAQW3Yo8VaFCNsAUOhPCA 
_model_server_result.datetime_utc      '2025-06-21 02:23:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9gis 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":201}' 
#
_entry.id    9GIS 
#
_exptl.entry_id    9GIS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              499.045 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ~{N}-[(1~{S})-1-(4-chlorophenyl)ethyl]-~{N}-[4-[(1~{R},3~{R})-3-[[(3~{S})-pyrrolidin-3-yl]carbamoylamino]cyclopentyl]oxyphenyl]propanamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.12 
_cell.angle_gamma         90 
_cell.entry_id            9GIS 
_cell.length_a            43.37 
_cell.length_b            42.94 
_cell.length_c            80.99 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9GIS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 56 A CYS 55 1_555 C C35 A1ILU . A A1ILU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.811 ? 
covale ? covale2 B SG CYS 56 B CYS 55 1_555 D C35 A1ILU . B A1ILU 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.821 ? 
#
_chem_comp.formula           'C27 H35 Cl N4 O3' 
_chem_comp.formula_weight    499.045 
_chem_comp.id                A1ILU 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ~{N}-[(1~{S})-1-(4-chlorophenyl)ethyl]-~{N}-[4-[(1~{R},3~{R})-3-[[(3~{S})-pyrrolidin-3-yl]carbamoylamino]cyclopentyl]oxyphenyl]propanamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 A1ILU sing 1 n n 
C2 C3 A1ILU sing 2 n n 
C3 C4 A1ILU doub 3 n y 
C4 C5 A1ILU sing 4 n y 
C5 C6 A1ILU doub 5 n y 
C6 C7 A1ILU sing 6 n y 
C7 C8 A1ILU doub 7 n y 
C6 CL9 A1ILU sing 8 n n 
C2 N10 A1ILU sing 9 n n 
N10 C11 A1ILU sing 10 n n 
C11 C12 A1ILU doub 11 n y 
C12 C13 A1ILU sing 12 n y 
C13 C14 A1ILU doub 13 n y 
C14 C15 A1ILU sing 14 n y 
C15 C16 A1ILU doub 15 n y 
C14 O17 A1ILU sing 16 n n 
O17 C18 A1ILU sing 17 n n 
C18 C19 A1ILU sing 18 n n 
C19 C20 A1ILU sing 19 n n 
C20 C21 A1ILU sing 20 n n 
C21 C22 A1ILU sing 21 n n 
C21 N23 A1ILU sing 22 n n 
N23 C24 A1ILU sing 23 n n 
C24 O25 A1ILU doub 24 n n 
C24 N26 A1ILU sing 25 n n 
N26 C27 A1ILU sing 26 n n 
C27 C28 A1ILU sing 27 n n 
C28 C29 A1ILU sing 28 n n 
C29 N30 A1ILU sing 29 n n 
N30 C31 A1ILU sing 30 n n 
N10 C32 A1ILU sing 31 n n 
C32 O33 A1ILU doub 32 n n 
C32 C34 A1ILU sing 33 n n 
C34 C35 A1ILU sing 34 n n 
C8 C3 A1ILU sing 35 n y 
C16 C11 A1ILU sing 36 n y 
C22 C18 A1ILU sing 37 n n 
C31 C27 A1ILU sing 38 n n 
C1 H1C A1ILU sing 39 n n 
C1 H1B A1ILU sing 40 n n 
C1 H1A A1ILU sing 41 n n 
C2 H2 A1ILU sing 42 n n 
C7 H7 A1ILU sing 43 n n 
C8 H8 A1ILU sing 44 n n 
C12 H12 A1ILU sing 45 n n 
C13 H13 A1ILU sing 46 n n 
C15 H15 A1ILU sing 47 n n 
C16 H16 A1ILU sing 48 n n 
C19 H19A A1ILU sing 49 n n 
C19 H19B A1ILU sing 50 n n 
C20 H20B A1ILU sing 51 n n 
C20 H20A A1ILU sing 52 n n 
C21 H21 A1ILU sing 53 n n 
C22 H22A A1ILU sing 54 n n 
C22 H22B A1ILU sing 55 n n 
N23 H23 A1ILU sing 56 n n 
N26 H26 A1ILU sing 57 n n 
C27 H27 A1ILU sing 58 n n 
C31 H31A A1ILU sing 59 n n 
C31 H31B A1ILU sing 60 n n 
C34 H34A A1ILU sing 61 n n 
C34 H34B A1ILU sing 62 n n 
C35 H35B A1ILU sing 63 n n 
C35 H35A A1ILU sing 64 n n 
C35 H35C A1ILU sing 65 n n 
C4 H4 A1ILU sing 66 n n 
C5 H5 A1ILU sing 67 n n 
C18 H18 A1ILU sing 68 n n 
C28 H28A A1ILU sing 69 n n 
C28 H28B A1ILU sing 70 n n 
C29 H29B A1ILU sing 71 n n 
C29 H29A A1ILU sing 72 n n 
N30 H30B A1ILU sing 73 n n 
#
_atom_sites.entry_id                     9GIS 
_atom_sites.fract_transf_matrix[1][1]    0.023057 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004115 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023288 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012542 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 A1ILU A 1 201 1 A1ILU INH . 
D 2 A1ILU B 1 201 1 A1ILU INH . 
E 3 HOH A 1 301 71 HOH HOH . 
E 3 HOH A 2 302 74 HOH HOH . 
E 3 HOH A 3 303 63 HOH HOH . 
E 3 HOH A 4 304 61 HOH HOH . 
E 3 HOH A 5 305 67 HOH HOH . 
E 3 HOH A 6 306 10 HOH HOH . 
E 3 HOH A 7 307 69 HOH HOH . 
E 3 HOH A 8 308 24 HOH HOH . 
E 3 HOH A 9 309 62 HOH HOH . 
E 3 HOH A 10 310 15 HOH HOH . 
E 3 HOH A 11 311 4 HOH HOH . 
E 3 HOH A 12 312 1 HOH HOH . 
E 3 HOH A 13 313 64 HOH HOH . 
E 3 HOH A 14 314 70 HOH HOH . 
E 3 HOH A 15 315 7 HOH HOH . 
E 3 HOH A 16 316 72 HOH HOH . 
E 3 HOH A 17 317 29 HOH HOH . 
E 3 HOH A 18 318 33 HOH HOH . 
E 3 HOH A 19 319 20 HOH HOH . 
E 3 HOH A 20 320 38 HOH HOH . 
E 3 HOH A 21 321 46 HOH HOH . 
E 3 HOH A 22 322 48 HOH HOH . 
E 3 HOH A 23 323 19 HOH HOH . 
E 3 HOH A 24 324 13 HOH HOH . 
E 3 HOH A 25 325 56 HOH HOH . 
E 3 HOH A 26 326 5 HOH HOH . 
E 3 HOH A 27 327 60 HOH HOH . 
E 3 HOH A 28 328 49 HOH HOH . 
F 3 HOH B 1 301 27 HOH HOH . 
F 3 HOH B 2 302 75 HOH HOH . 
F 3 HOH B 3 303 44 HOH HOH . 
F 3 HOH B 4 304 2 HOH HOH . 
F 3 HOH B 5 305 23 HOH HOH . 
F 3 HOH B 6 306 9 HOH HOH . 
F 3 HOH B 7 307 22 HOH HOH . 
F 3 HOH B 8 308 16 HOH HOH . 
F 3 HOH B 9 309 53 HOH HOH . 
F 3 HOH B 10 310 31 HOH HOH . 
F 3 HOH B 11 311 52 HOH HOH . 
F 3 HOH B 12 312 17 HOH HOH . 
F 3 HOH B 13 313 55 HOH HOH . 
F 3 HOH B 14 314 66 HOH HOH . 
F 3 HOH B 15 315 6 HOH HOH . 
F 3 HOH B 16 316 18 HOH HOH . 
F 3 HOH B 17 317 47 HOH HOH . 
F 3 HOH B 18 318 26 HOH HOH . 
F 3 HOH B 19 319 42 HOH HOH . 
F 3 HOH B 20 320 43 HOH HOH . 
F 3 HOH B 21 321 39 HOH HOH . 
F 3 HOH B 22 322 40 HOH HOH . 
F 3 HOH B 23 323 35 HOH HOH . 
F 3 HOH B 24 324 30 HOH HOH . 
F 3 HOH B 25 325 34 HOH HOH . 
F 3 HOH B 26 326 14 HOH HOH . 
F 3 HOH B 27 327 32 HOH HOH . 
F 3 HOH B 28 328 8 HOH HOH . 
F 3 HOH B 29 329 25 HOH HOH . 
F 3 HOH B 30 330 37 HOH HOH . 
F 3 HOH B 31 331 73 HOH HOH . 
F 3 HOH B 32 332 68 HOH HOH . 
F 3 HOH B 33 333 21 HOH HOH . 
F 3 HOH B 34 334 57 HOH HOH . 
F 3 HOH B 35 335 76 HOH HOH . 
F 3 HOH B 36 336 58 HOH HOH . 
F 3 HOH B 37 337 65 HOH HOH . 
F 3 HOH B 38 338 59 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 A1ILU . . . D 2 -7.689 5.529 21.314 1 31.17 ? C1 A1ILU 201 B 1 
HETATM 2 C C2 A1ILU . . . D 2 -6.255 6.034 21.212 1 31.72 ? C2 A1ILU 201 B 1 
HETATM 3 C C3 A1ILU . . . D 2 -5.668 6.089 19.811 1 31.79 ? C3 A1ILU 201 B 1 
HETATM 4 C C7 A1ILU . . . D 2 -5.974 6.138 17.417 1 33.8 ? C7 A1ILU 201 B 1 
HETATM 5 C C8 A1ILU . . . D 2 -6.495 6.087 18.696 1 32.54 ? C8 A1ILU 201 B 1 
HETATM 6 C C11 A1ILU . . . D 2 -6.734 8.519 21.401 1 29.46 ? C11 A1ILU 201 B 1 
HETATM 7 C C12 A1ILU . . . D 2 -6.098 9.303 20.441 1 28.52 ? C12 A1ILU 201 B 1 
HETATM 8 C C13 A1ILU . . . D 2 -6.715 10.437 19.942 1 27.26 ? C13 A1ILU 201 B 1 
HETATM 9 C C14 A1ILU . . . D 2 -7.976 10.795 20.4 1 25.88 ? C14 A1ILU 201 B 1 
HETATM 10 C C15 A1ILU . . . D 2 -8.616 10.018 21.354 1 26.63 ? C15 A1ILU 201 B 1 
HETATM 11 C C16 A1ILU . . . D 2 -7.996 8.885 21.85 1 28.03 ? C16 A1ILU 201 B 1 
HETATM 12 O O17 A1ILU . . . D 2 -8.731 11.884 20.008 1 25.15 ? O17 A1ILU 201 B 1 
HETATM 13 C C19 A1ILU . . . D 2 -7.194 13.721 19.808 1 25.3 ? C19 A1ILU 201 B 1 
HETATM 14 C C20 A1ILU . . . D 2 -8.038 14.957 20.205 1 25.08 ? C20 A1ILU 201 B 1 
HETATM 15 C C21 A1ILU . . . D 2 -9.465 14.642 19.787 1 25.34 ? C21 A1ILU 201 B 1 
HETATM 16 C C22 A1ILU . . . D 2 -9.298 13.735 18.568 1 24.85 ? C22 A1ILU 201 B 1 
HETATM 17 N N23 A1ILU . . . D 2 -10.243 15.851 19.524 1 25.25 ? N23 A1ILU 201 B 1 
HETATM 18 C C24 A1ILU . . . D 2 -10.726 16.598 20.545 1 25.68 ? C24 A1ILU 201 B 1 
HETATM 19 N N26 A1ILU . . . D 2 -11.392 17.718 20.172 1 26.17 ? N26 A1ILU 201 B 1 
HETATM 20 C C27 A1ILU . . . D 2 -11.89 18.678 21.16 1 26.6 ? C27 A1ILU 201 B 1 
HETATM 21 C C31 A1ILU . . . D 2 -12.868 18.029 22.13 1 26.59 ? C31 A1ILU 201 B 1 
HETATM 22 C C32 A1ILU . . . D 2 -5.258 7.37 22.995 1 32.46 ? C32 A1ILU 201 B 1 
HETATM 23 C C34 A1ILU . . . D 2 -5.101 8.666 23.748 1 32.1 ? C34 A1ILU 201 B 1 
HETATM 24 C C35 A1ILU . . . D 2 -3.675 9.094 23.788 1 32 ? C35 A1ILU 201 B 1 
HETATM 25 C C4 A1ILU . . . D 2 -4.294 6.147 19.611 1 32.15 ? C4 A1ILU 201 B 1 
HETATM 26 C C5 A1ILU . . . D 2 -3.759 6.196 18.335 1 33.31 ? C5 A1ILU 201 B 1 
HETATM 27 C C6 A1ILU . . . D 2 -4.609 6.194 17.252 1 35.58 ? C6 A1ILU 201 B 1 
HETATM 28 CL CL9 A1ILU . . . D 2 -3.947 6.26 15.643 1 40.59 ? CL9 A1ILU 201 B 1 
HETATM 29 N N10 A1ILU . . . D 2 -6.095 7.337 21.917 1 31.2 ? N10 A1ILU 201 B 1 
HETATM 30 C C18 A1ILU . . . D 2 -8.177 12.817 19.045 1 24.69 ? C18 A1ILU 201 B 1 
HETATM 31 O O25 A1ILU . . . D 2 -10.599 16.259 21.721 1 25.5 ? O25 A1ILU 201 B 1 
HETATM 32 C C28 A1ILU . . . D 2 -12.804 19.744 20.528 1 27.06 ? C28 A1ILU 201 B 1 
HETATM 33 C C29 A1ILU . . . D 2 -14.137 19.044 20.335 1 27.12 ? C29 A1ILU 201 B 1 
HETATM 34 N N30 A1ILU . . . D 2 -14.086 17.883 21.275 1 26.91 ? N30 A1ILU 201 B 1 
HETATM 35 O O33 A1ILU . . . D 2 -4.584 6.4 23.308 1 33.82 ? O33 A1ILU 201 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           245 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           35 
#