data_9GIT # _model_server_result.job_id QoVEiR4dPUnA4frb9xvTow _model_server_result.datetime_utc '2025-06-23 13:54:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9git # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 9GIT # _exptl.entry_id 9GIT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 609.109 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3~{S})-3-[[4-[(1~{R},3~{R})-3-[[(3~{R})-1,1-bis(oxidanylidene)thiolan-3-yl]carbamoylamino]cyclopentyl]oxy-3-fluoranyl-phenyl]-propanoyl-amino]-3-(4-chlorophenyl)propanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.02 _cell.angle_gamma 90 _cell.entry_id 9GIT _cell.length_a 40.329 _cell.length_b 42.854 _cell.length_c 43.138 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9GIT _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 56 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 55 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C1 _struct_conn.ptnr2_label_comp_id A1ILW _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id A1ILW _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.809 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C28 H34 Cl F N4 O6 S' _chem_comp.formula_weight 609.109 _chem_comp.id A1ILW _chem_comp.mon_nstd_flag . _chem_comp.name (3~{S})-3-[[4-[(1~{R},3~{R})-3-[[(3~{R})-1,1-bis(oxidanylidene)thiolan-3-yl]carbamoylamino]cyclopentyl]oxy-3-fluoranyl-phenyl]-propanoyl-amino]-3-(4-chlorophenyl)propanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 A1ILW sing 1 n n C2 C3 A1ILW sing 2 n n C3 O4 A1ILW doub 3 n n C3 N5 A1ILW sing 4 n n N5 C6 A1ILW sing 5 n n C6 C7 A1ILW doub 6 n y C7 C8 A1ILW sing 7 n y C8 C9 A1ILW doub 8 n y C9 C10 A1ILW sing 9 n y C10 C11 A1ILW doub 10 n y C10 F12 A1ILW sing 11 n n C9 O13 A1ILW sing 12 n n O13 C14 A1ILW sing 13 n n C14 C15 A1ILW sing 14 n n C15 C16 A1ILW sing 15 n n C16 C17 A1ILW sing 16 n n C17 C18 A1ILW sing 17 n n C17 N19 A1ILW sing 18 n n N19 C20 A1ILW sing 19 n n C20 O21 A1ILW doub 20 n n C20 N22 A1ILW sing 21 n n N22 C23 A1ILW sing 22 n n C23 C24 A1ILW sing 23 n n C24 C25 A1ILW sing 24 n n C25 S26 A1ILW sing 25 n n S26 O27 A1ILW doub 26 n n S26 O28 A1ILW doub 27 n n S26 C29 A1ILW sing 28 n n N5 C30 A1ILW sing 29 n n C30 C31 A1ILW sing 30 n n C31 C32 A1ILW sing 31 n n C32 O33 A1ILW doub 32 n n C32 N34 A1ILW sing 33 n n C30 C35 A1ILW sing 34 n n C35 C36 A1ILW doub 35 n y C36 C37 A1ILW sing 36 n y C37 C38 A1ILW doub 37 n y C38 C39 A1ILW sing 38 n y C39 C40 A1ILW doub 39 n y C38 CL41 A1ILW sing 40 n n C11 C6 A1ILW sing 41 n y C18 C14 A1ILW sing 42 n n C29 C23 A1ILW sing 43 n n C40 C35 A1ILW sing 44 n y C1 H1B A1ILW sing 45 n n C1 H1A A1ILW sing 46 n n C1 H1C A1ILW sing 47 n n C2 H2A A1ILW sing 48 n n C2 H2B A1ILW sing 49 n n C7 H7 A1ILW sing 50 n n C8 H8 A1ILW sing 51 n n C11 H11 A1ILW sing 52 n n C14 H14 A1ILW sing 53 n n C15 H15B A1ILW sing 54 n n C15 H15A A1ILW sing 55 n n C16 H16B A1ILW sing 56 n n C16 H16A A1ILW sing 57 n n C24 H24B A1ILW sing 58 n n C24 H24A A1ILW sing 59 n n C30 H30 A1ILW sing 60 n n C31 H31A A1ILW sing 61 n n C31 H31B A1ILW sing 62 n n C17 H17 A1ILW sing 63 n n C18 H18B A1ILW sing 64 n n C18 H18A A1ILW sing 65 n n N19 H19 A1ILW sing 66 n n N22 H22 A1ILW sing 67 n n C23 H23 A1ILW sing 68 n n C25 H25B A1ILW sing 69 n n C25 H25A A1ILW sing 70 n n C29 H29B A1ILW sing 71 n n C29 H29A A1ILW sing 72 n n N34 H34A A1ILW sing 73 n n N34 H34B A1ILW sing 74 n n C36 H36 A1ILW sing 75 n n C37 H37 A1ILW sing 76 n n C39 H39 A1ILW sing 77 n n C40 H40 A1ILW sing 78 n n # _atom_sites.entry_id 9GIT _atom_sites.fract_transf_matrix[1][1] 0.024796 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004829 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023335 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023617 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1ILW A 1 201 1 A1ILW INH . C 3 HOH A 1 301 100 HOH HOH . C 3 HOH A 2 302 110 HOH HOH . C 3 HOH A 3 303 107 HOH HOH . C 3 HOH A 4 304 96 HOH HOH . C 3 HOH A 5 305 105 HOH HOH . C 3 HOH A 6 306 47 HOH HOH . C 3 HOH A 7 307 73 HOH HOH . C 3 HOH A 8 308 5 HOH HOH . C 3 HOH A 9 309 117 HOH HOH . C 3 HOH A 10 310 28 HOH HOH . C 3 HOH A 11 311 30 HOH HOH . C 3 HOH A 12 312 40 HOH HOH . C 3 HOH A 13 313 116 HOH HOH . C 3 HOH A 14 314 34 HOH HOH . C 3 HOH A 15 315 99 HOH HOH . C 3 HOH A 16 316 2 HOH HOH . C 3 HOH A 17 317 46 HOH HOH . C 3 HOH A 18 318 76 HOH HOH . C 3 HOH A 19 319 21 HOH HOH . C 3 HOH A 20 320 42 HOH HOH . C 3 HOH A 21 321 18 HOH HOH . C 3 HOH A 22 322 79 HOH HOH . C 3 HOH A 23 323 22 HOH HOH . C 3 HOH A 24 324 13 HOH HOH . C 3 HOH A 25 325 36 HOH HOH . C 3 HOH A 26 326 6 HOH HOH . C 3 HOH A 27 327 4 HOH HOH . C 3 HOH A 28 328 27 HOH HOH . C 3 HOH A 29 329 14 HOH HOH . C 3 HOH A 30 330 109 HOH HOH . C 3 HOH A 31 331 38 HOH HOH . C 3 HOH A 32 332 15 HOH HOH . C 3 HOH A 33 333 8 HOH HOH . C 3 HOH A 34 334 77 HOH HOH . C 3 HOH A 35 335 83 HOH HOH . C 3 HOH A 36 336 103 HOH HOH . C 3 HOH A 37 337 32 HOH HOH . C 3 HOH A 38 338 101 HOH HOH . C 3 HOH A 39 339 75 HOH HOH . C 3 HOH A 40 340 87 HOH HOH . C 3 HOH A 41 341 26 HOH HOH . C 3 HOH A 42 342 106 HOH HOH . C 3 HOH A 43 343 68 HOH HOH . C 3 HOH A 44 344 102 HOH HOH . C 3 HOH A 45 345 16 HOH HOH . C 3 HOH A 46 346 112 HOH HOH . C 3 HOH A 47 347 54 HOH HOH . C 3 HOH A 48 348 71 HOH HOH . C 3 HOH A 49 349 98 HOH HOH . C 3 HOH A 50 350 97 HOH HOH . C 3 HOH A 51 351 9 HOH HOH . C 3 HOH A 52 352 24 HOH HOH . C 3 HOH A 53 353 90 HOH HOH . C 3 HOH A 54 354 20 HOH HOH . C 3 HOH A 55 355 72 HOH HOH . C 3 HOH A 56 356 62 HOH HOH . C 3 HOH A 57 357 51 HOH HOH . C 3 HOH A 58 358 118 HOH HOH . C 3 HOH A 59 359 11 HOH HOH . C 3 HOH A 60 360 48 HOH HOH . C 3 HOH A 61 361 93 HOH HOH . C 3 HOH A 62 362 111 HOH HOH . C 3 HOH A 63 363 31 HOH HOH . C 3 HOH A 64 364 60 HOH HOH . C 3 HOH A 65 365 95 HOH HOH . C 3 HOH A 66 366 35 HOH HOH . C 3 HOH A 67 367 104 HOH HOH . C 3 HOH A 68 368 92 HOH HOH . C 3 HOH A 69 369 45 HOH HOH . C 3 HOH A 70 370 19 HOH HOH . C 3 HOH A 71 371 17 HOH HOH . C 3 HOH A 72 372 69 HOH HOH . C 3 HOH A 73 373 82 HOH HOH . C 3 HOH A 74 374 25 HOH HOH . C 3 HOH A 75 375 43 HOH HOH . C 3 HOH A 76 376 55 HOH HOH . C 3 HOH A 77 377 33 HOH HOH . C 3 HOH A 78 378 64 HOH HOH . C 3 HOH A 79 379 41 HOH HOH . C 3 HOH A 80 380 115 HOH HOH . C 3 HOH A 81 381 85 HOH HOH . C 3 HOH A 82 382 113 HOH HOH . C 3 HOH A 83 383 108 HOH HOH . C 3 HOH A 84 384 88 HOH HOH . C 3 HOH A 85 385 53 HOH HOH . C 3 HOH A 86 386 78 HOH HOH . C 3 HOH A 87 387 50 HOH HOH . C 3 HOH A 88 388 57 HOH HOH . C 3 HOH A 89 389 67 HOH HOH . C 3 HOH A 90 390 94 HOH HOH . C 3 HOH A 91 391 29 HOH HOH . C 3 HOH A 92 392 65 HOH HOH . C 3 HOH A 93 393 86 HOH HOH . C 3 HOH A 94 394 114 HOH HOH . C 3 HOH A 95 395 89 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 A1ILW . . . B 2 -2.682 -1.343 -2.655 1 19.78 ? C1 A1ILW 201 A 1 HETATM 2 C C2 A1ILW . . . B 2 -2.411 -1.109 -1.182 1 21.12 ? C2 A1ILW 201 A 1 HETATM 3 C C3 A1ILW . . . B 2 -2.613 0.329 -0.707 1 22.23 ? C3 A1ILW 201 A 1 HETATM 4 O O4 A1ILW . . . B 2 -3.472 1.043 -1.215 1 23.66 ? O4 A1ILW 201 A 1 HETATM 5 C C7 A1ILW . . . B 2 -1.064 -0.939 1.854 1 18.56 ? C7 A1ILW 201 A 1 HETATM 6 C C8 A1ILW . . . B 2 -0.055 -1.678 2.446 1 16.65 ? C8 A1ILW 201 A 1 HETATM 7 C C9 A1ILW . . . B 2 1.259 -1.515 2.034 1 15.15 ? C9 A1ILW 201 A 1 HETATM 8 C C10 A1ILW . . . B 2 1.529 -0.598 1.034 1 16.18 ? C10 A1ILW 201 A 1 HETATM 9 C C11 A1ILW . . . B 2 0.553 0.15 0.428 1 17.54 ? C11 A1ILW 201 A 1 HETATM 10 C C14 A1ILW . . . B 2 2.106 -3.231 3.532 1 14.3 ? C14 A1ILW 201 A 1 HETATM 11 C C15 A1ILW . . . B 2 3.503 -3.598 4.035 1 14.94 ? C15 A1ILW 201 A 1 HETATM 12 C C16 A1ILW . . . B 2 3.949 -4.684 3.052 1 16.1 ? C16 A1ILW 201 A 1 HETATM 13 C C20 A1ILW . . . B 2 3.033 -7.762 3.777 1 16.03 ? C20 A1ILW 201 A 1 HETATM 14 C C24 A1ILW . . . B 2 2.177 -10.761 5.759 1 17.95 ? C24 A1ILW 201 A 1 HETATM 15 O O28 A1ILW . . . B 2 5.049 -12.229 6.775 1 27.59 ? O28 A1ILW 201 A 1 HETATM 16 C C30 A1ILW . . . B 2 -1.969 2.17 0.793 1 23.09 ? C30 A1ILW 201 A 1 HETATM 17 C C31 A1ILW . . . B 2 -2.414 2.031 2.251 1 25.73 ? C31 A1ILW 201 A 1 HETATM 18 C C32 A1ILW . . . B 2 -2.822 3.328 2.907 1 27.16 ? C32 A1ILW 201 A 1 HETATM 19 C C35 A1ILW . . . B 2 -0.722 3.023 0.603 1 22.09 ? C35 A1ILW 201 A 1 HETATM 20 N N5 A1ILW . . . B 2 -1.788 0.8 0.277 1 21.51 ? N5 A1ILW 201 A 1 HETATM 21 C C6 A1ILW . . . B 2 -0.764 -0.016 0.846 1 19 ? C6 A1ILW 201 A 1 HETATM 22 F F12 A1ILW . . . B 2 2.809 -0.448 0.634 1 17.81 ? F12 A1ILW 201 A 1 HETATM 23 O O13 A1ILW . . . B 2 2.324 -2.203 2.524 1 15.27 ? O13 A1ILW 201 A 1 HETATM 24 C C17 A1ILW . . . B 2 2.683 -5.516 2.859 1 15.37 ? C17 A1ILW 201 A 1 HETATM 25 C C18 A1ILW . . . B 2 1.549 -4.498 2.867 1 15.13 ? C18 A1ILW 201 A 1 HETATM 26 N N19 A1ILW . . . B 2 2.548 -6.512 3.918 1 15.52 ? N19 A1ILW 201 A 1 HETATM 27 O O21 A1ILW . . . B 2 3.605 -8.147 2.755 1 16.86 ? O21 A1ILW 201 A 1 HETATM 28 N N22 A1ILW . . . B 2 2.84 -8.555 4.846 1 16.32 ? N22 A1ILW 201 A 1 HETATM 29 C C23 A1ILW . . . B 2 2.999 -10.003 4.733 1 18.09 ? C23 A1ILW 201 A 1 HETATM 30 C C25 A1ILW . . . B 2 2.891 -10.735 7.093 1 20.13 ? C25 A1ILW 201 A 1 HETATM 31 S S26 A1ILW . . . B 2 4.613 -10.866 6.662 1 24.12 ? S26 A1ILW 201 A 1 HETATM 32 O O27 A1ILW . . . B 2 5.361 -9.849 7.34 1 28.01 ? O27 A1ILW 201 A 1 HETATM 33 C C29 A1ILW . . . B 2 4.438 -10.436 4.943 1 20.67 ? C29 A1ILW 201 A 1 HETATM 34 O O33 A1ILW . . . B 2 -3.093 4.32 2.222 1 27.61 ? O33 A1ILW 201 A 1 HETATM 35 N N34 A1ILW . . . B 2 -2.894 3.321 4.229 1 27.99 ? N34 A1ILW 201 A 1 HETATM 36 C C36 A1ILW . . . B 2 0.16 3.254 1.655 1 21.97 ? C36 A1ILW 201 A 1 HETATM 37 C C37 A1ILW . . . B 2 1.374 3.885 1.448 1 22.68 ? C37 A1ILW 201 A 1 HETATM 38 C C38 A1ILW . . . B 2 1.707 4.296 0.18 1 24.2 ? C38 A1ILW 201 A 1 HETATM 39 C C39 A1ILW . . . B 2 0.855 4.096 -0.88 1 22.06 ? C39 A1ILW 201 A 1 HETATM 40 C C40 A1ILW . . . B 2 -0.359 3.464 -0.662 1 21.69 ? C40 A1ILW 201 A 1 HETATM 41 CL CL41 A1ILW . . . B 2 3.271 5.015 -0.101 1 29.79 ? CL41 A1ILW 201 A 1 # _model_server_stats.io_time_ms 110 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 41 #