data_9GJ0
#
_model_server_result.job_id            bHTTm7SD43WqNuSkbLblwg 
_model_server_result.datetime_utc      '2024-12-18 09:10:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9gj0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":600}' 
#
_entry.id    9GJ0 
#
_exptl.entry_id    9GJ0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            9GJ0 
_cell.length_a            109.77 
_cell.length_b            109.77 
_cell.length_c            244.985 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9GJ0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D 1 1,2 
B,C,E 2 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NE2 HIS 390 A HIS 390 1_555 D C8M FAD . A FAD 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.481 ? 
covale ? covale2 B NE2 HIS 390 B HIS 390 1_555 E C8M FAD . B FAD 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.487 ? 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     9GJ0 
_atom_sites.fract_transf_matrix[1][1]    0.00911 
_atom_sites.fract_transf_matrix[1][2]    0.00526 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010519 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004082 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 FAD A 1 600 600 FAD FAD . 
E 2 FAD B 1 600 600 FAD FAD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . D 2 0.313 -33.043 10.881 1 93.63 ? PA FAD 600 A 1 
HETATM 2 O O1A FAD . . . D 2 0.227 -33.939 12.059 1 90.26 ? O1A FAD 600 A 1 
HETATM 3 O O2A FAD . . . D 2 1.057 -33.69 9.773 1 85 ? O2A FAD 600 A 1 
HETATM 4 O O5B FAD . . . D 2 -1.133 -32.583 10.378 1 116.34 ? O5B FAD 600 A 1 
HETATM 5 C C5B FAD . . . D 2 -2.157 -32.283 11.364 1 126.65 ? C5B FAD 600 A 1 
HETATM 6 C C4B FAD . . . D 2 -3.487 -32.835 10.893 1 136.31 ? C4B FAD 600 A 1 
HETATM 7 O O4B FAD . . . D 2 -3.753 -32.434 9.524 1 133.25 ? O4B FAD 600 A 1 
HETATM 8 C C3B FAD . . . D 2 -3.598 -34.366 10.895 1 125.26 ? C3B FAD 600 A 1 
HETATM 9 O O3B FAD . . . D 2 -3.944 -34.842 12.193 1 94.04 ? O3B FAD 600 A 1 
HETATM 10 C C2B FAD . . . D 2 -4.663 -34.622 9.814 1 123 ? C2B FAD 600 A 1 
HETATM 11 O O2B FAD . . . D 2 -5.988 -34.551 10.308 1 108.86 ? O2B FAD 600 A 1 
HETATM 12 C C1B FAD . . . D 2 -4.358 -33.509 8.802 1 125.37 ? C1B FAD 600 A 1 
HETATM 13 N N9A FAD . . . D 2 -3.437 -33.976 7.762 1 125.65 ? N9A FAD 600 A 1 
HETATM 14 C C8A FAD . . . D 2 -2.065 -33.882 7.756 1 124.09 ? C8A FAD 600 A 1 
HETATM 15 N N7A FAD . . . D 2 -1.49 -34.413 6.704 1 106.01 ? N7A FAD 600 A 1 
HETATM 16 C C5A FAD . . . D 2 -2.558 -34.9 5.967 1 106.77 ? C5A FAD 600 A 1 
HETATM 17 C C6A FAD . . . D 2 -2.604 -35.575 4.734 1 85.43 ? C6A FAD 600 A 1 
HETATM 18 N N6A FAD . . . D 2 -1.513 -35.892 4.034 1 71.01 ? N6A FAD 600 A 1 
HETATM 19 N N1A FAD . . . D 2 -3.834 -35.902 4.254 1 71.69 ? N1A FAD 600 A 1 
HETATM 20 C C2A FAD . . . D 2 -4.913 -35.599 4.989 1 82.05 ? C2A FAD 600 A 1 
HETATM 21 N N3A FAD . . . D 2 -4.987 -34.969 6.158 1 95.27 ? N3A FAD 600 A 1 
HETATM 22 C C4A FAD . . . D 2 -3.762 -34.639 6.603 1 112.2 ? C4A FAD 600 A 1 
HETATM 23 N N1 FAD . . . D 2 0.182 -23.92 14.819 1 106.18 ? N1 FAD 600 A 1 
HETATM 24 C C2 FAD . . . D 2 -0.15 -22.821 14.069 1 99.41 ? C2 FAD 600 A 1 
HETATM 25 O O2 FAD . . . D 2 -0.789 -22.907 13.018 1 98.2 ? O2 FAD 600 A 1 
HETATM 26 N N3 FAD . . . D 2 0.266 -21.558 14.477 1 111.93 ? N3 FAD 600 A 1 
HETATM 27 C C4 FAD . . . D 2 0.976 -21.27 15.615 1 122.59 ? C4 FAD 600 A 1 
HETATM 28 O O4 FAD . . . D 2 1.279 -20.126 15.902 1 123.21 ? O4 FAD 600 A 1 
HETATM 29 C C4X FAD . . . D 2 1.29 -22.419 16.397 1 133.18 ? C4X FAD 600 A 1 
HETATM 30 N N5 FAD . . . D 2 1.952 -22.208 17.505 1 145.4 ? N5 FAD 600 A 1 
HETATM 31 C C5X FAD . . . D 2 2.248 -23.287 18.296 1 143.21 ? C5X FAD 600 A 1 
HETATM 32 C C6 FAD . . . D 2 2.941 -23.044 19.501 1 123.23 ? C6 FAD 600 A 1 
HETATM 33 C C7 FAD . . . D 2 3.26 -24.063 20.367 1 118.43 ? C7 FAD 600 A 1 
HETATM 34 C C7M FAD . . . D 2 3.996 -23.745 21.648 1 104.42 ? C7M FAD 600 A 1 
HETATM 35 C C8 FAD . . . D 2 2.92 -25.413 20.007 1 138.55 ? C8 FAD 600 A 1 
HETATM 36 C C8M FAD . . . D 2 3.259 -26.567 20.922 1 149.15 ? C8M FAD 600 A 1 
HETATM 37 C C9 FAD . . . D 2 2.251 -25.656 18.82 1 130.82 ? C9 FAD 600 A 1 
HETATM 38 C C9A FAD . . . D 2 1.894 -24.612 17.944 1 142.36 ? C9A FAD 600 A 1 
HETATM 39 N N10 FAD . . . D 2 1.213 -24.82 16.737 1 132.26 ? N10 FAD 600 A 1 
HETATM 40 C C10 FAD . . . D 2 0.863 -23.725 15.934 1 125.56 ? C10 FAD 600 A 1 
HETATM 41 C C1' FAD . . . D 2 0.809 -26.193 16.336 1 125.47 ? C1' FAD 600 A 1 
HETATM 42 C C2' FAD . . . D 2 1.732 -27.045 15.429 1 125.17 ? C2' FAD 600 A 1 
HETATM 43 O O2' FAD . . . D 2 3.108 -27.234 15.847 1 96.75 ? O2' FAD 600 A 1 
HETATM 44 C C3' FAD . . . D 2 1.584 -26.534 13.978 1 122.59 ? C3' FAD 600 A 1 
HETATM 45 O O3' FAD . . . D 2 0.203 -26.367 13.642 1 92.81 ? O3' FAD 600 A 1 
HETATM 46 C C4' FAD . . . D 2 2.112 -27.42 12.848 1 114.66 ? C4' FAD 600 A 1 
HETATM 47 O O4' FAD . . . D 2 2.247 -26.694 11.62 1 98.23 ? O4' FAD 600 A 1 
HETATM 48 C C5' FAD . . . D 2 1.164 -28.594 12.648 1 102.04 ? C5' FAD 600 A 1 
HETATM 49 O O5' FAD . . . D 2 1.912 -29.828 12.749 1 100.99 ? O5' FAD 600 A 1 
HETATM 50 P P FAD . . . D 2 2.21 -30.698 11.441 1 111.68 ? P FAD 600 A 1 
HETATM 51 O O1P FAD . . . D 2 3.293 -31.636 11.838 1 100.63 ? O1P FAD 600 A 1 
HETATM 52 O O2P FAD . . . D 2 2.454 -29.691 10.373 1 96.79 ? O2P FAD 600 A 1 
HETATM 53 O O3P FAD . . . D 2 0.828 -31.53 11.185 1 108.09 ? O3P FAD 600 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           228 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           53 
#