data_9GKZ
#
_model_server_result.job_id            wo78d8tU8xh6woyUOWOCfQ 
_model_server_result.datetime_utc      '2024-11-14 23:31:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9gkz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":402}' 
#
_entry.id    9GKZ 
#
_exptl.entry_id    9GKZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              106.12 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DI(HYDROXYETHYL)ETHER 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9GKZ 
_cell.length_a            147.342 
_cell.length_b            48.858 
_cell.length_c            82.249 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9GKZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      7 
_struct_asym.id                             J 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O PRO 167 A PRO 156 1_555 E K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.969 ? 
metalc ? metalc2 A O LEU 182 A LEU 171 1_555 E K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.426 ? 
metalc ? metalc3 A O ASP 204 A ASP 193 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.775 ? 
metalc ? metalc4 A OD1 ASP 204 A ASP 193 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? 
metalc ? metalc5 A O ASP 206 A ASP 195 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? 
metalc ? metalc6 A OD1 ASP 206 A ASP 195 1_555 G ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? 
metalc ? metalc7 A O HIS 208 A HIS 197 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.769 ? 
metalc ? metalc8 A ND1 HIS 208 A HIS 197 1_555 G ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? 
metalc ? metalc9 A O PHE 217 A PHE 206 1_555 F K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? 
metalc ? metalc10 A O ARG 220 A ARG 209 1_555 F K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.843 ? 
metalc ? metalc11 A O VAL 223 A VAL 212 1_555 F K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? 
metalc ? metalc12 A OG SER 227 A SER 216 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.853 ? 
metalc ? metalc13 A O ILE 228 A ILE 217 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.746 ? 
metalc ? metalc14 A O PHE 254 A PHE 243 1_555 F K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.083 ? 
metalc ? metalc15 A OD2 ASP 295 A ASP 284 1_555 G ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? 
metalc ? metalc16 E K K . A K 403 1_555 O O HOH . A HOH 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.081 ? 
metalc ? metalc17 F K K . A K 404 1_555 O O HOH . A HOH 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.791 ? 
metalc ? metalc18 F K K . A K 404 1_555 O O HOH . A HOH 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.351 ? 
metalc ? metalc19 B O ASP 204 B ASP 193 1_555 K K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? 
metalc ? metalc20 B OD1 ASP 204 B ASP 193 1_555 K K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? 
metalc ? metalc21 B OD2 ASP 204 B ASP 193 1_555 M K K . B K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.714 ? 
metalc ? metalc22 B O ASP 206 B ASP 195 1_555 K K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.669 ? 
metalc ? metalc23 B OD2 ASP 206 B ASP 195 1_555 N ZN ZN . B ZN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? 
metalc ? metalc24 B O HIS 208 B HIS 197 1_555 K K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.743 ? 
metalc ? metalc25 B ND1 HIS 208 B HIS 197 1_555 N ZN ZN . B ZN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? 
metalc ? metalc26 B OG1 THR 213 B THR 202 1_555 M K K . B K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.018 ? 
metalc ? metalc27 B O PHE 217 B PHE 206 1_555 L K K . B K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? 
metalc ? metalc28 B O ARG 220 B ARG 209 1_555 L K K . B K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.76 ? 
metalc ? metalc29 B O VAL 223 B VAL 212 1_555 L K K . B K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.79 ? 
metalc ? metalc30 B OG SER 227 B SER 216 1_555 K K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.744 ? 
metalc ? metalc31 B O ILE 228 B ILE 217 1_555 K K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.817 ? 
metalc ? metalc32 B O PHE 254 B PHE 243 1_555 L K K . B K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.148 ? 
metalc ? metalc33 B OG SER 291 B SER 280 1_555 M K K . B K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.018 ? 
metalc ? metalc34 B OD2 ASP 295 B ASP 284 1_555 N ZN ZN . B ZN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? 
metalc ? metalc35 I O ACT . B ACT 401 1_555 N ZN ZN . B ZN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? 
metalc ? metalc36 L K K . B K 404 1_555 P O HOH . B HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.203 ? 
metalc ? metalc37 L K K . B K 404 1_555 P O HOH . B HOH 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? 
#
_chem_comp.formula           'C4 H10 O3' 
_chem_comp.formula_weight    106.12 
_chem_comp.id                PEG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DI(HYDROXYETHYL)ETHER 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PEG sing 243 n n 
C1 C2 PEG sing 244 n n 
C1 H11 PEG sing 245 n n 
C1 H12 PEG sing 246 n n 
O1 HO1 PEG sing 247 n n 
C2 O2 PEG sing 248 n n 
C2 H21 PEG sing 249 n n 
C2 H22 PEG sing 250 n n 
O2 C3 PEG sing 251 n n 
C3 C4 PEG sing 252 n n 
C3 H31 PEG sing 253 n n 
C3 H32 PEG sing 254 n n 
C4 O4 PEG sing 255 n n 
C4 H41 PEG sing 256 n n 
C4 H42 PEG sing 257 n n 
O4 HO4 PEG sing 258 n n 
#
_atom_sites.entry_id                     9GKZ 
_atom_sites.fract_transf_matrix[1][1]    0.006787 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020467 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012158 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PGE A 1 401 402 PGE PGE . 
D 3 K A 1 402 1 K K . 
E 3 K A 1 403 4 K K . 
F 3 K A 1 404 6 K K . 
G 4 ZN A 1 405 1 ZN ZN . 
H 5 CL A 1 406 1 CL CL . 
I 6 ACT B 1 401 401 ACT ACT . 
J 7 PEG B 1 402 402 PEG PEG . 
K 3 K B 1 403 2 K K . 
L 3 K B 1 404 3 K K . 
M 3 K B 1 405 5 K K . 
N 4 ZN B 1 406 2 ZN ZN . 
O 8 HOH A 1 501 56 HOH HOH . 
O 8 HOH A 2 502 84 HOH HOH . 
O 8 HOH A 3 503 68 HOH HOH . 
O 8 HOH A 4 504 19 HOH HOH . 
O 8 HOH A 5 505 21 HOH HOH . 
O 8 HOH A 6 506 20 HOH HOH . 
O 8 HOH A 7 507 135 HOH HOH . 
O 8 HOH A 8 508 60 HOH HOH . 
O 8 HOH A 9 509 78 HOH HOH . 
O 8 HOH A 10 510 130 HOH HOH . 
O 8 HOH A 11 511 89 HOH HOH . 
O 8 HOH A 12 512 103 HOH HOH . 
O 8 HOH A 13 513 137 HOH HOH . 
O 8 HOH A 14 514 8 HOH HOH . 
O 8 HOH A 15 515 146 HOH HOH . 
O 8 HOH A 16 516 3 HOH HOH . 
O 8 HOH A 17 517 113 HOH HOH . 
O 8 HOH A 18 518 55 HOH HOH . 
O 8 HOH A 19 519 46 HOH HOH . 
O 8 HOH A 20 520 93 HOH HOH . 
O 8 HOH A 21 521 58 HOH HOH . 
O 8 HOH A 22 522 116 HOH HOH . 
O 8 HOH A 23 523 140 HOH HOH . 
O 8 HOH A 24 524 131 HOH HOH . 
O 8 HOH A 25 525 152 HOH HOH . 
O 8 HOH A 26 526 16 HOH HOH . 
O 8 HOH A 27 527 133 HOH HOH . 
O 8 HOH A 28 528 4 HOH HOH . 
O 8 HOH A 29 529 155 HOH HOH . 
O 8 HOH A 30 530 95 HOH HOH . 
O 8 HOH A 31 531 96 HOH HOH . 
O 8 HOH A 32 532 75 HOH HOH . 
O 8 HOH A 33 533 90 HOH HOH . 
O 8 HOH A 34 534 12 HOH HOH . 
O 8 HOH A 35 535 91 HOH HOH . 
O 8 HOH A 36 536 66 HOH HOH . 
O 8 HOH A 37 537 123 HOH HOH . 
O 8 HOH A 38 538 101 HOH HOH . 
O 8 HOH A 39 539 37 HOH HOH . 
O 8 HOH A 40 540 138 HOH HOH . 
O 8 HOH A 41 541 71 HOH HOH . 
O 8 HOH A 42 542 11 HOH HOH . 
O 8 HOH A 43 543 49 HOH HOH . 
O 8 HOH A 44 544 13 HOH HOH . 
O 8 HOH A 45 545 45 HOH HOH . 
O 8 HOH A 46 546 29 HOH HOH . 
O 8 HOH A 47 547 119 HOH HOH . 
O 8 HOH A 48 548 72 HOH HOH . 
O 8 HOH A 49 549 107 HOH HOH . 
O 8 HOH A 50 550 105 HOH HOH . 
O 8 HOH A 51 551 83 HOH HOH . 
O 8 HOH A 52 552 10 HOH HOH . 
O 8 HOH A 53 553 28 HOH HOH . 
O 8 HOH A 54 554 154 HOH HOH . 
O 8 HOH A 55 555 156 HOH HOH . 
O 8 HOH A 56 556 87 HOH HOH . 
O 8 HOH A 57 557 24 HOH HOH . 
O 8 HOH A 58 558 23 HOH HOH . 
O 8 HOH A 59 559 147 HOH HOH . 
O 8 HOH A 60 560 139 HOH HOH . 
O 8 HOH A 61 561 145 HOH HOH . 
O 8 HOH A 62 562 124 HOH HOH . 
O 8 HOH A 63 563 141 HOH HOH . 
O 8 HOH A 64 564 115 HOH HOH . 
O 8 HOH A 65 565 142 HOH HOH . 
P 8 HOH B 1 501 150 HOH HOH . 
P 8 HOH B 2 502 134 HOH HOH . 
P 8 HOH B 3 503 76 HOH HOH . 
P 8 HOH B 4 504 102 HOH HOH . 
P 8 HOH B 5 505 151 HOH HOH . 
P 8 HOH B 6 506 148 HOH HOH . 
P 8 HOH B 7 507 52 HOH HOH . 
P 8 HOH B 8 508 99 HOH HOH . 
P 8 HOH B 9 509 9 HOH HOH . 
P 8 HOH B 10 510 31 HOH HOH . 
P 8 HOH B 11 511 120 HOH HOH . 
P 8 HOH B 12 512 127 HOH HOH . 
P 8 HOH B 13 513 92 HOH HOH . 
P 8 HOH B 14 514 50 HOH HOH . 
P 8 HOH B 15 515 7 HOH HOH . 
P 8 HOH B 16 516 77 HOH HOH . 
P 8 HOH B 17 517 112 HOH HOH . 
P 8 HOH B 18 518 117 HOH HOH . 
P 8 HOH B 19 519 6 HOH HOH . 
P 8 HOH B 20 520 36 HOH HOH . 
P 8 HOH B 21 521 48 HOH HOH . 
P 8 HOH B 22 522 100 HOH HOH . 
P 8 HOH B 23 523 108 HOH HOH . 
P 8 HOH B 24 524 54 HOH HOH . 
P 8 HOH B 25 525 2 HOH HOH . 
P 8 HOH B 26 526 51 HOH HOH . 
P 8 HOH B 27 527 53 HOH HOH . 
P 8 HOH B 28 528 159 HOH HOH . 
P 8 HOH B 29 529 44 HOH HOH . 
P 8 HOH B 30 530 34 HOH HOH . 
P 8 HOH B 31 531 65 HOH HOH . 
P 8 HOH B 32 532 104 HOH HOH . 
P 8 HOH B 33 533 47 HOH HOH . 
P 8 HOH B 34 534 111 HOH HOH . 
P 8 HOH B 35 535 149 HOH HOH . 
P 8 HOH B 36 536 97 HOH HOH . 
P 8 HOH B 37 537 5 HOH HOH . 
P 8 HOH B 38 538 15 HOH HOH . 
P 8 HOH B 39 539 110 HOH HOH . 
P 8 HOH B 40 540 74 HOH HOH . 
P 8 HOH B 41 541 157 HOH HOH . 
P 8 HOH B 42 542 57 HOH HOH . 
P 8 HOH B 43 543 17 HOH HOH . 
P 8 HOH B 44 544 25 HOH HOH . 
P 8 HOH B 45 545 59 HOH HOH . 
P 8 HOH B 46 546 73 HOH HOH . 
P 8 HOH B 47 547 158 HOH HOH . 
P 8 HOH B 48 548 88 HOH HOH . 
P 8 HOH B 49 549 106 HOH HOH . 
P 8 HOH B 50 550 30 HOH HOH . 
P 8 HOH B 51 551 26 HOH HOH . 
P 8 HOH B 52 552 62 HOH HOH . 
P 8 HOH B 53 553 125 HOH HOH . 
P 8 HOH B 54 554 136 HOH HOH . 
P 8 HOH B 55 555 132 HOH HOH . 
P 8 HOH B 56 556 94 HOH HOH . 
P 8 HOH B 57 557 69 HOH HOH . 
P 8 HOH B 58 558 38 HOH HOH . 
P 8 HOH B 59 559 82 HOH HOH . 
P 8 HOH B 60 560 126 HOH HOH . 
P 8 HOH B 61 561 153 HOH HOH . 
P 8 HOH B 62 562 143 HOH HOH . 
P 8 HOH B 63 563 128 HOH HOH . 
P 8 HOH B 64 564 144 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PEG . . . J 7 -33.313 -6.889 -22.472 1 49.21 ? C1 PEG 402 B 1 
HETATM 2 O O1 PEG . . . J 7 -32.876 -8.131 -23.01 1 47.3 ? O1 PEG 402 B 1 
HETATM 3 C C2 PEG . . . J 7 -32.203 -5.873 -22.448 1 48.39 ? C2 PEG 402 B 1 
HETATM 4 O O2 PEG . . . J 7 -32.584 -4.758 -21.645 1 59.05 ? O2 PEG 402 B 1 
HETATM 5 C C3 PEG . . . J 7 -31.891 -4.691 -20.403 1 44.75 ? C3 PEG 402 B 1 
HETATM 6 C C4 PEG . . . J 7 -32.818 -5.078 -19.293 1 46.73 ? C4 PEG 402 B 1 
HETATM 7 O O4 PEG . . . J 7 -32.199 -4.9 -18.032 1 44.26 ? O4 PEG 402 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           7 
#