data_9GKZ # _model_server_result.job_id O2FJlvDwKB0bzZarxzwGew _model_server_result.datetime_utc '2024-11-23 14:45:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9gkz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":404}' # _entry.id 9GKZ # _exptl.entry_id 9GKZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 39.098 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'POTASSIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9GKZ _cell.length_a 147.342 _cell.length_b 48.858 _cell.length_c 82.249 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9GKZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 K N N ? 3 L N N ? 3 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O PRO 167 A PRO 156 1_555 E K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.969 ? metalc ? metalc2 A O LEU 182 A LEU 171 1_555 E K K . A K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.426 ? metalc ? metalc3 A O ASP 204 A ASP 193 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.775 ? metalc ? metalc4 A OD1 ASP 204 A ASP 193 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? metalc ? metalc5 A O ASP 206 A ASP 195 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? metalc ? metalc6 A OD1 ASP 206 A ASP 195 1_555 G ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc7 A O HIS 208 A HIS 197 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.769 ? metalc ? metalc8 A ND1 HIS 208 A HIS 197 1_555 G ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc9 A O PHE 217 A PHE 206 1_555 F K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc10 A O ARG 220 A ARG 209 1_555 F K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.843 ? metalc ? metalc11 A O VAL 223 A VAL 212 1_555 F K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? metalc ? metalc12 A OG SER 227 A SER 216 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.853 ? metalc ? metalc13 A O ILE 228 A ILE 217 1_555 D K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.746 ? metalc ? metalc14 A O PHE 254 A PHE 243 1_555 F K K . A K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.083 ? metalc ? metalc15 A OD2 ASP 295 A ASP 284 1_555 G ZN ZN . A ZN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc16 E K K . A K 403 1_555 O O HOH . A HOH 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.081 ? metalc ? metalc17 F K K . A K 404 1_555 O O HOH . A HOH 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.791 ? metalc ? metalc18 F K K . A K 404 1_555 O O HOH . A HOH 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.351 ? metalc ? metalc19 B O ASP 204 B ASP 193 1_555 K K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? metalc ? metalc20 B OD1 ASP 204 B ASP 193 1_555 K K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? metalc ? metalc21 B OD2 ASP 204 B ASP 193 1_555 M K K . B K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.714 ? metalc ? metalc22 B O ASP 206 B ASP 195 1_555 K K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.669 ? metalc ? metalc23 B OD2 ASP 206 B ASP 195 1_555 N ZN ZN . B ZN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? metalc ? metalc24 B O HIS 208 B HIS 197 1_555 K K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.743 ? metalc ? metalc25 B ND1 HIS 208 B HIS 197 1_555 N ZN ZN . B ZN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc26 B OG1 THR 213 B THR 202 1_555 M K K . B K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.018 ? metalc ? metalc27 B O PHE 217 B PHE 206 1_555 L K K . B K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc28 B O ARG 220 B ARG 209 1_555 L K K . B K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.76 ? metalc ? metalc29 B O VAL 223 B VAL 212 1_555 L K K . B K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.79 ? metalc ? metalc30 B OG SER 227 B SER 216 1_555 K K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.744 ? metalc ? metalc31 B O ILE 228 B ILE 217 1_555 K K K . B K 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.817 ? metalc ? metalc32 B O PHE 254 B PHE 243 1_555 L K K . B K 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.148 ? metalc ? metalc33 B OG SER 291 B SER 280 1_555 M K K . B K 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.018 ? metalc ? metalc34 B OD2 ASP 295 B ASP 284 1_555 N ZN ZN . B ZN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc35 I O ACT . B ACT 401 1_555 N ZN ZN . B ZN 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc36 L K K . B K 404 1_555 P O HOH . B HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.203 ? metalc ? metalc37 L K K . B K 404 1_555 P O HOH . B HOH 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? # _chem_comp.formula 'K 1' _chem_comp.formula_weight 39.098 _chem_comp.id K _chem_comp.mon_nstd_flag . _chem_comp.name 'POTASSIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 9GKZ _atom_sites.fract_transf_matrix[1][1] 0.006787 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020467 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012158 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PGE A 1 401 402 PGE PGE . D 3 K A 1 402 1 K K . E 3 K A 1 403 4 K K . F 3 K A 1 404 6 K K . G 4 ZN A 1 405 1 ZN ZN . H 5 CL A 1 406 1 CL CL . I 6 ACT B 1 401 401 ACT ACT . J 7 PEG B 1 402 402 PEG PEG . K 3 K B 1 403 2 K K . L 3 K B 1 404 3 K K . M 3 K B 1 405 5 K K . N 4 ZN B 1 406 2 ZN ZN . O 8 HOH A 1 501 56 HOH HOH . O 8 HOH A 2 502 84 HOH HOH . O 8 HOH A 3 503 68 HOH HOH . O 8 HOH A 4 504 19 HOH HOH . O 8 HOH A 5 505 21 HOH HOH . O 8 HOH A 6 506 20 HOH HOH . O 8 HOH A 7 507 135 HOH HOH . O 8 HOH A 8 508 60 HOH HOH . O 8 HOH A 9 509 78 HOH HOH . O 8 HOH A 10 510 130 HOH HOH . O 8 HOH A 11 511 89 HOH HOH . O 8 HOH A 12 512 103 HOH HOH . O 8 HOH A 13 513 137 HOH HOH . O 8 HOH A 14 514 8 HOH HOH . O 8 HOH A 15 515 146 HOH HOH . O 8 HOH A 16 516 3 HOH HOH . O 8 HOH A 17 517 113 HOH HOH . O 8 HOH A 18 518 55 HOH HOH . O 8 HOH A 19 519 46 HOH HOH . O 8 HOH A 20 520 93 HOH HOH . O 8 HOH A 21 521 58 HOH HOH . O 8 HOH A 22 522 116 HOH HOH . O 8 HOH A 23 523 140 HOH HOH . O 8 HOH A 24 524 131 HOH HOH . O 8 HOH A 25 525 152 HOH HOH . O 8 HOH A 26 526 16 HOH HOH . O 8 HOH A 27 527 133 HOH HOH . O 8 HOH A 28 528 4 HOH HOH . O 8 HOH A 29 529 155 HOH HOH . O 8 HOH A 30 530 95 HOH HOH . O 8 HOH A 31 531 96 HOH HOH . O 8 HOH A 32 532 75 HOH HOH . O 8 HOH A 33 533 90 HOH HOH . O 8 HOH A 34 534 12 HOH HOH . O 8 HOH A 35 535 91 HOH HOH . O 8 HOH A 36 536 66 HOH HOH . O 8 HOH A 37 537 123 HOH HOH . O 8 HOH A 38 538 101 HOH HOH . O 8 HOH A 39 539 37 HOH HOH . O 8 HOH A 40 540 138 HOH HOH . O 8 HOH A 41 541 71 HOH HOH . O 8 HOH A 42 542 11 HOH HOH . O 8 HOH A 43 543 49 HOH HOH . O 8 HOH A 44 544 13 HOH HOH . O 8 HOH A 45 545 45 HOH HOH . O 8 HOH A 46 546 29 HOH HOH . O 8 HOH A 47 547 119 HOH HOH . O 8 HOH A 48 548 72 HOH HOH . O 8 HOH A 49 549 107 HOH HOH . O 8 HOH A 50 550 105 HOH HOH . O 8 HOH A 51 551 83 HOH HOH . O 8 HOH A 52 552 10 HOH HOH . O 8 HOH A 53 553 28 HOH HOH . O 8 HOH A 54 554 154 HOH HOH . O 8 HOH A 55 555 156 HOH HOH . O 8 HOH A 56 556 87 HOH HOH . O 8 HOH A 57 557 24 HOH HOH . O 8 HOH A 58 558 23 HOH HOH . O 8 HOH A 59 559 147 HOH HOH . O 8 HOH A 60 560 139 HOH HOH . O 8 HOH A 61 561 145 HOH HOH . O 8 HOH A 62 562 124 HOH HOH . O 8 HOH A 63 563 141 HOH HOH . O 8 HOH A 64 564 115 HOH HOH . O 8 HOH A 65 565 142 HOH HOH . P 8 HOH B 1 501 150 HOH HOH . P 8 HOH B 2 502 134 HOH HOH . P 8 HOH B 3 503 76 HOH HOH . P 8 HOH B 4 504 102 HOH HOH . P 8 HOH B 5 505 151 HOH HOH . P 8 HOH B 6 506 148 HOH HOH . P 8 HOH B 7 507 52 HOH HOH . P 8 HOH B 8 508 99 HOH HOH . P 8 HOH B 9 509 9 HOH HOH . P 8 HOH B 10 510 31 HOH HOH . P 8 HOH B 11 511 120 HOH HOH . P 8 HOH B 12 512 127 HOH HOH . P 8 HOH B 13 513 92 HOH HOH . P 8 HOH B 14 514 50 HOH HOH . P 8 HOH B 15 515 7 HOH HOH . P 8 HOH B 16 516 77 HOH HOH . P 8 HOH B 17 517 112 HOH HOH . P 8 HOH B 18 518 117 HOH HOH . P 8 HOH B 19 519 6 HOH HOH . P 8 HOH B 20 520 36 HOH HOH . P 8 HOH B 21 521 48 HOH HOH . P 8 HOH B 22 522 100 HOH HOH . P 8 HOH B 23 523 108 HOH HOH . P 8 HOH B 24 524 54 HOH HOH . P 8 HOH B 25 525 2 HOH HOH . P 8 HOH B 26 526 51 HOH HOH . P 8 HOH B 27 527 53 HOH HOH . P 8 HOH B 28 528 159 HOH HOH . P 8 HOH B 29 529 44 HOH HOH . P 8 HOH B 30 530 34 HOH HOH . P 8 HOH B 31 531 65 HOH HOH . P 8 HOH B 32 532 104 HOH HOH . P 8 HOH B 33 533 47 HOH HOH . P 8 HOH B 34 534 111 HOH HOH . P 8 HOH B 35 535 149 HOH HOH . P 8 HOH B 36 536 97 HOH HOH . P 8 HOH B 37 537 5 HOH HOH . P 8 HOH B 38 538 15 HOH HOH . P 8 HOH B 39 539 110 HOH HOH . P 8 HOH B 40 540 74 HOH HOH . P 8 HOH B 41 541 157 HOH HOH . P 8 HOH B 42 542 57 HOH HOH . P 8 HOH B 43 543 17 HOH HOH . P 8 HOH B 44 544 25 HOH HOH . P 8 HOH B 45 545 59 HOH HOH . P 8 HOH B 46 546 73 HOH HOH . P 8 HOH B 47 547 158 HOH HOH . P 8 HOH B 48 548 88 HOH HOH . P 8 HOH B 49 549 106 HOH HOH . P 8 HOH B 50 550 30 HOH HOH . P 8 HOH B 51 551 26 HOH HOH . P 8 HOH B 52 552 62 HOH HOH . P 8 HOH B 53 553 125 HOH HOH . P 8 HOH B 54 554 136 HOH HOH . P 8 HOH B 55 555 132 HOH HOH . P 8 HOH B 56 556 94 HOH HOH . P 8 HOH B 57 557 69 HOH HOH . P 8 HOH B 58 558 38 HOH HOH . P 8 HOH B 59 559 82 HOH HOH . P 8 HOH B 60 560 126 HOH HOH . P 8 HOH B 61 561 153 HOH HOH . P 8 HOH B 62 562 143 HOH HOH . P 8 HOH B 63 563 128 HOH HOH . P 8 HOH B 64 564 144 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol K _atom_site.label_atom_id K _atom_site.label_comp_id K _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x -35.534 _atom_site.Cartn_y 1.656 _atom_site.Cartn_z -31.049 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 36.73 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id K _atom_site.auth_comp_id K _atom_site.auth_seq_id 404 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 1 #