data_9GL5
#
_model_server_result.job_id            gQEvxeeboPuBz8K-67nI4A 
_model_server_result.datetime_utc      '2025-07-09 16:36:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9gl5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":405}' 
#
_entry.id    9GL5 
#
_exptl.entry_id    9GL5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              60.052 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ACETIC ACID' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            9GL5 
_cell.length_a            107.966 
_cell.length_b            107.966 
_cell.length_c            86.366 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9GL5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    'R 3' 
_symmetry.space_group_name_H-M     'H 3' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,O 1 1 
B,H,I,J,K,L,M,N,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 G N N 
? 4 M N N 
? 4 N N N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            G 
_struct_conn.ptnr1_label_atom_id            CH3 
_struct_conn.ptnr1_label_comp_id            ACY 
_struct_conn.ptnr1_label_seq_id             . 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             ACY 
_struct_conn.ptnr1_auth_seq_id              405 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            N 
_struct_conn.ptnr2_label_atom_id            O 
_struct_conn.ptnr2_label_comp_id            ACY 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             B 
_struct_conn.ptnr2_auth_comp_id             ACY 
_struct_conn.ptnr2_auth_seq_id              407 
_struct_conn.ptnr2_symmetry                 8_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.375 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C2 H4 O2' 
_chem_comp.formula_weight    60.052 
_chem_comp.id                ACY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ACETIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O ACY doub 1 n n 
C OXT ACY sing 2 n n 
C CH3 ACY sing 3 n n 
OXT HXT ACY sing 4 n n 
CH3 H1 ACY sing 5 n n 
CH3 H2 ACY sing 6 n n 
CH3 H3 ACY sing 7 n n 
#
_atom_sites.entry_id                     9GL5 
_atom_sites.fract_transf_matrix[1][1]    0.009262 
_atom_sites.fract_transf_matrix[1][2]    0.005348 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010695 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011579 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 C2E A 1 401 150 C2E C2E . 
D 3 SO4 A 1 402 4 SO4 SO4 . 
E 3 SO4 A 1 403 6 SO4 SO4 . 
F 4 ACY A 1 404 2 ACY ACT . 
G 4 ACY A 1 405 4 ACY ACT . 
H 2 C2E B 1 401 150 C2E C2E . 
I 3 SO4 B 1 402 1 SO4 SO4 . 
J 3 SO4 B 1 403 2 SO4 SO4 . 
K 3 SO4 B 1 404 3 SO4 SO4 . 
L 3 SO4 B 1 405 5 SO4 SO4 . 
M 4 ACY B 1 406 1 ACY ACT . 
N 4 ACY B 1 407 3 ACY ACT . 
O 5 HOH A 1 501 23 HOH HOH . 
O 5 HOH A 2 502 69 HOH HOH . 
O 5 HOH A 3 503 6 HOH HOH . 
O 5 HOH A 4 504 15 HOH HOH . 
O 5 HOH A 5 505 18 HOH HOH . 
O 5 HOH A 6 506 16 HOH HOH . 
O 5 HOH A 7 507 59 HOH HOH . 
O 5 HOH A 8 508 82 HOH HOH . 
O 5 HOH A 9 509 5 HOH HOH . 
O 5 HOH A 10 510 99 HOH HOH . 
O 5 HOH A 11 511 44 HOH HOH . 
O 5 HOH A 12 512 89 HOH HOH . 
O 5 HOH A 13 513 2 HOH HOH . 
O 5 HOH A 14 514 11 HOH HOH . 
O 5 HOH A 15 515 29 HOH HOH . 
O 5 HOH A 16 516 85 HOH HOH . 
O 5 HOH A 17 517 81 HOH HOH . 
O 5 HOH A 18 518 80 HOH HOH . 
O 5 HOH A 19 519 71 HOH HOH . 
O 5 HOH A 20 520 10 HOH HOH . 
O 5 HOH A 21 521 1 HOH HOH . 
O 5 HOH A 22 522 57 HOH HOH . 
O 5 HOH A 23 523 28 HOH HOH . 
O 5 HOH A 24 524 45 HOH HOH . 
O 5 HOH A 25 525 3 HOH HOH . 
O 5 HOH A 26 526 88 HOH HOH . 
O 5 HOH A 27 527 8 HOH HOH . 
O 5 HOH A 28 528 56 HOH HOH . 
O 5 HOH A 29 529 54 HOH HOH . 
O 5 HOH A 30 530 96 HOH HOH . 
O 5 HOH A 31 531 36 HOH HOH . 
O 5 HOH A 32 532 97 HOH HOH . 
O 5 HOH A 33 533 94 HOH HOH . 
O 5 HOH A 34 534 114 HOH HOH . 
O 5 HOH A 35 535 53 HOH HOH . 
O 5 HOH A 36 536 79 HOH HOH . 
O 5 HOH A 37 537 52 HOH HOH . 
O 5 HOH A 38 538 78 HOH HOH . 
O 5 HOH A 39 539 50 HOH HOH . 
O 5 HOH A 40 540 95 HOH HOH . 
O 5 HOH A 41 541 49 HOH HOH . 
O 5 HOH A 42 542 37 HOH HOH . 
O 5 HOH A 43 543 75 HOH HOH . 
O 5 HOH A 44 544 101 HOH HOH . 
O 5 HOH A 45 545 102 HOH HOH . 
O 5 HOH A 46 546 112 HOH HOH . 
O 5 HOH A 47 547 119 HOH HOH . 
O 5 HOH A 48 548 72 HOH HOH . 
O 5 HOH A 49 549 113 HOH HOH . 
O 5 HOH A 50 550 46 HOH HOH . 
O 5 HOH A 51 551 111 HOH HOH . 
O 5 HOH A 52 552 110 HOH HOH . 
O 5 HOH A 53 553 115 HOH HOH . 
O 5 HOH A 54 554 91 HOH HOH . 
O 5 HOH A 55 555 117 HOH HOH . 
O 5 HOH A 56 556 90 HOH HOH . 
O 5 HOH A 57 557 20 HOH HOH . 
O 5 HOH A 58 558 25 HOH HOH . 
O 5 HOH A 59 559 21 HOH HOH . 
O 5 HOH A 60 560 116 HOH HOH . 
O 5 HOH A 61 561 118 HOH HOH . 
O 5 HOH A 62 562 73 HOH HOH . 
O 5 HOH A 63 563 93 HOH HOH . 
P 5 HOH B 1 501 74 HOH HOH . 
P 5 HOH B 2 502 40 HOH HOH . 
P 5 HOH B 3 503 42 HOH HOH . 
P 5 HOH B 4 504 19 HOH HOH . 
P 5 HOH B 5 505 51 HOH HOH . 
P 5 HOH B 6 506 12 HOH HOH . 
P 5 HOH B 7 507 77 HOH HOH . 
P 5 HOH B 8 508 31 HOH HOH . 
P 5 HOH B 9 509 13 HOH HOH . 
P 5 HOH B 10 510 55 HOH HOH . 
P 5 HOH B 11 511 7 HOH HOH . 
P 5 HOH B 12 512 26 HOH HOH . 
P 5 HOH B 13 513 35 HOH HOH . 
P 5 HOH B 14 514 27 HOH HOH . 
P 5 HOH B 15 515 22 HOH HOH . 
P 5 HOH B 16 516 58 HOH HOH . 
P 5 HOH B 17 517 9 HOH HOH . 
P 5 HOH B 18 518 4 HOH HOH . 
P 5 HOH B 19 519 70 HOH HOH . 
P 5 HOH B 20 520 86 HOH HOH . 
P 5 HOH B 21 521 24 HOH HOH . 
P 5 HOH B 22 522 100 HOH HOH . 
P 5 HOH B 23 523 62 HOH HOH . 
P 5 HOH B 24 524 43 HOH HOH . 
P 5 HOH B 25 525 38 HOH HOH . 
P 5 HOH B 26 526 39 HOH HOH . 
P 5 HOH B 27 527 65 HOH HOH . 
P 5 HOH B 28 528 34 HOH HOH . 
P 5 HOH B 29 529 64 HOH HOH . 
P 5 HOH B 30 530 14 HOH HOH . 
P 5 HOH B 31 531 67 HOH HOH . 
P 5 HOH B 32 532 17 HOH HOH . 
P 5 HOH B 33 533 63 HOH HOH . 
P 5 HOH B 34 534 109 HOH HOH . 
P 5 HOH B 35 535 48 HOH HOH . 
P 5 HOH B 36 536 87 HOH HOH . 
P 5 HOH B 37 537 32 HOH HOH . 
P 5 HOH B 38 538 61 HOH HOH . 
P 5 HOH B 39 539 76 HOH HOH . 
P 5 HOH B 40 540 83 HOH HOH . 
P 5 HOH B 41 541 33 HOH HOH . 
P 5 HOH B 42 542 98 HOH HOH . 
P 5 HOH B 43 543 66 HOH HOH . 
P 5 HOH B 44 544 104 HOH HOH . 
P 5 HOH B 45 545 121 HOH HOH . 
P 5 HOH B 46 546 68 HOH HOH . 
P 5 HOH B 47 547 92 HOH HOH . 
P 5 HOH B 48 548 122 HOH HOH . 
P 5 HOH B 49 549 106 HOH HOH . 
P 5 HOH B 50 550 105 HOH HOH . 
P 5 HOH B 51 551 103 HOH HOH . 
P 5 HOH B 52 552 60 HOH HOH . 
P 5 HOH B 53 553 108 HOH HOH . 
P 5 HOH B 54 554 41 HOH HOH . 
P 5 HOH B 55 555 30 HOH HOH . 
P 5 HOH B 56 556 47 HOH HOH . 
P 5 HOH B 57 557 84 HOH HOH . 
P 5 HOH B 58 558 120 HOH HOH . 
P 5 HOH B 59 559 107 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C ACY . . . G 4 -5.687 25.452 20.896 1 81.41 ? C ACY 405 A 1 
HETATM 2 O O ACY . . . G 4 -5.811 25.194 19.664 1 79.34 ? O ACY 405 A 1 
HETATM 3 O OXT ACY . . . G 4 -4.637 25.786 21.535 1 89.6 ? OXT ACY 405 A 1 
HETATM 4 C CH3 ACY . . . G 4 -6.994 25.353 21.769 1 76.27 ? CH3 ACY 405 A 1 
#
_model_server_stats.io_time_ms              36 
_model_server_stats.parse_time_ms           46 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           1003 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           4 
#