data_9GLF # _model_server_result.job_id Js5lOZDM_stLQ6Esq3BaWg _model_server_result.datetime_utc '2025-07-08 12:27:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9glf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 9GLF # _exptl.entry_id 9GLF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9GLF _cell.length_a 54.38 _cell.length_b 154.46 _cell.length_c 91.06 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9GLF _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_557 x,-y,-z+2 1 0 0 0 -1 0 0 0 -1 0 0 182.12 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O LEU 243 A LEU 228 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc2 A O GLU 244 A GLU 229 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.867 ? metalc ? metalc3 A O ASP 246 A ASP 231 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc4 A O ILE 249 A ILE 234 1_555 C NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc5 A OD2 ASP 385 A ASP 370 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc6 C NA NA . A NA 402 1_555 I O HOH . A HOH 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? metalc ? metalc7 C NA NA . A NA 402 1_555 I O HOH . A HOH 719 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc8 D NA NA . A NA 403 1_555 I O HOH . A HOH 749 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 9GLF _atom_sites.fract_transf_matrix[1][1] 0.018389 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006474 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010982 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TCA A 1 401 991 TCA LIG . C 3 NA A 1 402 1 NA NA . D 3 NA A 1 403 2 NA NA . E 4 EDO A 1 404 3 EDO EDO . F 5 PEG A 1 405 6 PEG PEG . G 6 PG4 A 1 406 7 PG4 PG4 . H 7 ACT A 1 407 8 ACT ACT . I 8 HOH A 1 501 287 HOH HOH . I 8 HOH A 2 502 163 HOH HOH . I 8 HOH A 3 503 225 HOH HOH . I 8 HOH A 4 504 159 HOH HOH . I 8 HOH A 5 505 139 HOH HOH . I 8 HOH A 6 506 121 HOH HOH . I 8 HOH A 7 507 286 HOH HOH . I 8 HOH A 8 508 117 HOH HOH . I 8 HOH A 9 509 173 HOH HOH . I 8 HOH A 10 510 229 HOH HOH . I 8 HOH A 11 511 79 HOH HOH . I 8 HOH A 12 512 129 HOH HOH . I 8 HOH A 13 513 47 HOH HOH . I 8 HOH A 14 514 113 HOH HOH . I 8 HOH A 15 515 196 HOH HOH . I 8 HOH A 16 516 107 HOH HOH . I 8 HOH A 17 517 221 HOH HOH . I 8 HOH A 18 518 171 HOH HOH . I 8 HOH A 19 519 58 HOH HOH . I 8 HOH A 20 520 279 HOH HOH . I 8 HOH A 21 521 126 HOH HOH . I 8 HOH A 22 522 217 HOH HOH . I 8 HOH A 23 523 22 HOH HOH . I 8 HOH A 24 524 68 HOH HOH . I 8 HOH A 25 525 269 HOH HOH . I 8 HOH A 26 526 270 HOH HOH . I 8 HOH A 27 527 88 HOH HOH . I 8 HOH A 28 528 179 HOH HOH . I 8 HOH A 29 529 254 HOH HOH . I 8 HOH A 30 530 177 HOH HOH . I 8 HOH A 31 531 185 HOH HOH . I 8 HOH A 32 532 132 HOH HOH . I 8 HOH A 33 533 219 HOH HOH . I 8 HOH A 34 534 156 HOH HOH . I 8 HOH A 35 535 257 HOH HOH . I 8 HOH A 36 536 118 HOH HOH . I 8 HOH A 37 537 112 HOH HOH . I 8 HOH A 38 538 153 HOH HOH . I 8 HOH A 39 539 244 HOH HOH . I 8 HOH A 40 540 40 HOH HOH . I 8 HOH A 41 541 53 HOH HOH . I 8 HOH A 42 542 30 HOH HOH . I 8 HOH A 43 543 223 HOH HOH . I 8 HOH A 44 544 105 HOH HOH . I 8 HOH A 45 545 42 HOH HOH . I 8 HOH A 46 546 250 HOH HOH . I 8 HOH A 47 547 12 HOH HOH . I 8 HOH A 48 548 32 HOH HOH . I 8 HOH A 49 549 27 HOH HOH . I 8 HOH A 50 550 23 HOH HOH . I 8 HOH A 51 551 231 HOH HOH . I 8 HOH A 52 552 111 HOH HOH . I 8 HOH A 53 553 52 HOH HOH . I 8 HOH A 54 554 155 HOH HOH . I 8 HOH A 55 555 102 HOH HOH . I 8 HOH A 56 556 147 HOH HOH . I 8 HOH A 57 557 24 HOH HOH . I 8 HOH A 58 558 31 HOH HOH . I 8 HOH A 59 559 14 HOH HOH . I 8 HOH A 60 560 288 HOH HOH . I 8 HOH A 61 561 89 HOH HOH . I 8 HOH A 62 562 204 HOH HOH . I 8 HOH A 63 563 198 HOH HOH . I 8 HOH A 64 564 20 HOH HOH . I 8 HOH A 65 565 64 HOH HOH . I 8 HOH A 66 566 74 HOH HOH . I 8 HOH A 67 567 277 HOH HOH . I 8 HOH A 68 568 134 HOH HOH . I 8 HOH A 69 569 82 HOH HOH . I 8 HOH A 70 570 224 HOH HOH . I 8 HOH A 71 571 21 HOH HOH . I 8 HOH A 72 572 85 HOH HOH . I 8 HOH A 73 573 215 HOH HOH . I 8 HOH A 74 574 97 HOH HOH . I 8 HOH A 75 575 39 HOH HOH . I 8 HOH A 76 576 108 HOH HOH . I 8 HOH A 77 577 165 HOH HOH . I 8 HOH A 78 578 99 HOH HOH . I 8 HOH A 79 579 140 HOH HOH . I 8 HOH A 80 580 51 HOH HOH . I 8 HOH A 81 581 63 HOH HOH . I 8 HOH A 82 582 70 HOH HOH . I 8 HOH A 83 583 114 HOH HOH . I 8 HOH A 84 584 92 HOH HOH . I 8 HOH A 85 585 248 HOH HOH . I 8 HOH A 86 586 43 HOH HOH . I 8 HOH A 87 587 136 HOH HOH . I 8 HOH A 88 588 280 HOH HOH . I 8 HOH A 89 589 275 HOH HOH . I 8 HOH A 90 590 66 HOH HOH . I 8 HOH A 91 591 170 HOH HOH . I 8 HOH A 92 592 290 HOH HOH . I 8 HOH A 93 593 133 HOH HOH . I 8 HOH A 94 594 93 HOH HOH . I 8 HOH A 95 595 16 HOH HOH . I 8 HOH A 96 596 33 HOH HOH . I 8 HOH A 97 597 207 HOH HOH . I 8 HOH A 98 598 80 HOH HOH . I 8 HOH A 99 599 201 HOH HOH . I 8 HOH A 100 600 50 HOH HOH . I 8 HOH A 101 601 239 HOH HOH . I 8 HOH A 102 602 166 HOH HOH . I 8 HOH A 103 603 184 HOH HOH . I 8 HOH A 104 604 38 HOH HOH . I 8 HOH A 105 605 17 HOH HOH . I 8 HOH A 106 606 75 HOH HOH . I 8 HOH A 107 607 57 HOH HOH . I 8 HOH A 108 608 44 HOH HOH . I 8 HOH A 109 609 67 HOH HOH . I 8 HOH A 110 610 65 HOH HOH . I 8 HOH A 111 611 73 HOH HOH . I 8 HOH A 112 612 60 HOH HOH . I 8 HOH A 113 613 72 HOH HOH . I 8 HOH A 114 614 252 HOH HOH . I 8 HOH A 115 615 160 HOH HOH . I 8 HOH A 116 616 28 HOH HOH . I 8 HOH A 117 617 15 HOH HOH . I 8 HOH A 118 618 71 HOH HOH . I 8 HOH A 119 619 59 HOH HOH . I 8 HOH A 120 620 130 HOH HOH . I 8 HOH A 121 621 289 HOH HOH . I 8 HOH A 122 622 37 HOH HOH . I 8 HOH A 123 623 127 HOH HOH . I 8 HOH A 124 624 104 HOH HOH . I 8 HOH A 125 625 35 HOH HOH . I 8 HOH A 126 626 91 HOH HOH . I 8 HOH A 127 627 122 HOH HOH . I 8 HOH A 128 628 216 HOH HOH . I 8 HOH A 129 629 161 HOH HOH . I 8 HOH A 130 630 176 HOH HOH . I 8 HOH A 131 631 78 HOH HOH . I 8 HOH A 132 632 29 HOH HOH . I 8 HOH A 133 633 9 HOH HOH . I 8 HOH A 134 634 148 HOH HOH . I 8 HOH A 135 635 86 HOH HOH . I 8 HOH A 136 636 81 HOH HOH . I 8 HOH A 137 637 11 HOH HOH . I 8 HOH A 138 638 237 HOH HOH . I 8 HOH A 139 639 180 HOH HOH . I 8 HOH A 140 640 61 HOH HOH . I 8 HOH A 141 641 214 HOH HOH . I 8 HOH A 142 642 18 HOH HOH . I 8 HOH A 143 643 234 HOH HOH . I 8 HOH A 144 644 95 HOH HOH . I 8 HOH A 145 645 125 HOH HOH . I 8 HOH A 146 646 55 HOH HOH . I 8 HOH A 147 647 103 HOH HOH . I 8 HOH A 148 648 36 HOH HOH . I 8 HOH A 149 649 90 HOH HOH . I 8 HOH A 150 650 19 HOH HOH . I 8 HOH A 151 651 143 HOH HOH . I 8 HOH A 152 652 192 HOH HOH . I 8 HOH A 153 653 84 HOH HOH . I 8 HOH A 154 654 110 HOH HOH . I 8 HOH A 155 655 45 HOH HOH . I 8 HOH A 156 656 210 HOH HOH . I 8 HOH A 157 657 62 HOH HOH . I 8 HOH A 158 658 34 HOH HOH . I 8 HOH A 159 659 56 HOH HOH . I 8 HOH A 160 660 205 HOH HOH . I 8 HOH A 161 661 187 HOH HOH . I 8 HOH A 162 662 116 HOH HOH . I 8 HOH A 163 663 172 HOH HOH . I 8 HOH A 164 664 106 HOH HOH . I 8 HOH A 165 665 228 HOH HOH . I 8 HOH A 166 666 41 HOH HOH . I 8 HOH A 167 667 150 HOH HOH . I 8 HOH A 168 668 158 HOH HOH . I 8 HOH A 169 669 13 HOH HOH . I 8 HOH A 170 670 131 HOH HOH . I 8 HOH A 171 671 115 HOH HOH . I 8 HOH A 172 672 169 HOH HOH . I 8 HOH A 173 673 232 HOH HOH . I 8 HOH A 174 674 236 HOH HOH . I 8 HOH A 175 675 48 HOH HOH . I 8 HOH A 176 676 144 HOH HOH . I 8 HOH A 177 677 195 HOH HOH . I 8 HOH A 178 678 96 HOH HOH . I 8 HOH A 179 679 25 HOH HOH . I 8 HOH A 180 680 124 HOH HOH . I 8 HOH A 181 681 26 HOH HOH . I 8 HOH A 182 682 272 HOH HOH . I 8 HOH A 183 683 162 HOH HOH . I 8 HOH A 184 684 77 HOH HOH . I 8 HOH A 185 685 253 HOH HOH . I 8 HOH A 186 686 109 HOH HOH . I 8 HOH A 187 687 83 HOH HOH . I 8 HOH A 188 688 128 HOH HOH . I 8 HOH A 189 689 87 HOH HOH . I 8 HOH A 190 690 174 HOH HOH . I 8 HOH A 191 691 119 HOH HOH . I 8 HOH A 192 692 94 HOH HOH . I 8 HOH A 193 693 208 HOH HOH . I 8 HOH A 194 694 212 HOH HOH . I 8 HOH A 195 695 98 HOH HOH . I 8 HOH A 196 696 271 HOH HOH . I 8 HOH A 197 697 135 HOH HOH . I 8 HOH A 198 698 190 HOH HOH . I 8 HOH A 199 699 100 HOH HOH . I 8 HOH A 200 700 10 HOH HOH . I 8 HOH A 201 701 226 HOH HOH . I 8 HOH A 202 702 291 HOH HOH . I 8 HOH A 203 703 149 HOH HOH . I 8 HOH A 204 704 69 HOH HOH . I 8 HOH A 205 705 265 HOH HOH . I 8 HOH A 206 706 168 HOH HOH . I 8 HOH A 207 707 213 HOH HOH . I 8 HOH A 208 708 281 HOH HOH . I 8 HOH A 209 709 183 HOH HOH . I 8 HOH A 210 710 197 HOH HOH . I 8 HOH A 211 711 157 HOH HOH . I 8 HOH A 212 712 54 HOH HOH . I 8 HOH A 213 713 246 HOH HOH . I 8 HOH A 214 714 188 HOH HOH . I 8 HOH A 215 715 194 HOH HOH . I 8 HOH A 216 716 202 HOH HOH . I 8 HOH A 217 717 266 HOH HOH . I 8 HOH A 218 718 123 HOH HOH . I 8 HOH A 219 719 151 HOH HOH . I 8 HOH A 220 720 218 HOH HOH . I 8 HOH A 221 721 241 HOH HOH . I 8 HOH A 222 722 182 HOH HOH . I 8 HOH A 223 723 273 HOH HOH . I 8 HOH A 224 724 200 HOH HOH . I 8 HOH A 225 725 247 HOH HOH . I 8 HOH A 226 726 251 HOH HOH . I 8 HOH A 227 727 256 HOH HOH . I 8 HOH A 228 728 243 HOH HOH . I 8 HOH A 229 729 233 HOH HOH . I 8 HOH A 230 730 138 HOH HOH . I 8 HOH A 231 731 235 HOH HOH . I 8 HOH A 232 732 142 HOH HOH . I 8 HOH A 233 733 261 HOH HOH . I 8 HOH A 234 734 206 HOH HOH . I 8 HOH A 235 735 199 HOH HOH . I 8 HOH A 236 736 191 HOH HOH . I 8 HOH A 237 737 175 HOH HOH . I 8 HOH A 238 738 220 HOH HOH . I 8 HOH A 239 739 164 HOH HOH . I 8 HOH A 240 740 278 HOH HOH . I 8 HOH A 241 741 259 HOH HOH . I 8 HOH A 242 742 262 HOH HOH . I 8 HOH A 243 743 276 HOH HOH . I 8 HOH A 244 744 189 HOH HOH . I 8 HOH A 245 745 258 HOH HOH . I 8 HOH A 246 746 285 HOH HOH . I 8 HOH A 247 747 145 HOH HOH . I 8 HOH A 248 748 260 HOH HOH . I 8 HOH A 249 749 141 HOH HOH . I 8 HOH A 250 750 209 HOH HOH . I 8 HOH A 251 751 249 HOH HOH . I 8 HOH A 252 752 222 HOH HOH . I 8 HOH A 253 753 181 HOH HOH . I 8 HOH A 254 754 268 HOH HOH . I 8 HOH A 255 755 178 HOH HOH . I 8 HOH A 256 756 255 HOH HOH . I 8 HOH A 257 757 283 HOH HOH . I 8 HOH A 258 758 137 HOH HOH . I 8 HOH A 259 759 186 HOH HOH . I 8 HOH A 260 760 76 HOH HOH . I 8 HOH A 261 761 167 HOH HOH . I 8 HOH A 262 762 282 HOH HOH . I 8 HOH A 263 763 274 HOH HOH . I 8 HOH A 264 764 49 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 19.436 _atom_site.Cartn_y 9.828 _atom_site.Cartn_z 73.844 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 48.29 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 403 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 505 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #