data_9GMM
#
_model_server_result.job_id            hxSzopIHjDyG1B-0PhCmjQ 
_model_server_result.datetime_utc      '2025-09-08 15:13:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9gmm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    9GMM 
#
_exptl.entry_id    9GMM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9GMM 
_cell.length_a            41.653 
_cell.length_b            48.002 
_cell.length_c            82.58 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9GMM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     9GMM 
_atom_sites.fract_transf_matrix[1][1]    0.024008 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020832 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012109 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL AAA 1 201 201 GOL GOL . 
C 3 HOH AAA 1 301 67 HOH HOH . 
C 3 HOH AAA 2 302 145 HOH HOH . 
C 3 HOH AAA 3 303 126 HOH HOH . 
C 3 HOH AAA 4 304 79 HOH HOH . 
C 3 HOH AAA 5 305 73 HOH HOH . 
C 3 HOH AAA 6 306 105 HOH HOH . 
C 3 HOH AAA 7 307 138 HOH HOH . 
C 3 HOH AAA 8 308 146 HOH HOH . 
C 3 HOH AAA 9 309 140 HOH HOH . 
C 3 HOH AAA 10 310 12 HOH HOH . 
C 3 HOH AAA 11 311 84 HOH HOH . 
C 3 HOH AAA 12 312 149 HOH HOH . 
C 3 HOH AAA 13 313 19 HOH HOH . 
C 3 HOH AAA 14 314 86 HOH HOH . 
C 3 HOH AAA 15 315 94 HOH HOH . 
C 3 HOH AAA 16 316 9 HOH HOH . 
C 3 HOH AAA 17 317 123 HOH HOH . 
C 3 HOH AAA 18 318 64 HOH HOH . 
C 3 HOH AAA 19 319 83 HOH HOH . 
C 3 HOH AAA 20 320 112 HOH HOH . 
C 3 HOH AAA 21 321 26 HOH HOH . 
C 3 HOH AAA 22 322 81 HOH HOH . 
C 3 HOH AAA 23 323 69 HOH HOH . 
C 3 HOH AAA 24 324 30 HOH HOH . 
C 3 HOH AAA 25 325 88 HOH HOH . 
C 3 HOH AAA 26 326 41 HOH HOH . 
C 3 HOH AAA 27 327 2 HOH HOH . 
C 3 HOH AAA 28 328 155 HOH HOH . 
C 3 HOH AAA 29 329 1 HOH HOH . 
C 3 HOH AAA 30 330 50 HOH HOH . 
C 3 HOH AAA 31 331 124 HOH HOH . 
C 3 HOH AAA 32 332 42 HOH HOH . 
C 3 HOH AAA 33 333 14 HOH HOH . 
C 3 HOH AAA 34 334 58 HOH HOH . 
C 3 HOH AAA 35 335 70 HOH HOH . 
C 3 HOH AAA 36 336 23 HOH HOH . 
C 3 HOH AAA 37 337 21 HOH HOH . 
C 3 HOH AAA 38 338 101 HOH HOH . 
C 3 HOH AAA 39 339 156 HOH HOH . 
C 3 HOH AAA 40 340 28 HOH HOH . 
C 3 HOH AAA 41 341 129 HOH HOH . 
C 3 HOH AAA 42 342 59 HOH HOH . 
C 3 HOH AAA 43 343 7 HOH HOH . 
C 3 HOH AAA 44 344 13 HOH HOH . 
C 3 HOH AAA 45 345 90 HOH HOH . 
C 3 HOH AAA 46 346 22 HOH HOH . 
C 3 HOH AAA 47 347 122 HOH HOH . 
C 3 HOH AAA 48 348 25 HOH HOH . 
C 3 HOH AAA 49 349 77 HOH HOH . 
C 3 HOH AAA 50 350 113 HOH HOH . 
C 3 HOH AAA 51 351 49 HOH HOH . 
C 3 HOH AAA 52 352 3 HOH HOH . 
C 3 HOH AAA 53 353 134 HOH HOH . 
C 3 HOH AAA 54 354 68 HOH HOH . 
C 3 HOH AAA 55 355 128 HOH HOH . 
C 3 HOH AAA 56 356 35 HOH HOH . 
C 3 HOH AAA 57 357 62 HOH HOH . 
C 3 HOH AAA 58 358 4 HOH HOH . 
C 3 HOH AAA 59 359 29 HOH HOH . 
C 3 HOH AAA 60 360 103 HOH HOH . 
C 3 HOH AAA 61 361 130 HOH HOH . 
C 3 HOH AAA 62 362 111 HOH HOH . 
C 3 HOH AAA 63 363 38 HOH HOH . 
C 3 HOH AAA 64 364 74 HOH HOH . 
C 3 HOH AAA 65 365 54 HOH HOH . 
C 3 HOH AAA 66 366 5 HOH HOH . 
C 3 HOH AAA 67 367 162 HOH HOH . 
C 3 HOH AAA 68 368 116 HOH HOH . 
C 3 HOH AAA 69 369 37 HOH HOH . 
C 3 HOH AAA 70 370 24 HOH HOH . 
C 3 HOH AAA 71 371 27 HOH HOH . 
C 3 HOH AAA 72 372 95 HOH HOH . 
C 3 HOH AAA 73 373 148 HOH HOH . 
C 3 HOH AAA 74 374 181 HOH HOH . 
C 3 HOH AAA 75 375 144 HOH HOH . 
C 3 HOH AAA 76 376 15 HOH HOH . 
C 3 HOH AAA 77 377 32 HOH HOH . 
C 3 HOH AAA 78 378 110 HOH HOH . 
C 3 HOH AAA 79 379 44 HOH HOH . 
C 3 HOH AAA 80 380 136 HOH HOH . 
C 3 HOH AAA 81 381 39 HOH HOH . 
C 3 HOH AAA 82 382 107 HOH HOH . 
C 3 HOH AAA 83 383 72 HOH HOH . 
C 3 HOH AAA 84 384 89 HOH HOH . 
C 3 HOH AAA 85 385 143 HOH HOH . 
C 3 HOH AAA 86 386 71 HOH HOH . 
C 3 HOH AAA 87 387 167 HOH HOH . 
C 3 HOH AAA 88 388 63 HOH HOH . 
C 3 HOH AAA 89 389 125 HOH HOH . 
C 3 HOH AAA 90 390 114 HOH HOH . 
C 3 HOH AAA 91 391 157 HOH HOH . 
C 3 HOH AAA 92 392 102 HOH HOH . 
C 3 HOH AAA 93 393 170 HOH HOH . 
C 3 HOH AAA 94 394 40 HOH HOH . 
C 3 HOH AAA 95 395 36 HOH HOH . 
C 3 HOH AAA 96 396 33 HOH HOH . 
C 3 HOH AAA 97 397 52 HOH HOH . 
C 3 HOH AAA 98 398 56 HOH HOH . 
C 3 HOH AAA 99 399 20 HOH HOH . 
C 3 HOH AAA 100 400 11 HOH HOH . 
C 3 HOH AAA 101 401 78 HOH HOH . 
C 3 HOH AAA 102 402 8 HOH HOH . 
C 3 HOH AAA 103 403 93 HOH HOH . 
C 3 HOH AAA 104 404 43 HOH HOH . 
C 3 HOH AAA 105 405 45 HOH HOH . 
C 3 HOH AAA 106 406 10 HOH HOH . 
C 3 HOH AAA 107 407 121 HOH HOH . 
C 3 HOH AAA 108 408 48 HOH HOH . 
C 3 HOH AAA 109 409 165 HOH HOH . 
C 3 HOH AAA 110 410 99 HOH HOH . 
C 3 HOH AAA 111 411 65 HOH HOH . 
C 3 HOH AAA 112 412 127 HOH HOH . 
C 3 HOH AAA 113 413 75 HOH HOH . 
C 3 HOH AAA 114 414 47 HOH HOH . 
C 3 HOH AAA 115 415 18 HOH HOH . 
C 3 HOH AAA 116 416 106 HOH HOH . 
C 3 HOH AAA 117 417 161 HOH HOH . 
C 3 HOH AAA 118 418 96 HOH HOH . 
C 3 HOH AAA 119 419 17 HOH HOH . 
C 3 HOH AAA 120 420 6 HOH HOH . 
C 3 HOH AAA 121 421 115 HOH HOH . 
C 3 HOH AAA 122 422 92 HOH HOH . 
C 3 HOH AAA 123 423 16 HOH HOH . 
C 3 HOH AAA 124 424 117 HOH HOH . 
C 3 HOH AAA 125 425 46 HOH HOH . 
C 3 HOH AAA 126 426 120 HOH HOH . 
C 3 HOH AAA 127 427 100 HOH HOH . 
C 3 HOH AAA 128 428 31 HOH HOH . 
C 3 HOH AAA 129 429 51 HOH HOH . 
C 3 HOH AAA 130 430 98 HOH HOH . 
C 3 HOH AAA 131 431 61 HOH HOH . 
C 3 HOH AAA 132 432 55 HOH HOH . 
C 3 HOH AAA 133 433 163 HOH HOH . 
C 3 HOH AAA 134 434 151 HOH HOH . 
C 3 HOH AAA 135 435 172 HOH HOH . 
C 3 HOH AAA 136 436 91 HOH HOH . 
C 3 HOH AAA 137 437 131 HOH HOH . 
C 3 HOH AAA 138 438 142 HOH HOH . 
C 3 HOH AAA 139 439 174 HOH HOH . 
C 3 HOH AAA 140 440 76 HOH HOH . 
C 3 HOH AAA 141 441 118 HOH HOH . 
C 3 HOH AAA 142 442 60 HOH HOH . 
C 3 HOH AAA 143 443 173 HOH HOH . 
C 3 HOH AAA 144 444 85 HOH HOH . 
C 3 HOH AAA 145 445 141 HOH HOH . 
C 3 HOH AAA 146 446 109 HOH HOH . 
C 3 HOH AAA 147 447 178 HOH HOH . 
C 3 HOH AAA 148 448 179 HOH HOH . 
C 3 HOH AAA 149 449 97 HOH HOH . 
C 3 HOH AAA 150 450 82 HOH HOH . 
C 3 HOH AAA 151 451 166 HOH HOH . 
C 3 HOH AAA 152 452 154 HOH HOH . 
C 3 HOH AAA 153 453 171 HOH HOH . 
C 3 HOH AAA 154 454 175 HOH HOH . 
C 3 HOH AAA 155 455 139 HOH HOH . 
C 3 HOH AAA 156 456 133 HOH HOH . 
C 3 HOH AAA 157 457 153 HOH HOH . 
C 3 HOH AAA 158 458 53 HOH HOH . 
C 3 HOH AAA 159 459 119 HOH HOH . 
C 3 HOH AAA 160 460 34 HOH HOH . 
C 3 HOH AAA 161 461 80 HOH HOH . 
C 3 HOH AAA 162 462 177 HOH HOH . 
C 3 HOH AAA 163 463 168 HOH HOH . 
C 3 HOH AAA 164 464 66 HOH HOH . 
C 3 HOH AAA 165 465 135 HOH HOH . 
C 3 HOH AAA 166 466 132 HOH HOH . 
C 3 HOH AAA 167 467 152 HOH HOH . 
C 3 HOH AAA 168 468 87 HOH HOH . 
C 3 HOH AAA 169 469 176 HOH HOH . 
C 3 HOH AAA 170 470 57 HOH HOH . 
C 3 HOH AAA 171 471 180 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . B 2 -3.07 16.647 21.797 1 39.45 0 C1 GOL 201 AAA 1 
HETATM 2 O O1 GOL . . . B 2 -2.214 17.759 21.518 1 42.52 0 O1 GOL 201 AAA 1 
HETATM 3 C C2 GOL . . . B 2 -3.289 15.709 20.608 1 41.92 0 C2 GOL 201 AAA 1 
HETATM 4 O O2 GOL . . . B 2 -2.283 14.735 20.425 1 34.23 0 O2 GOL 201 AAA 1 
HETATM 5 C C3 GOL . . . B 2 -4.492 14.826 20.707 1 32.5 0 C3 GOL 201 AAA 1 
HETATM 6 O O3 GOL . . . B 2 -5.662 15.602 20.85 1 31.41 0 O3 GOL 201 AAA 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           326 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#