data_9GN1 # _model_server_result.job_id pp5pVesTDar2bXxxJHpbdA _model_server_result.datetime_utc '2024-11-07 05:41:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9gn1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 9GN1 # _exptl.entry_id 9GN1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9GN1 _cell.length_a 146.117 _cell.length_b 146.117 _cell.length_c 146.117 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9GN1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 0 0 146.117 4 'crystal symmetry operation' 4_556 x,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 146.117 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 190 A ASP 179 1_555 B K K . A K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.817 ? metalc ? metalc2 A OD1 ASP 190 A ASP 179 1_555 B K K . A K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? metalc ? metalc3 A O ASP 192 A ASP 181 1_555 B K K . A K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc4 A OD1 ASP 192 A ASP 181 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc5 A OD2 ASP 192 A ASP 181 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? metalc ? metalc6 A O HIS 194 A HIS 183 1_555 B K K . A K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? metalc ? metalc7 A ND1 HIS 194 A HIS 183 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc8 A O TYR 203 A TYR 192 1_555 C K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? metalc ? metalc9 A O ARG 206 A ARG 195 1_555 C K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.982 ? metalc ? metalc10 A O VAL 209 A VAL 198 1_555 C K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.622 ? metalc ? metalc11 A OG SER 213 A SER 202 1_555 B K K . A K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.839 ? metalc ? metalc12 A O LEU 214 A LEU 203 1_555 B K K . A K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc13 A O TYR 238 A TYR 227 1_555 C K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.903 ? metalc ? metalc14 A OD2 ASP 280 A ASP 269 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc15 C K K . A K 402 1_555 H O HOH . A HOH 530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.097 ? metalc ? metalc16 C K K . A K 402 1_555 H O HOH . A HOH 574 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc17 D ZN ZN . A ZN 403 1_555 G OXT ACT . A ACT 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 9GN1 _atom_sites.fract_transf_matrix[1][1] 0.006844 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006844 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006844 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K A 1 401 1 K K . C 2 K A 1 402 2 K K . D 3 ZN A 1 403 3 ZN ZN . E 3 ZN A 1 404 4 ZN ZN . F 4 IMD A 1 405 1 IMD IMD . G 5 ACT A 1 406 2 ACT ACT . H 6 HOH A 1 501 136 HOH HOH . H 6 HOH A 2 502 113 HOH HOH . H 6 HOH A 3 503 100 HOH HOH . H 6 HOH A 4 504 45 HOH HOH . H 6 HOH A 5 505 119 HOH HOH . H 6 HOH A 6 506 12 HOH HOH . H 6 HOH A 7 507 19 HOH HOH . H 6 HOH A 8 508 26 HOH HOH . H 6 HOH A 9 509 42 HOH HOH . H 6 HOH A 10 510 98 HOH HOH . H 6 HOH A 11 511 94 HOH HOH . H 6 HOH A 12 512 57 HOH HOH . H 6 HOH A 13 513 109 HOH HOH . H 6 HOH A 14 514 85 HOH HOH . H 6 HOH A 15 515 86 HOH HOH . H 6 HOH A 16 516 125 HOH HOH . H 6 HOH A 17 517 63 HOH HOH . H 6 HOH A 18 518 54 HOH HOH . H 6 HOH A 19 519 1 HOH HOH . H 6 HOH A 20 520 13 HOH HOH . H 6 HOH A 21 521 70 HOH HOH . H 6 HOH A 22 522 96 HOH HOH . H 6 HOH A 23 523 115 HOH HOH . H 6 HOH A 24 524 15 HOH HOH . H 6 HOH A 25 525 116 HOH HOH . H 6 HOH A 26 526 75 HOH HOH . H 6 HOH A 27 527 129 HOH HOH . H 6 HOH A 28 528 90 HOH HOH . H 6 HOH A 29 529 124 HOH HOH . H 6 HOH A 30 530 2 HOH HOH . H 6 HOH A 31 531 22 HOH HOH . H 6 HOH A 32 532 38 HOH HOH . H 6 HOH A 33 533 37 HOH HOH . H 6 HOH A 34 534 68 HOH HOH . H 6 HOH A 35 535 133 HOH HOH . H 6 HOH A 36 536 106 HOH HOH . H 6 HOH A 37 537 76 HOH HOH . H 6 HOH A 38 538 10 HOH HOH . H 6 HOH A 39 539 28 HOH HOH . H 6 HOH A 40 540 18 HOH HOH . H 6 HOH A 41 541 118 HOH HOH . H 6 HOH A 42 542 5 HOH HOH . H 6 HOH A 43 543 17 HOH HOH . H 6 HOH A 44 544 24 HOH HOH . H 6 HOH A 45 545 7 HOH HOH . H 6 HOH A 46 546 35 HOH HOH . H 6 HOH A 47 547 79 HOH HOH . H 6 HOH A 48 548 102 HOH HOH . H 6 HOH A 49 549 33 HOH HOH . H 6 HOH A 50 550 83 HOH HOH . H 6 HOH A 51 551 95 HOH HOH . H 6 HOH A 52 552 16 HOH HOH . H 6 HOH A 53 553 9 HOH HOH . H 6 HOH A 54 554 20 HOH HOH . H 6 HOH A 55 555 87 HOH HOH . H 6 HOH A 56 556 99 HOH HOH . H 6 HOH A 57 557 110 HOH HOH . H 6 HOH A 58 558 41 HOH HOH . H 6 HOH A 59 559 6 HOH HOH . H 6 HOH A 60 560 30 HOH HOH . H 6 HOH A 61 561 11 HOH HOH . H 6 HOH A 62 562 34 HOH HOH . H 6 HOH A 63 563 25 HOH HOH . H 6 HOH A 64 564 46 HOH HOH . H 6 HOH A 65 565 14 HOH HOH . H 6 HOH A 66 566 23 HOH HOH . H 6 HOH A 67 567 48 HOH HOH . H 6 HOH A 68 568 93 HOH HOH . H 6 HOH A 69 569 73 HOH HOH . H 6 HOH A 70 570 122 HOH HOH . H 6 HOH A 71 571 108 HOH HOH . H 6 HOH A 72 572 104 HOH HOH . H 6 HOH A 73 573 64 HOH HOH . H 6 HOH A 74 574 69 HOH HOH . H 6 HOH A 75 575 29 HOH HOH . H 6 HOH A 76 576 27 HOH HOH . H 6 HOH A 77 577 21 HOH HOH . H 6 HOH A 78 578 44 HOH HOH . H 6 HOH A 79 579 47 HOH HOH . H 6 HOH A 80 580 53 HOH HOH . H 6 HOH A 81 581 139 HOH HOH . H 6 HOH A 82 582 32 HOH HOH . H 6 HOH A 83 583 105 HOH HOH . H 6 HOH A 84 584 43 HOH HOH . H 6 HOH A 85 585 59 HOH HOH . H 6 HOH A 86 586 134 HOH HOH . H 6 HOH A 87 587 82 HOH HOH . H 6 HOH A 88 588 60 HOH HOH . H 6 HOH A 89 589 8 HOH HOH . H 6 HOH A 90 590 81 HOH HOH . H 6 HOH A 91 591 121 HOH HOH . H 6 HOH A 92 592 58 HOH HOH . H 6 HOH A 93 593 56 HOH HOH . H 6 HOH A 94 594 135 HOH HOH . H 6 HOH A 95 595 74 HOH HOH . H 6 HOH A 96 596 51 HOH HOH . H 6 HOH A 97 597 88 HOH HOH . H 6 HOH A 98 598 40 HOH HOH . H 6 HOH A 99 599 39 HOH HOH . H 6 HOH A 100 600 137 HOH HOH . H 6 HOH A 101 601 31 HOH HOH . H 6 HOH A 102 602 132 HOH HOH . H 6 HOH A 103 603 36 HOH HOH . H 6 HOH A 104 604 101 HOH HOH . H 6 HOH A 105 605 52 HOH HOH . H 6 HOH A 106 606 72 HOH HOH . H 6 HOH A 107 607 4 HOH HOH . H 6 HOH A 108 608 50 HOH HOH . H 6 HOH A 109 609 97 HOH HOH . H 6 HOH A 110 610 114 HOH HOH . H 6 HOH A 111 611 65 HOH HOH . H 6 HOH A 112 612 128 HOH HOH . H 6 HOH A 113 613 62 HOH HOH . H 6 HOH A 114 614 127 HOH HOH . H 6 HOH A 115 615 61 HOH HOH . H 6 HOH A 116 616 123 HOH HOH . H 6 HOH A 117 617 3 HOH HOH . H 6 HOH A 118 618 55 HOH HOH . H 6 HOH A 119 619 107 HOH HOH . H 6 HOH A 120 620 130 HOH HOH . H 6 HOH A 121 621 77 HOH HOH . H 6 HOH A 122 622 112 HOH HOH . H 6 HOH A 123 623 78 HOH HOH . H 6 HOH A 124 624 138 HOH HOH . H 6 HOH A 125 625 49 HOH HOH . H 6 HOH A 126 626 131 HOH HOH . H 6 HOH A 127 627 84 HOH HOH . H 6 HOH A 128 628 92 HOH HOH . H 6 HOH A 129 629 111 HOH HOH . H 6 HOH A 130 630 117 HOH HOH . H 6 HOH A 131 631 89 HOH HOH . H 6 HOH A 132 632 103 HOH HOH . H 6 HOH A 133 633 126 HOH HOH . H 6 HOH A 134 634 120 HOH HOH . H 6 HOH A 135 635 80 HOH HOH . H 6 HOH A 136 636 66 HOH HOH . H 6 HOH A 137 637 71 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -19.716 _atom_site.Cartn_y 8.839 _atom_site.Cartn_z 64.289 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 41.7 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 403 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #