data_9GN2
#
_model_server_result.job_id            FD1JkptkrStIHC17U6Fygw 
_model_server_result.datetime_utc      '2024-12-26 01:03:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9gn2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    9GN2 
#
_exptl.entry_id    9GN2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              111.102 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            6-AMINOPYRIMIDIN-2(1H)-ONE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9GN2 
_cell.length_a            148.981 
_cell.length_b            148.981 
_cell.length_c            148.981 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9GN2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        199 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 21 3' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F 1 1 
A,B,C,D,E,F 1 2 
A,B,C,D,E,F 1 3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 
3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C4 H5 N3 O' 
_chem_comp.formula_weight    111.102 
_chem_comp.id                CYT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              6-AMINOPYRIMIDIN-2(1H)-ONE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     CYTOSINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N3 C4 CYT sing 70 n y 
N3 C2 CYT sing 71 n y 
N3 HN3 CYT sing 72 n n 
C4 N4 CYT sing 73 n n 
C4 C5 CYT doub 74 n y 
N1 C2 CYT sing 75 n y 
N1 C6 CYT doub 76 n y 
C2 O2 CYT doub 77 n n 
N4 HN41 CYT sing 78 n n 
N4 HN42 CYT sing 79 n n 
C5 C6 CYT sing 80 n y 
C5 H5 CYT sing 81 n n 
C6 H6 CYT sing 82 n n 
#
_atom_sites.entry_id                     9GN2 
_atom_sites.fract_transf_matrix[1][1]    0.006712 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006712 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006712 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CYT A 1 201 201 CYT CYT . 
D 3 RIB A 1 202 202 RIB RIB . 
E 4 HOH A 1 301 23 HOH HOH . 
E 4 HOH A 2 302 98 HOH HOH . 
E 4 HOH A 3 303 106 HOH HOH . 
E 4 HOH A 4 304 113 HOH HOH . 
E 4 HOH A 5 305 120 HOH HOH . 
E 4 HOH A 6 306 121 HOH HOH . 
E 4 HOH A 7 307 14 HOH HOH . 
E 4 HOH A 8 308 84 HOH HOH . 
E 4 HOH A 9 309 80 HOH HOH . 
E 4 HOH A 10 310 3 HOH HOH . 
E 4 HOH A 11 311 79 HOH HOH . 
E 4 HOH A 12 312 91 HOH HOH . 
E 4 HOH A 13 313 87 HOH HOH . 
E 4 HOH A 14 314 10 HOH HOH . 
E 4 HOH A 15 315 76 HOH HOH . 
E 4 HOH A 16 316 100 HOH HOH . 
E 4 HOH A 17 317 78 HOH HOH . 
E 4 HOH A 18 318 81 HOH HOH . 
E 4 HOH A 19 319 94 HOH HOH . 
E 4 HOH A 20 320 124 HOH HOH . 
E 4 HOH A 21 321 101 HOH HOH . 
E 4 HOH A 22 322 105 HOH HOH . 
E 4 HOH A 23 323 90 HOH HOH . 
E 4 HOH A 24 324 83 HOH HOH . 
E 4 HOH A 25 325 111 HOH HOH . 
E 4 HOH A 26 326 125 HOH HOH . 
E 4 HOH A 27 327 88 HOH HOH . 
E 4 HOH A 28 328 119 HOH HOH . 
E 4 HOH A 29 329 103 HOH HOH . 
E 4 HOH A 30 330 116 HOH HOH . 
E 4 HOH A 31 331 6 HOH HOH . 
E 4 HOH A 32 332 115 HOH HOH . 
E 4 HOH A 33 333 112 HOH HOH . 
E 4 HOH A 34 334 97 HOH HOH . 
E 4 HOH A 35 335 122 HOH HOH . 
F 4 HOH B 1 201 108 HOH HOH . 
F 4 HOH B 2 202 95 HOH HOH . 
F 4 HOH B 3 203 109 HOH HOH . 
F 4 HOH B 4 204 77 HOH HOH . 
F 4 HOH B 5 205 85 HOH HOH . 
F 4 HOH B 6 206 52 HOH HOH . 
F 4 HOH B 7 207 96 HOH HOH . 
F 4 HOH B 8 208 86 HOH HOH . 
F 4 HOH B 9 209 102 HOH HOH . 
F 4 HOH B 10 210 11 HOH HOH . 
F 4 HOH B 11 211 1 HOH HOH . 
F 4 HOH B 12 212 82 HOH HOH . 
F 4 HOH B 13 213 19 HOH HOH . 
F 4 HOH B 14 214 22 HOH HOH . 
F 4 HOH B 15 215 13 HOH HOH . 
F 4 HOH B 16 216 117 HOH HOH . 
F 4 HOH B 17 217 104 HOH HOH . 
F 4 HOH B 18 218 93 HOH HOH . 
F 4 HOH B 19 219 17 HOH HOH . 
F 4 HOH B 20 220 34 HOH HOH . 
F 4 HOH B 21 221 49 HOH HOH . 
F 4 HOH B 22 222 123 HOH HOH . 
F 4 HOH B 23 223 92 HOH HOH . 
F 4 HOH B 24 224 107 HOH HOH . 
F 4 HOH B 25 225 89 HOH HOH . 
F 4 HOH B 26 226 118 HOH HOH . 
F 4 HOH B 27 227 110 HOH HOH . 
F 4 HOH B 28 228 99 HOH HOH . 
F 4 HOH B 29 229 114 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N3 CYT . . . C 2 22.468 10.368 43.574 1 69.09 ? N3 CYT 201 A 1 
HETATM 2 C C4 CYT . . . C 2 22.523 10.591 44.923 1 73.44 ? C4 CYT 201 A 1 
HETATM 3 N N1 CYT . . . C 2 22.033 12.663 43.183 1 71.78 ? N1 CYT 201 A 1 
HETATM 4 C C2 CYT . . . C 2 22.23 11.39 42.673 1 86.45 ? C2 CYT 201 A 1 
HETATM 5 O O2 CYT . . . C 2 22.197 11.13 41.42 1 66.1 ? O2 CYT 201 A 1 
HETATM 6 N N4 CYT . . . C 2 22.748 9.576 45.755 1 92.71 ? N4 CYT 201 A 1 
HETATM 7 C C5 CYT . . . C 2 22.332 11.862 45.41 1 70.17 ? C5 CYT 201 A 1 
HETATM 8 C C6 CYT . . . C 2 22.091 12.875 44.51 1 72.54 ? C6 CYT 201 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           8 
#