data_9GN7 # _model_server_result.job_id cSOz635y2knr5VH3EdVzig _model_server_result.datetime_utc '2024-11-24 20:17:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9gn7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":407}' # _entry.id 9GN7 # _exptl.entry_id 9GN7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9GN7 _cell.length_a 146.57 _cell.length_b 146.57 _cell.length_c 146.57 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9GN7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 0 0 146.57 4 'crystal symmetry operation' 4_556 x,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 146.57 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 190 A ASP 179 1_555 B K K . A K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.835 ? metalc ? metalc2 A OD1 ASP 190 A ASP 179 1_555 B K K . A K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? metalc ? metalc3 A O ASP 192 A ASP 181 1_555 B K K . A K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? metalc ? metalc4 A OD1 ASP 192 A ASP 181 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc5 A OD2 ASP 192 A ASP 181 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc6 A O HIS 194 A HIS 183 1_555 B K K . A K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? metalc ? metalc7 A ND1 HIS 194 A HIS 183 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc8 A O TYR 203 A TYR 192 1_555 C K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? metalc ? metalc9 A O ARG 206 A ARG 195 1_555 C K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.968 ? metalc ? metalc10 A O VAL 209 A VAL 198 1_555 C K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc11 A OG SER 213 A SER 202 1_555 B K K . A K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.858 ? metalc ? metalc12 A O LEU 214 A LEU 203 1_555 B K K . A K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc13 A O TYR 238 A TYR 227 1_555 C K K . A K 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.059 ? metalc ? metalc14 A OD2 ASP 280 A ASP 269 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc15 C K K . A K 402 1_555 I O HOH . A HOH 541 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.184 ? metalc ? metalc16 C K K . A K 402 1_555 I O HOH . A HOH 584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc17 D ZN ZN . A ZN 403 1_555 F O1 TSN . A TSN 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.841 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 9GN7 _atom_sites.fract_transf_matrix[1][1] 0.006823 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006823 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006823 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K A 1 401 1 K K . C 2 K A 1 402 2 K K . D 3 ZN A 1 403 3 ZN ZN . E 4 PO4 A 1 404 4 PO4 PO4 . F 5 TSN A 1 405 1 TSN TSN . G 6 GOL A 1 406 2 GOL GOL . H 6 GOL A 1 407 3 GOL GOL . I 7 HOH A 1 501 106 HOH HOH . I 7 HOH A 2 502 55 HOH HOH . I 7 HOH A 3 503 28 HOH HOH . I 7 HOH A 4 504 29 HOH HOH . I 7 HOH A 5 505 105 HOH HOH . I 7 HOH A 6 506 71 HOH HOH . I 7 HOH A 7 507 61 HOH HOH . I 7 HOH A 8 508 116 HOH HOH . I 7 HOH A 9 509 78 HOH HOH . I 7 HOH A 10 510 118 HOH HOH . I 7 HOH A 11 511 95 HOH HOH . I 7 HOH A 12 512 100 HOH HOH . I 7 HOH A 13 513 30 HOH HOH . I 7 HOH A 14 514 41 HOH HOH . I 7 HOH A 15 515 67 HOH HOH . I 7 HOH A 16 516 25 HOH HOH . I 7 HOH A 17 517 68 HOH HOH . I 7 HOH A 18 518 44 HOH HOH . I 7 HOH A 19 519 39 HOH HOH . I 7 HOH A 20 520 96 HOH HOH . I 7 HOH A 21 521 15 HOH HOH . I 7 HOH A 22 522 26 HOH HOH . I 7 HOH A 23 523 72 HOH HOH . I 7 HOH A 24 524 9 HOH HOH . I 7 HOH A 25 525 7 HOH HOH . I 7 HOH A 26 526 75 HOH HOH . I 7 HOH A 27 527 32 HOH HOH . I 7 HOH A 28 528 90 HOH HOH . I 7 HOH A 29 529 92 HOH HOH . I 7 HOH A 30 530 97 HOH HOH . I 7 HOH A 31 531 16 HOH HOH . I 7 HOH A 32 532 23 HOH HOH . I 7 HOH A 33 533 58 HOH HOH . I 7 HOH A 34 534 35 HOH HOH . I 7 HOH A 35 535 69 HOH HOH . I 7 HOH A 36 536 43 HOH HOH . I 7 HOH A 37 537 112 HOH HOH . I 7 HOH A 38 538 86 HOH HOH . I 7 HOH A 39 539 82 HOH HOH . I 7 HOH A 40 540 12 HOH HOH . I 7 HOH A 41 541 93 HOH HOH . I 7 HOH A 42 542 33 HOH HOH . I 7 HOH A 43 543 45 HOH HOH . I 7 HOH A 44 544 52 HOH HOH . I 7 HOH A 45 545 20 HOH HOH . I 7 HOH A 46 546 83 HOH HOH . I 7 HOH A 47 547 8 HOH HOH . I 7 HOH A 48 548 91 HOH HOH . I 7 HOH A 49 549 11 HOH HOH . I 7 HOH A 50 550 2 HOH HOH . I 7 HOH A 51 551 89 HOH HOH . I 7 HOH A 52 552 62 HOH HOH . I 7 HOH A 53 553 81 HOH HOH . I 7 HOH A 54 554 51 HOH HOH . I 7 HOH A 55 555 3 HOH HOH . I 7 HOH A 56 556 117 HOH HOH . I 7 HOH A 57 557 27 HOH HOH . I 7 HOH A 58 558 54 HOH HOH . I 7 HOH A 59 559 101 HOH HOH . I 7 HOH A 60 560 84 HOH HOH . I 7 HOH A 61 561 4 HOH HOH . I 7 HOH A 62 562 119 HOH HOH . I 7 HOH A 63 563 22 HOH HOH . I 7 HOH A 64 564 37 HOH HOH . I 7 HOH A 65 565 50 HOH HOH . I 7 HOH A 66 566 56 HOH HOH . I 7 HOH A 67 567 53 HOH HOH . I 7 HOH A 68 568 6 HOH HOH . I 7 HOH A 69 569 36 HOH HOH . I 7 HOH A 70 570 110 HOH HOH . I 7 HOH A 71 571 109 HOH HOH . I 7 HOH A 72 572 34 HOH HOH . I 7 HOH A 73 573 14 HOH HOH . I 7 HOH A 74 574 85 HOH HOH . I 7 HOH A 75 575 103 HOH HOH . I 7 HOH A 76 576 38 HOH HOH . I 7 HOH A 77 577 77 HOH HOH . I 7 HOH A 78 578 42 HOH HOH . I 7 HOH A 79 579 65 HOH HOH . I 7 HOH A 80 580 24 HOH HOH . I 7 HOH A 81 581 102 HOH HOH . I 7 HOH A 82 582 21 HOH HOH . I 7 HOH A 83 583 64 HOH HOH . I 7 HOH A 84 584 63 HOH HOH . I 7 HOH A 85 585 18 HOH HOH . I 7 HOH A 86 586 98 HOH HOH . I 7 HOH A 87 587 5 HOH HOH . I 7 HOH A 88 588 47 HOH HOH . I 7 HOH A 89 589 57 HOH HOH . I 7 HOH A 90 590 66 HOH HOH . I 7 HOH A 91 591 74 HOH HOH . I 7 HOH A 92 592 40 HOH HOH . I 7 HOH A 93 593 31 HOH HOH . I 7 HOH A 94 594 70 HOH HOH . I 7 HOH A 95 595 48 HOH HOH . I 7 HOH A 96 596 79 HOH HOH . I 7 HOH A 97 597 13 HOH HOH . I 7 HOH A 98 598 99 HOH HOH . I 7 HOH A 99 599 59 HOH HOH . I 7 HOH A 100 600 49 HOH HOH . I 7 HOH A 101 601 10 HOH HOH . I 7 HOH A 102 602 19 HOH HOH . I 7 HOH A 103 603 80 HOH HOH . I 7 HOH A 104 604 17 HOH HOH . I 7 HOH A 105 605 60 HOH HOH . I 7 HOH A 106 606 46 HOH HOH . I 7 HOH A 107 607 114 HOH HOH . I 7 HOH A 108 608 73 HOH HOH . I 7 HOH A 109 609 94 HOH HOH . I 7 HOH A 110 610 1 HOH HOH . I 7 HOH A 111 611 104 HOH HOH . I 7 HOH A 112 612 87 HOH HOH . I 7 HOH A 113 613 111 HOH HOH . I 7 HOH A 114 614 113 HOH HOH . I 7 HOH A 115 615 115 HOH HOH . I 7 HOH A 116 616 107 HOH HOH . I 7 HOH A 117 617 108 HOH HOH . I 7 HOH A 118 618 76 HOH HOH . I 7 HOH A 119 619 88 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . A . H 6 -13.522 6.695 65.669 0.5 55.18 ? C1 GOL 407 A 1 HETATM 2 C C1 GOL . B . H 6 -14.002 8.065 67.043 0.5 78.74 ? C1 GOL 407 A 1 HETATM 3 O O1 GOL . A . H 6 -12.91 6.532 64.388 0.5 59.05 ? O1 GOL 407 A 1 HETATM 4 O O1 GOL . B . H 6 -12.717 8.675 66.872 0.5 65.46 ? O1 GOL 407 A 1 HETATM 5 C C2 GOL . . . H 6 -14.665 7.714 65.724 1 65.48 ? C2 GOL 407 A 1 HETATM 6 O O2 GOL . . . H 6 -15.96 7.069 65.834 1 47.82 ? O2 GOL 407 A 1 HETATM 7 C C3 GOL . . . H 6 -14.71 8.893 64.74 1 68.36 ? C3 GOL 407 A 1 HETATM 8 O O3 GOL . . . H 6 -14.002 8.707 63.496 1 100.16 ? O3 GOL 407 A 1 HETATM 9 H H11 GOL . A . H 6 -12.826 6.973 66.314 0.5 58.17 ? H11 GOL 407 A 1 HETATM 10 H H11 GOL . B . H 6 -14.588 8.683 67.544 0.5 71.68 ? H11 GOL 407 A 1 HETATM 11 H H12 GOL . A . H 6 -13.868 5.822 65.964 0.5 57.79 ? H12 GOL 407 A 1 HETATM 12 H H12 GOL . B . H 6 -13.897 7.242 67.573 0.5 71.46 ? H12 GOL 407 A 1 HETATM 13 H HO1 GOL . A . H 6 -11.902 5.956 66.254 0 68.15 ? HO1 GOL 407 A 1 HETATM 14 H HO1 GOL . B . H 6 -12.064 7.949 67.859 0 84.76 ? HO1 GOL 407 A 1 HETATM 15 H H2 GOL . A . H 6 -14.538 8.152 66.6 0.5 60.26 ? H2 GOL 407 A 1 HETATM 16 H H2 GOL . B . H 6 -14.071 7.047 65.305 0.5 64.48 ? H2 GOL 407 A 1 HETATM 17 H HO2 GOL . . . H 6 -16.005 7.437 66.379 0 47.51 ? HO2 GOL 407 A 1 HETATM 18 H H31 GOL . . . H 6 -14.342 9.692 65.191 1 73.88 ? H31 GOL 407 A 1 HETATM 19 H H32 GOL . . . H 6 -15.652 9.082 64.527 1 73.78 ? H32 GOL 407 A 1 HETATM 20 H HO3 GOL . . . H 6 -14.034 9.485 62.851 0 93.03 ? HO3 GOL 407 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 20 #