data_9GNG
#
_model_server_result.job_id            4_wLvneclAdty4zyS94ezQ 
_model_server_result.datetime_utc      '2025-02-05 11:55:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9gng 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    9GNG 
#
_exptl.entry_id    9GNG 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.17 
_cell.angle_gamma         90 
_cell.entry_id            9GNG 
_cell.length_a            99.426 
_cell.length_b            58.354 
_cell.length_c            66.822 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 9GNG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
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_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 237 n n 
C1 H11 MPD sing 238 n n 
C1 H12 MPD sing 239 n n 
C1 H13 MPD sing 240 n n 
C2 O2 MPD sing 241 n n 
C2 CM MPD sing 242 n n 
C2 C3 MPD sing 243 n n 
O2 HO2 MPD sing 244 n n 
CM HM1 MPD sing 245 n n 
CM HM2 MPD sing 246 n n 
CM HM3 MPD sing 247 n n 
C3 C4 MPD sing 248 n n 
C3 H31 MPD sing 249 n n 
C3 H32 MPD sing 250 n n 
C4 O4 MPD sing 251 n n 
C4 C5 MPD sing 252 n n 
C4 H4 MPD sing 253 n n 
O4 HO4 MPD sing 254 n n 
C5 H51 MPD sing 255 n n 
C5 H52 MPD sing 256 n n 
C5 H53 MPD sing 257 n n 
#
_atom_sites.entry_id                     9GNG 
_atom_sites.fract_transf_matrix[1][1]    0.010058 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001444 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017137 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015119 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MPD X 1 301 301 MPD MPD . 
C 3 PX4 X 1 302 500 PX4 MC3 . 
D 4 HOH X 1 401 509 HOH HOH . 
D 4 HOH X 2 402 518 HOH HOH . 
D 4 HOH X 3 403 511 HOH HOH . 
D 4 HOH X 4 404 505 HOH HOH . 
D 4 HOH X 5 405 543 HOH HOH . 
D 4 HOH X 6 406 526 HOH HOH . 
D 4 HOH X 7 407 516 HOH HOH . 
D 4 HOH X 8 408 501 HOH HOH . 
D 4 HOH X 9 409 517 HOH HOH . 
D 4 HOH X 10 410 512 HOH HOH . 
D 4 HOH X 11 411 506 HOH HOH . 
D 4 HOH X 12 412 513 HOH HOH . 
D 4 HOH X 13 413 547 HOH HOH . 
D 4 HOH X 14 414 546 HOH HOH . 
D 4 HOH X 15 415 522 HOH HOH . 
D 4 HOH X 16 416 503 HOH HOH . 
D 4 HOH X 17 417 6 HOH HOH . 
D 4 HOH X 18 418 529 HOH HOH . 
D 4 HOH X 19 419 521 HOH HOH . 
D 4 HOH X 20 420 502 HOH HOH . 
D 4 HOH X 21 421 542 HOH HOH . 
D 4 HOH X 22 422 520 HOH HOH . 
D 4 HOH X 23 423 532 HOH HOH . 
D 4 HOH X 24 424 1 HOH HOH . 
D 4 HOH X 25 425 538 HOH HOH . 
D 4 HOH X 26 426 504 HOH HOH . 
D 4 HOH X 27 427 508 HOH HOH . 
D 4 HOH X 28 428 539 HOH HOH . 
D 4 HOH X 29 429 7 HOH HOH . 
D 4 HOH X 30 430 525 HOH HOH . 
D 4 HOH X 31 431 533 HOH HOH . 
D 4 HOH X 32 432 528 HOH HOH . 
D 4 HOH X 33 433 523 HOH HOH . 
D 4 HOH X 34 434 514 HOH HOH . 
D 4 HOH X 35 435 537 HOH HOH . 
D 4 HOH X 36 436 11 HOH HOH . 
D 4 HOH X 37 437 527 HOH HOH . 
D 4 HOH X 38 438 530 HOH HOH . 
D 4 HOH X 39 439 545 HOH HOH . 
D 4 HOH X 40 440 8 HOH HOH . 
D 4 HOH X 41 441 540 HOH HOH . 
D 4 HOH X 42 442 534 HOH HOH . 
D 4 HOH X 43 443 535 HOH HOH . 
D 4 HOH X 44 444 519 HOH HOH . 
D 4 HOH X 45 445 544 HOH HOH . 
D 4 HOH X 46 446 2 HOH HOH . 
D 4 HOH X 47 447 541 HOH HOH . 
D 4 HOH X 48 448 524 HOH HOH . 
D 4 HOH X 49 449 3 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . B 2 19.597 47.442 15.041 1 80.27 ? C1 MPD 301 X 1 
HETATM 2 C C2 MPD . . . B 2 18.786 46.928 16.213 1 79.83 ? C2 MPD 301 X 1 
HETATM 3 O O2 MPD . . . B 2 17.825 46.083 15.583 1 76.77 ? O2 MPD 301 X 1 
HETATM 4 C CM MPD . . . B 2 18.078 48.069 16.932 1 77.3 ? CM MPD 301 X 1 
HETATM 5 C C3 MPD . . . B 2 19.669 46.098 17.15 1 83.38 ? C3 MPD 301 X 1 
HETATM 6 C C4 MPD . . . B 2 18.97 45.189 18.123 1 89.62 ? C4 MPD 301 X 1 
HETATM 7 O O4 MPD . . . B 2 18.481 44.026 17.422 1 90.34 ? O4 MPD 301 X 1 
HETATM 8 C C5 MPD . . . B 2 19.862 44.79 19.277 1 86.48 ? C5 MPD 301 X 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           8 
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