data_9GNG
#
_model_server_result.job_id            h0fpoyXah9gRZo2HN-nqFA 
_model_server_result.datetime_utc      '2025-02-05 11:51:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9gng 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":302}' 
#
_entry.id    9GNG 
#
_exptl.entry_id    9GNG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              678.94 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.17 
_cell.angle_gamma         90 
_cell.entry_id            9GNG 
_cell.length_a            99.426 
_cell.length_b            58.354 
_cell.length_c            66.822 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9GNG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C36 H73 N O8 P 1' 
_chem_comp.formula_weight    678.94 
_chem_comp.id                PX4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 P1 PX4 sing 298 n n 
O1 H1P PX4 sing 299 n n 
O2 P1 PX4 doub 300 n n 
P1 O3 PX4 sing 301 n n 
P1 O4 PX4 sing 302 n n 
O3 C1 PX4 sing 303 n n 
C1 C2 PX4 sing 304 n n 
C1 H1 PX4 sing 305 n n 
C1 H2 PX4 sing 306 n n 
C2 N1 PX4 sing 307 n n 
C2 H3 PX4 sing 308 n n 
C2 H4 PX4 sing 309 n n 
N1 C3 PX4 sing 310 n n 
N1 C4 PX4 sing 311 n n 
N1 C5 PX4 sing 312 n n 
C3 H5 PX4 sing 313 n n 
C3 H6 PX4 sing 314 n n 
C3 H7 PX4 sing 315 n n 
C4 H8 PX4 sing 316 n n 
C4 H9 PX4 sing 317 n n 
C4 H10 PX4 sing 318 n n 
C5 H11 PX4 sing 319 n n 
C5 H12 PX4 sing 320 n n 
C5 H13 PX4 sing 321 n n 
O4 C6 PX4 sing 322 n n 
C6 C7 PX4 sing 323 n n 
C6 H14 PX4 sing 324 n n 
C6 H15 PX4 sing 325 n n 
C7 C8 PX4 sing 326 n n 
C7 O7 PX4 sing 327 n n 
C7 H16 PX4 sing 328 n n 
C8 O5 PX4 sing 329 n n 
C8 H17 PX4 sing 330 n n 
C8 H18 PX4 sing 331 n n 
O5 C9 PX4 sing 332 n n 
C9 O6 PX4 doub 333 n n 
C9 C10 PX4 sing 334 n n 
C10 C11 PX4 sing 335 n n 
C10 H19 PX4 sing 336 n n 
C10 H20 PX4 sing 337 n n 
C11 C12 PX4 sing 338 n n 
C11 H21 PX4 sing 339 n n 
C11 H22 PX4 sing 340 n n 
C12 C13 PX4 sing 341 n n 
C12 H23 PX4 sing 342 n n 
C12 H24 PX4 sing 343 n n 
C13 C14 PX4 sing 344 n n 
C13 H25 PX4 sing 345 n n 
C13 H26 PX4 sing 346 n n 
C14 C15 PX4 sing 347 n n 
C14 H27 PX4 sing 348 n n 
C14 H28 PX4 sing 349 n n 
C15 C16 PX4 sing 350 n n 
C15 H29 PX4 sing 351 n n 
C15 H30 PX4 sing 352 n n 
C16 C17 PX4 sing 353 n n 
C16 H31 PX4 sing 354 n n 
C16 H32 PX4 sing 355 n n 
C17 C18 PX4 sing 356 n n 
C17 H33 PX4 sing 357 n n 
C17 H34 PX4 sing 358 n n 
C18 C19 PX4 sing 359 n n 
C18 H35 PX4 sing 360 n n 
C18 H36 PX4 sing 361 n n 
C19 C20 PX4 sing 362 n n 
C19 H37 PX4 sing 363 n n 
C19 H38 PX4 sing 364 n n 
C20 C21 PX4 sing 365 n n 
C20 H39 PX4 sing 366 n n 
C20 H40 PX4 sing 367 n n 
C21 C22 PX4 sing 368 n n 
C21 H41 PX4 sing 369 n n 
C21 H42 PX4 sing 370 n n 
C22 H43 PX4 sing 371 n n 
C22 H44 PX4 sing 372 n n 
C22 H45 PX4 sing 373 n n 
O7 C23 PX4 sing 374 n n 
C23 O8 PX4 doub 375 n n 
C23 C24 PX4 sing 376 n n 
C24 C25 PX4 sing 377 n n 
C24 H46 PX4 sing 378 n n 
C24 H47 PX4 sing 379 n n 
C25 C26 PX4 sing 380 n n 
C25 H48 PX4 sing 381 n n 
C25 H49 PX4 sing 382 n n 
C26 C27 PX4 sing 383 n n 
C26 H50 PX4 sing 384 n n 
C26 H51 PX4 sing 385 n n 
C27 C28 PX4 sing 386 n n 
C27 H52 PX4 sing 387 n n 
C27 H53 PX4 sing 388 n n 
C28 C29 PX4 sing 389 n n 
C28 H54 PX4 sing 390 n n 
C28 H55 PX4 sing 391 n n 
C29 C30 PX4 sing 392 n n 
C29 H56 PX4 sing 393 n n 
C29 H57 PX4 sing 394 n n 
C30 C31 PX4 sing 395 n n 
C30 H58 PX4 sing 396 n n 
C30 H59 PX4 sing 397 n n 
C31 C32 PX4 sing 398 n n 
C31 H60 PX4 sing 399 n n 
C31 H61 PX4 sing 400 n n 
C32 C33 PX4 sing 401 n n 
C32 H62 PX4 sing 402 n n 
C32 H63 PX4 sing 403 n n 
C33 C34 PX4 sing 404 n n 
C33 H64 PX4 sing 405 n n 
C33 H65 PX4 sing 406 n n 
C34 C35 PX4 sing 407 n n 
C34 H66 PX4 sing 408 n n 
C34 H67 PX4 sing 409 n n 
C35 C36 PX4 sing 410 n n 
C35 H68 PX4 sing 411 n n 
C35 H69 PX4 sing 412 n n 
C36 H70 PX4 sing 413 n n 
C36 H71 PX4 sing 414 n n 
C36 H72 PX4 sing 415 n n 
#
_atom_sites.entry_id                     9GNG 
_atom_sites.fract_transf_matrix[1][1]    0.010058 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001444 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017137 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015119 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MPD X 1 301 301 MPD MPD . 
C 3 PX4 X 1 302 500 PX4 MC3 . 
D 4 HOH X 1 401 509 HOH HOH . 
D 4 HOH X 2 402 518 HOH HOH . 
D 4 HOH X 3 403 511 HOH HOH . 
D 4 HOH X 4 404 505 HOH HOH . 
D 4 HOH X 5 405 543 HOH HOH . 
D 4 HOH X 6 406 526 HOH HOH . 
D 4 HOH X 7 407 516 HOH HOH . 
D 4 HOH X 8 408 501 HOH HOH . 
D 4 HOH X 9 409 517 HOH HOH . 
D 4 HOH X 10 410 512 HOH HOH . 
D 4 HOH X 11 411 506 HOH HOH . 
D 4 HOH X 12 412 513 HOH HOH . 
D 4 HOH X 13 413 547 HOH HOH . 
D 4 HOH X 14 414 546 HOH HOH . 
D 4 HOH X 15 415 522 HOH HOH . 
D 4 HOH X 16 416 503 HOH HOH . 
D 4 HOH X 17 417 6 HOH HOH . 
D 4 HOH X 18 418 529 HOH HOH . 
D 4 HOH X 19 419 521 HOH HOH . 
D 4 HOH X 20 420 502 HOH HOH . 
D 4 HOH X 21 421 542 HOH HOH . 
D 4 HOH X 22 422 520 HOH HOH . 
D 4 HOH X 23 423 532 HOH HOH . 
D 4 HOH X 24 424 1 HOH HOH . 
D 4 HOH X 25 425 538 HOH HOH . 
D 4 HOH X 26 426 504 HOH HOH . 
D 4 HOH X 27 427 508 HOH HOH . 
D 4 HOH X 28 428 539 HOH HOH . 
D 4 HOH X 29 429 7 HOH HOH . 
D 4 HOH X 30 430 525 HOH HOH . 
D 4 HOH X 31 431 533 HOH HOH . 
D 4 HOH X 32 432 528 HOH HOH . 
D 4 HOH X 33 433 523 HOH HOH . 
D 4 HOH X 34 434 514 HOH HOH . 
D 4 HOH X 35 435 537 HOH HOH . 
D 4 HOH X 36 436 11 HOH HOH . 
D 4 HOH X 37 437 527 HOH HOH . 
D 4 HOH X 38 438 530 HOH HOH . 
D 4 HOH X 39 439 545 HOH HOH . 
D 4 HOH X 40 440 8 HOH HOH . 
D 4 HOH X 41 441 540 HOH HOH . 
D 4 HOH X 42 442 534 HOH HOH . 
D 4 HOH X 43 443 535 HOH HOH . 
D 4 HOH X 44 444 519 HOH HOH . 
D 4 HOH X 45 445 544 HOH HOH . 
D 4 HOH X 46 446 2 HOH HOH . 
D 4 HOH X 47 447 541 HOH HOH . 
D 4 HOH X 48 448 524 HOH HOH . 
D 4 HOH X 49 449 3 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 PX4 . . . C 3 38.129 38.581 30.551 1 118.47 ? O1 PX4 302 X 1 
HETATM 2 O O2 PX4 . . . C 3 38.434 38.883 33.141 1 110.6 ? O2 PX4 302 X 1 
HETATM 3 P P1 PX4 . . . C 3 37.762 38.213 31.968 1 144.96 ? P1 PX4 302 X 1 
HETATM 4 O O4 PX4 . . . C 3 36.194 38.523 32.125 1 125.12 ? O4 PX4 302 X 1 
HETATM 5 C C6 PX4 . . . C 3 35.267 37.945 31.177 1 112.73 ? C6 PX4 302 X 1 
HETATM 6 C C7 PX4 . . . C 3 34.611 36.738 31.808 1 112.56 ? C7 PX4 302 X 1 
HETATM 7 C C8 PX4 . . . C 3 35.571 35.953 32.684 1 99.83 ? C8 PX4 302 X 1 
HETATM 8 O O7 PX4 . . . C 3 33.393 37.006 32.585 1 109.97 ? O7 PX4 302 X 1 
HETATM 9 C C23 PX4 . . . C 3 32.841 38.237 32.712 1 93.92 ? C23 PX4 302 X 1 
HETATM 10 O O8 PX4 . . . C 3 33.415 39.293 32.599 1 104.89 ? O8 PX4 302 X 1 
HETATM 11 C C24 PX4 . . . C 3 31.382 38.099 33.096 1 89.31 ? C24 PX4 302 X 1 
HETATM 12 C C25 PX4 . . . C 3 31.046 38.486 34.517 1 79.55 ? C25 PX4 302 X 1 
HETATM 13 C C26 PX4 . . . C 3 29.586 38.186 34.905 1 74.49 ? C26 PX4 302 X 1 
HETATM 14 C C27 PX4 . . . C 3 28.692 39.41 34.938 1 71.03 ? C27 PX4 302 X 1 
HETATM 15 C C28 PX4 . . . C 3 27.209 39.206 35.253 1 67.74 ? C28 PX4 302 X 1 
HETATM 16 C C29 PX4 . . . C 3 26.341 40.164 34.428 1 79.29 ? C29 PX4 302 X 1 
HETATM 17 C C30 PX4 . . . C 3 24.844 40.123 34.631 1 74.48 ? C30 PX4 302 X 1 
HETATM 18 C C31 PX4 . . . C 3 24.079 40.206 33.318 1 74.51 ? C31 PX4 302 X 1 
HETATM 19 C C32 PX4 . . . C 3 22.622 40.643 33.426 1 81.4 ? C32 PX4 302 X 1 
HETATM 20 C C33 PX4 . . . C 3 22.132 41.474 32.247 1 85.12 ? C33 PX4 302 X 1 
HETATM 21 C C34 PX4 . . . C 3 20.67 41.904 32.298 1 83.87 ? C34 PX4 302 X 1 
HETATM 22 C C35 PX4 . . . C 3 20.382 43.275 31.704 1 75.09 ? C35 PX4 302 X 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           22 
#