data_9GNN # _model_server_result.job_id tqBmmQ1ZImMYz3A02GVfhQ _model_server_result.datetime_utc '2025-08-21 03:05:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9gnn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":801}' # _entry.id 9GNN # _exptl.entry_id 9GNN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 57.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description prop-2-en-1-amine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9GNN _cell.length_a 66.162 _cell.length_b 87.902 _cell.length_c 116.676 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9GNN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,G,I 1 1 B,D,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 165 A CYS 713 1_555 E C2 AYE . A AYE 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.69 ? covale ? covale2 E N1 AYE . A AYE 801 1_555 C C GLY 79 C GLY 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale3 B SG CYS 165 B CYS 713 1_555 F C2 AYE . B AYE 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.679 ? covale ? covale4 F N1 AYE . B AYE 801 1_555 D C GLY 79 D GLY 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? # _chem_comp.formula 'C3 H7 N' _chem_comp.formula_weight 57.094 _chem_comp.id AYE _chem_comp.mon_nstd_flag . _chem_comp.name prop-2-en-1-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ALLYLAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 AYE doub 70 n n C2 C1 AYE sing 71 n n C1 N1 AYE sing 72 n n C2 H2 AYE sing 73 n n C3 H3 AYE sing 74 n n C3 H3A AYE sing 75 n n C1 H1 AYE sing 76 n n C1 H1A AYE sing 77 n n N1 HN1 AYE sing 78 n n N1 HN1A AYE sing 79 n n # _atom_sites.entry_id 9GNN _atom_sites.fract_transf_matrix[1][1] 0.015114 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011376 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008571 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 AYE A 1 801 101 AYE AYE . F 3 AYE B 1 801 101 AYE AYE . G 4 HOH A 1 901 801 HOH HOH . G 4 HOH A 2 902 802 HOH HOH . G 4 HOH A 3 903 803 HOH HOH . G 4 HOH A 4 904 804 HOH HOH . G 4 HOH A 5 905 805 HOH HOH . G 4 HOH A 6 906 806 HOH HOH . G 4 HOH A 7 907 807 HOH HOH . G 4 HOH A 8 908 808 HOH HOH . G 4 HOH A 9 909 809 HOH HOH . G 4 HOH A 10 910 810 HOH HOH . G 4 HOH A 11 911 811 HOH HOH . G 4 HOH A 12 912 812 HOH HOH . G 4 HOH A 13 913 813 HOH HOH . H 4 HOH B 1 901 801 HOH HOH . H 4 HOH B 2 902 802 HOH HOH . H 4 HOH B 3 903 803 HOH HOH . H 4 HOH B 4 904 804 HOH HOH . H 4 HOH B 5 905 805 HOH HOH . H 4 HOH B 6 906 806 HOH HOH . H 4 HOH B 7 907 807 HOH HOH . H 4 HOH B 8 908 808 HOH HOH . I 4 HOH C 1 201 201 HOH HOH . I 4 HOH C 2 202 202 HOH HOH . I 4 HOH C 3 203 203 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 AYE . . . F 3 12.945 1.875 -14.315 1 40.9 ? C2 AYE 801 B 1 HETATM 2 C C3 AYE . . . F 3 13.381 2.979 -14.886 1 39.12 ? C3 AYE 801 B 1 HETATM 3 C C1 AYE . . . F 3 13.872 1.043 -13.435 1 35.37 ? C1 AYE 801 B 1 HETATM 4 N N1 AYE . . . F 3 13.48 -0.352 -13.544 1 37.87 ? N1 AYE 801 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #