data_9GO2 # _model_server_result.job_id ksK0-DjnNoDgqS6Pn5I5TQ _model_server_result.datetime_utc '2025-01-30 20:16:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9go2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 9GO2 # _exptl.entry_id 9GO2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9GO2 _cell.length_a 61.4 _cell.length_b 141.7 _cell.length_c 94.4 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9GO2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 47.2 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 43 A CYS 373 1_555 A SG CYS 43 A CYS 373 3_555 ? A ? ? A ? ? ? ? ? ? ? 2.048 ? disulf ? disulf2 A SG CYS 43 A CYS 373 1_555 A SG CYS 43 A CYS 373 3_555 ? B ? ? B ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 A SG CYS 50 A CYS 380 1_555 A SG CYS 52 A CYS 382 3_555 ? A ? ? A ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 50 A CYS 380 1_555 A SG CYS 52 A CYS 382 3_555 ? B ? ? B ? ? ? ? ? ? ? 2.028 ? covale ? covale1 A NZ LYS 273 A LYS 603 1_555 K C15 RET . A RET 710 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A NZ LYS 273 A LYS 603 1_555 K C15 RET . A RET 710 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.34 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 237 n n C10 C9 OLC doub 238 n n C10 C11 OLC sing 239 n n C9 C8 OLC sing 240 n n C17 C16 OLC sing 241 z n C11 C12 OLC sing 242 n n C8 C7 OLC sing 243 n n C24 C22 OLC sing 244 n n C24 O25 OLC sing 245 n n C16 C15 OLC sing 246 n n C12 C13 OLC sing 247 n n C7 C6 OLC sing 248 n n C15 C14 OLC sing 249 n n C13 C14 OLC sing 250 n n C6 C5 OLC sing 251 n n C5 C4 OLC sing 252 n n C4 C3 OLC sing 253 n n C3 C2 OLC sing 254 n n C2 C1 OLC sing 255 n n C21 C22 OLC sing 256 n n C21 O20 OLC sing 257 n n C1 O19 OLC doub 258 n n C1 O20 OLC sing 259 n n C22 O23 OLC sing 260 n n C18 H18 OLC sing 261 n n C18 H18A OLC sing 262 n n C18 H18B OLC sing 263 n n C10 H10 OLC sing 264 n n C9 H9 OLC sing 265 n n C17 H17 OLC sing 266 n n C17 H17A OLC sing 267 n n C11 H11 OLC sing 268 n n C11 H11A OLC sing 269 n n C8 H8 OLC sing 270 n n C8 H8A OLC sing 271 n n C24 H24 OLC sing 272 n n C24 H24A OLC sing 273 n n C16 H16 OLC sing 274 n n C16 H16A OLC sing 275 n n C12 H12 OLC sing 276 n n C12 H12A OLC sing 277 n n C7 H7 OLC sing 278 n n C7 H7A OLC sing 279 n n C15 H15 OLC sing 280 n n C15 H15A OLC sing 281 n n C13 H13 OLC sing 282 n n C13 H13A OLC sing 283 n n C6 H6 OLC sing 284 n n C6 H6A OLC sing 285 n n C14 H14 OLC sing 286 n n C14 H14A OLC sing 287 n n C5 H5 OLC sing 288 n n C5 H5A OLC sing 289 n n C4 H4 OLC sing 290 n n C4 H4A OLC sing 291 n n C3 H3 OLC sing 292 n n C3 H3A OLC sing 293 n n C2 H2 OLC sing 294 n n C2 H2A OLC sing 295 n n C21 H21 OLC sing 296 n n C21 H21A OLC sing 297 n n C22 H22 OLC sing 298 n n O25 HO25 OLC sing 299 n n O23 HO23 OLC sing 300 n n # _atom_sites.entry_id 9GO2 _atom_sites.fract_transf_matrix[1][1] 0.016287 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007057 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010593 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OLC A 1 701 402 OLC OLC . C 2 OLC A 1 702 403 OLC OLC . D 2 OLC A 1 703 404 OLC OLC . E 2 OLC A 1 704 405 OLC OLC . F 2 OLC A 1 705 406 OLC OLC . G 2 OLC A 1 706 407 OLC OLC . H 2 OLC A 1 707 408 OLC OLC . I 2 OLC A 1 708 409 OLC OLC . J 2 OLC A 1 709 410 OLC OLC . K 3 RET A 1 710 296 RET LYR . L 4 HOH A 1 801 2 HOH HOH . L 4 HOH A 2 802 3 HOH HOH . L 4 HOH A 3 803 4 HOH HOH . L 4 HOH A 4 804 6 HOH HOH . L 4 HOH A 5 805 14 HOH HOH . L 4 HOH A 6 806 9 HOH HOH . L 4 HOH A 7 807 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . B 2 -1.771 38.522 5.879 1 57.43 ? C18 OLC 701 A 1 HETATM 2 C C10 OLC . . . B 2 -3.3 33.314 2.811 1 78.01 ? C10 OLC 701 A 1 HETATM 3 C C9 OLC . . . B 2 -4.254 32.808 2.01 1 78.74 ? C9 OLC 701 A 1 HETATM 4 C C17 OLC . . . B 2 -2.624 39.682 5.321 1 62.87 ? C17 OLC 701 A 1 HETATM 5 C C11 OLC . . . B 2 -2.056 33.788 2.017 1 71.82 ? C11 OLC 701 A 1 HETATM 6 C C8 OLC . . . B 2 -5.645 32.163 1.747 1 76.29 ? C8 OLC 701 A 1 HETATM 7 C C24 OLC . . . B 2 -5.622 20.807 6.369 1 182.56 ? C24 OLC 701 A 1 HETATM 8 C C16 OLC . . . B 2 -2.768 39.529 3.785 1 79.14 ? C16 OLC 701 A 1 HETATM 9 C C12 OLC . . . B 2 -1.44 35.04 2.706 1 72.38 ? C12 OLC 701 A 1 HETATM 10 C C7 OLC . . . B 2 -6.193 31.527 3.051 1 72.22 ? C7 OLC 701 A 1 HETATM 11 C C15 OLC . . . B 2 -3.555 38.234 3.455 1 76.63 ? C15 OLC 701 A 1 HETATM 12 C C13 OLC . . . B 2 -2.578 35.902 3.322 1 78.43 ? C13 OLC 701 A 1 HETATM 13 C C6 OLC . . . B 2 -6.141 29.975 2.944 1 83.59 ? C6 OLC 701 A 1 HETATM 14 C C14 OLC . . . B 2 -2.673 37.279 2.604 1 86.04 ? C14 OLC 701 A 1 HETATM 15 C C5 OLC . . . B 2 -7.167 29.355 3.935 1 68.05 ? C5 OLC 701 A 1 HETATM 16 C C4 OLC . . . B 2 -6.962 27.814 4.001 1 56.8 ? C4 OLC 701 A 1 HETATM 17 C C3 OLC . . . B 2 -6.251 27.458 5.336 1 82.26 ? C3 OLC 701 A 1 HETATM 18 C C2 OLC . . . B 2 -6.881 26.175 5.94 1 93.24 ? C2 OLC 701 A 1 HETATM 19 C C21 OLC . . . B 2 -6.427 23.062 7.144 1 118.78 ? C21 OLC 701 A 1 HETATM 20 C C1 OLC . . . B 2 -5.755 25.211 6.384 1 113.32 ? C1 OLC 701 A 1 HETATM 21 C C22 OLC . . . B 2 -6.857 21.677 6.635 1 144.53 ? C22 OLC 701 A 1 HETATM 22 O O19 OLC . . . B 2 -4.806 25.636 6.965 1 86.78 ? O19 OLC 701 A 1 HETATM 23 O O25 OLC . . . B 2 -5.902 19.881 5.341 1 199.43 ? O25 OLC 701 A 1 HETATM 24 O O23 OLC . . . B 2 -7.66 21.061 7.6 1 95.87 ? O23 OLC 701 A 1 HETATM 25 O O20 OLC . . . B 2 -5.855 23.826 6.098 1 154.11 ? O20 OLC 701 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 25 #