data_9GO2 # _model_server_result.job_id 587IB8qixLHgnikuhn2oXg _model_server_result.datetime_utc '2025-01-30 20:17:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9go2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":710}' # _entry.id 9GO2 # _exptl.entry_id 9GO2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9GO2 _cell.length_a 61.4 _cell.length_b 141.7 _cell.length_c 94.4 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9GO2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 47.2 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 43 A CYS 373 1_555 A SG CYS 43 A CYS 373 3_555 ? A ? ? A ? ? ? ? ? ? ? 2.048 ? disulf ? disulf2 A SG CYS 43 A CYS 373 1_555 A SG CYS 43 A CYS 373 3_555 ? B ? ? B ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 A SG CYS 50 A CYS 380 1_555 A SG CYS 52 A CYS 382 3_555 ? A ? ? A ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 50 A CYS 380 1_555 A SG CYS 52 A CYS 382 3_555 ? B ? ? B ? ? ? ? ? ? ? 2.028 ? covale ? covale1 A NZ LYS 273 A LYS 603 1_555 K C15 RET . A RET 710 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A NZ LYS 273 A LYS 603 1_555 K C15 RET . A RET 710 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.34 ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 341 n n C1 C6 RET sing 342 n n C1 C16 RET sing 343 n n C1 C17 RET sing 344 n n C2 C3 RET sing 345 n n C2 H21 RET sing 346 n n C2 H22 RET sing 347 n n C3 C4 RET sing 348 n n C3 H31 RET sing 349 n n C3 H32 RET sing 350 n n C4 C5 RET sing 351 n n C4 H41 RET sing 352 n n C4 H42 RET sing 353 n n C5 C6 RET doub 354 n n C5 C18 RET sing 355 n n C6 C7 RET sing 356 n n C7 C8 RET doub 357 e n C7 H7 RET sing 358 n n C8 C9 RET sing 359 n n C8 H8 RET sing 360 n n C9 C10 RET doub 361 e n C9 C19 RET sing 362 n n C10 C11 RET sing 363 n n C10 H10 RET sing 364 n n C11 C12 RET doub 365 e n C11 H11 RET sing 366 n n C12 C13 RET sing 367 n n C12 H12 RET sing 368 n n C13 C14 RET doub 369 e n C13 C20 RET sing 370 n n C14 C15 RET sing 371 n n C14 H14 RET sing 372 n n C15 O1 RET doub 373 n n C15 H15 RET sing 374 n n C16 H161 RET sing 375 n n C16 H162 RET sing 376 n n C16 H163 RET sing 377 n n C17 H171 RET sing 378 n n C17 H172 RET sing 379 n n C17 H173 RET sing 380 n n C18 H181 RET sing 381 n n C18 H182 RET sing 382 n n C18 H183 RET sing 383 n n C19 H191 RET sing 384 n n C19 H192 RET sing 385 n n C19 H193 RET sing 386 n n C20 H201 RET sing 387 n n C20 H202 RET sing 388 n n C20 H203 RET sing 389 n n # _atom_sites.entry_id 9GO2 _atom_sites.fract_transf_matrix[1][1] 0.016287 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007057 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010593 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OLC A 1 701 402 OLC OLC . C 2 OLC A 1 702 403 OLC OLC . D 2 OLC A 1 703 404 OLC OLC . E 2 OLC A 1 704 405 OLC OLC . F 2 OLC A 1 705 406 OLC OLC . G 2 OLC A 1 706 407 OLC OLC . H 2 OLC A 1 707 408 OLC OLC . I 2 OLC A 1 708 409 OLC OLC . J 2 OLC A 1 709 410 OLC OLC . K 3 RET A 1 710 296 RET LYR . L 4 HOH A 1 801 2 HOH HOH . L 4 HOH A 2 802 3 HOH HOH . L 4 HOH A 3 803 4 HOH HOH . L 4 HOH A 4 804 6 HOH HOH . L 4 HOH A 5 805 14 HOH HOH . L 4 HOH A 6 806 9 HOH HOH . L 4 HOH A 7 807 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . A . K 3 -0.654 33.413 11.015 0.7 50.43 ? C1 RET 710 A 1 HETATM 2 C C1 RET . B . K 3 -0.535 33.194 11.103 0.3 50.5 ? C1 RET 710 A 1 HETATM 3 C C2 RET . A . K 3 -1.869 32.548 10.639 0.7 52.86 ? C2 RET 710 A 1 HETATM 4 C C2 RET . B . K 3 -1.612 32.144 10.778 0.3 52.95 ? C2 RET 710 A 1 HETATM 5 C C3 RET . A . K 3 -3.185 33.31 10.687 0.7 47.77 ? C3 RET 710 A 1 HETATM 6 C C3 RET . B . K 3 -3.032 32.692 10.809 0.3 49.48 ? C3 RET 710 A 1 HETATM 7 C C4 RET . A . K 3 -3.15 34.476 9.722 0.7 51.63 ? C4 RET 710 A 1 HETATM 8 C C4 RET . B . K 3 -3.194 33.828 9.815 0.3 51.48 ? C4 RET 710 A 1 HETATM 9 C C5 RET . A . K 3 -1.858 35.25 9.753 0.7 52.81 ? C5 RET 710 A 1 HETATM 10 C C5 RET . B . K 3 -2.008 34.753 9.766 0.3 52.13 ? C5 RET 710 A 1 HETATM 11 C C6 RET . A . K 3 -0.779 34.833 10.436 0.7 53.88 ? C6 RET 710 A 1 HETATM 12 C C6 RET . B . K 3 -0.924 34.567 10.537 0.3 53.49 ? C6 RET 710 A 1 HETATM 13 C C7 RET . A . K 3 0.352 35.794 10.646 0.7 52.89 ? C7 RET 710 A 1 HETATM 14 C C7 RET . B . K 3 -0.055 35.728 10.872 0.3 53.79 ? C7 RET 710 A 1 HETATM 15 C C8 RET . A . K 3 1.506 35.708 11.311 0.7 52.62 ? C8 RET 710 A 1 HETATM 16 C C8 RET . B . K 3 1.196 35.831 11.328 0.3 52.99 ? C8 RET 710 A 1 HETATM 17 C C9 RET . A . K 3 2.526 36.737 11.43 0.7 52.18 ? C9 RET 710 A 1 HETATM 18 C C9 RET . B . K 3 1.905 37.069 11.605 0.3 48.91 ? C9 RET 710 A 1 HETATM 19 C C10 RET . A . K 3 3.652 36.464 12.133 0.7 51.59 ? C10 RET 710 A 1 HETATM 20 C C10 RET . B . K 3 3.177 37.021 12.073 0.3 47.74 ? C10 RET 710 A 1 HETATM 21 C C11 RET . A . K 3 4.781 37.316 12.354 0.7 39.68 ? C11 RET 710 A 1 HETATM 22 C C11 RET . B . K 3 4.021 38.129 12.396 0.3 41.3 ? C11 RET 710 A 1 HETATM 23 C C12 RET . A . K 3 5.843 36.925 13.074 0.7 47.25 ? C12 RET 710 A 1 HETATM 24 C C12 RET . B . K 3 5.278 38.044 12.861 0.3 45.79 ? C12 RET 710 A 1 HETATM 25 C C13 RET . A . K 3 7.043 37.691 13.369 0.7 45.02 ? C13 RET 710 A 1 HETATM 26 C C13 RET . B . K 3 6.134 39.171 13.188 0.3 55.4 ? C13 RET 710 A 1 HETATM 27 C C14 RET . A . K 3 7.991 37.144 14.168 0.7 50.48 ? C14 RET 710 A 1 HETATM 28 C C14 RET . B . K 3 7.383 38.968 13.668 0.3 49.5 ? C14 RET 710 A 1 HETATM 29 C C15 RET . A . K 3 9.242 37.745 14.668 0.7 52.43 ? C15 RET 710 A 1 HETATM 30 C C15 RET . B . K 3 8.196 37.806 13.97 0.3 49.19 ? C15 RET 710 A 1 HETATM 31 C C16 RET . A . K 3 -0.589 33.444 12.547 0.7 36.09 ? C16 RET 710 A 1 HETATM 32 C C16 RET . B . K 3 -0.385 33.251 12.628 0.3 37.7 ? C16 RET 710 A 1 HETATM 33 C C17 RET . A . K 3 0.589 32.696 10.472 0.7 56.76 ? C17 RET 710 A 1 HETATM 34 C C17 RET . B . K 3 0.777 32.696 10.484 0.3 55.85 ? C17 RET 710 A 1 HETATM 35 C C18 RET . A . K 3 -1.918 36.519 8.951 0.7 57.53 ? C18 RET 710 A 1 HETATM 36 C C18 RET . B . K 3 -2.171 35.88 8.785 0.3 53.84 ? C18 RET 710 A 1 HETATM 37 C C19 RET . A . K 3 2.285 38.056 10.751 0.7 56.86 ? C19 RET 710 A 1 HETATM 38 C C19 RET . B . K 3 1.18 38.362 11.358 0.3 45.58 ? C19 RET 710 A 1 HETATM 39 C C20 RET . A . K 3 7.15 39.079 12.806 0.7 57.41 ? C20 RET 710 A 1 HETATM 40 C C20 RET . B . K 3 5.575 40.546 12.988 0.3 45.24 ? C20 RET 710 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 40 #