data_9GP4 # _model_server_result.job_id kIItjB3xGVLaNwmWAaC-oQ _model_server_result.datetime_utc '2025-03-04 14:47:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9gp4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 9GP4 # _exptl.entry_id 9GP4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9GP4 _cell.length_a 136.1 _cell.length_b 136.1 _cell.length_c 136.1 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9GP4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 214 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 9GP4 _atom_sites.fract_transf_matrix[1][1] 0.007348 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007348 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007348 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 201 1 EDO EDO . C 2 EDO A 1 202 2 EDO EDO . D 2 EDO A 1 203 3 EDO EDO . E 2 EDO A 1 204 4 EDO EDO . F 2 EDO A 1 205 5 EDO EDO . G 3 SO4 A 1 206 1 SO4 SO4 . H 3 SO4 A 1 207 2 SO4 SO4 . I 4 HOH A 1 301 103 HOH HOH . I 4 HOH A 2 302 132 HOH HOH . I 4 HOH A 3 303 39 HOH HOH . I 4 HOH A 4 304 142 HOH HOH . I 4 HOH A 5 305 98 HOH HOH . I 4 HOH A 6 306 154 HOH HOH . I 4 HOH A 7 307 33 HOH HOH . I 4 HOH A 8 308 160 HOH HOH . I 4 HOH A 9 309 63 HOH HOH . I 4 HOH A 10 310 74 HOH HOH . I 4 HOH A 11 311 141 HOH HOH . I 4 HOH A 12 312 17 HOH HOH . I 4 HOH A 13 313 28 HOH HOH . I 4 HOH A 14 314 94 HOH HOH . I 4 HOH A 15 315 37 HOH HOH . I 4 HOH A 16 316 79 HOH HOH . I 4 HOH A 17 317 55 HOH HOH . I 4 HOH A 18 318 180 HOH HOH . I 4 HOH A 19 319 46 HOH HOH . I 4 HOH A 20 320 35 HOH HOH . I 4 HOH A 21 321 133 HOH HOH . I 4 HOH A 22 322 72 HOH HOH . I 4 HOH A 23 323 177 HOH HOH . I 4 HOH A 24 324 18 HOH HOH . I 4 HOH A 25 325 5 HOH HOH . I 4 HOH A 26 326 181 HOH HOH . I 4 HOH A 27 327 58 HOH HOH . I 4 HOH A 28 328 4 HOH HOH . I 4 HOH A 29 329 14 HOH HOH . I 4 HOH A 30 330 19 HOH HOH . I 4 HOH A 31 331 34 HOH HOH . I 4 HOH A 32 332 53 HOH HOH . I 4 HOH A 33 333 20 HOH HOH . I 4 HOH A 34 334 25 HOH HOH . I 4 HOH A 35 335 32 HOH HOH . I 4 HOH A 36 336 29 HOH HOH . I 4 HOH A 37 337 44 HOH HOH . I 4 HOH A 38 338 30 HOH HOH . I 4 HOH A 39 339 31 HOH HOH . I 4 HOH A 40 340 1 HOH HOH . I 4 HOH A 41 341 9 HOH HOH . I 4 HOH A 42 342 6 HOH HOH . I 4 HOH A 43 343 12 HOH HOH . I 4 HOH A 44 344 45 HOH HOH . I 4 HOH A 45 345 73 HOH HOH . I 4 HOH A 46 346 11 HOH HOH . I 4 HOH A 47 347 66 HOH HOH . I 4 HOH A 48 348 57 HOH HOH . I 4 HOH A 49 349 43 HOH HOH . I 4 HOH A 50 350 62 HOH HOH . I 4 HOH A 51 351 80 HOH HOH . I 4 HOH A 52 352 101 HOH HOH . I 4 HOH A 53 353 24 HOH HOH . I 4 HOH A 54 354 64 HOH HOH . I 4 HOH A 55 355 61 HOH HOH . I 4 HOH A 56 356 162 HOH HOH . I 4 HOH A 57 357 54 HOH HOH . I 4 HOH A 58 358 161 HOH HOH . I 4 HOH A 59 359 75 HOH HOH . I 4 HOH A 60 360 40 HOH HOH . I 4 HOH A 61 361 69 HOH HOH . I 4 HOH A 62 362 77 HOH HOH . I 4 HOH A 63 363 92 HOH HOH . I 4 HOH A 64 364 8 HOH HOH . I 4 HOH A 65 365 47 HOH HOH . I 4 HOH A 66 366 42 HOH HOH . I 4 HOH A 67 367 97 HOH HOH . I 4 HOH A 68 368 71 HOH HOH . I 4 HOH A 69 369 65 HOH HOH . I 4 HOH A 70 370 129 HOH HOH . I 4 HOH A 71 371 3 HOH HOH . I 4 HOH A 72 372 91 HOH HOH . I 4 HOH A 73 373 81 HOH HOH . I 4 HOH A 74 374 138 HOH HOH . I 4 HOH A 75 375 26 HOH HOH . I 4 HOH A 76 376 56 HOH HOH . I 4 HOH A 77 377 41 HOH HOH . I 4 HOH A 78 378 108 HOH HOH . I 4 HOH A 79 379 22 HOH HOH . I 4 HOH A 80 380 36 HOH HOH . I 4 HOH A 81 381 60 HOH HOH . I 4 HOH A 82 382 2 HOH HOH . I 4 HOH A 83 383 70 HOH HOH . I 4 HOH A 84 384 82 HOH HOH . I 4 HOH A 85 385 100 HOH HOH . I 4 HOH A 86 386 95 HOH HOH . I 4 HOH A 87 387 50 HOH HOH . I 4 HOH A 88 388 13 HOH HOH . I 4 HOH A 89 389 1 HOH HOH . I 4 HOH A 90 390 155 HOH HOH . I 4 HOH A 91 391 86 HOH HOH . I 4 HOH A 92 392 150 HOH HOH . I 4 HOH A 93 393 106 HOH HOH . I 4 HOH A 94 394 110 HOH HOH . I 4 HOH A 95 395 131 HOH HOH . I 4 HOH A 96 396 145 HOH HOH . I 4 HOH A 97 397 112 HOH HOH . I 4 HOH A 98 398 99 HOH HOH . I 4 HOH A 99 399 156 HOH HOH . I 4 HOH A 100 400 49 HOH HOH . I 4 HOH A 101 401 88 HOH HOH . I 4 HOH A 102 402 111 HOH HOH . I 4 HOH A 103 403 87 HOH HOH . I 4 HOH A 104 404 38 HOH HOH . I 4 HOH A 105 405 7 HOH HOH . I 4 HOH A 106 406 85 HOH HOH . I 4 HOH A 107 407 115 HOH HOH . I 4 HOH A 108 408 114 HOH HOH . I 4 HOH A 109 409 139 HOH HOH . I 4 HOH A 110 410 140 HOH HOH . I 4 HOH A 111 411 90 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 2 -22.511 9.703 13.201 1 51.1 ? C1 EDO 203 A 1 HETATM 2 O O1 EDO . . . D 2 -22.336 10.271 14.512 1 59.27 ? O1 EDO 203 A 1 HETATM 3 C C2 EDO . . . D 2 -23.512 8.571 13.132 1 49.16 ? C2 EDO 203 A 1 HETATM 4 O O2 EDO . . . D 2 -24.81 8.827 12.595 1 50.2 ? O2 EDO 203 A 1 HETATM 5 H H11 EDO . . . D 2 -21.652 9.361 12.899 1 51.35 ? H11 EDO 203 A 1 HETATM 6 H H12 EDO . . . D 2 -22.782 10.406 12.58 1 51.94 ? H12 EDO 203 A 1 HETATM 7 H H21 EDO . . . D 2 -23.625 8.215 14.038 1 49.28 ? H21 EDO 203 A 1 HETATM 8 H H22 EDO . . . D 2 -23.106 7.867 12.594 1 48.29 ? H22 EDO 203 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #