data_9GPB # _model_server_result.job_id 8gcRAyxD1dcWTbPapwvDVw _model_server_result.datetime_utc '2024-11-27 09:10:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9gpb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":900}' # _entry.id 9GPB # _exptl.entry_id 9GPB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.35 _cell.angle_gamma 90 _cell.entry_id 9GPB _cell.length_a 119 _cell.length_b 190 _cell.length_c 88.2 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9GPB _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 Q N N ? 2 R N N ? 2 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 680 A LYS 680 1_555 H C4A PLP . A PLP 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale2 B CD ARG 569 B ARG 569 1_555 J O4 SO4 . B SO4 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? covale ? covale3 B NE ARG 569 B ARG 569 1_555 J O4 SO4 . B SO4 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.287 ? covale ? covale4 B NZ LYS 680 B LYS 680 1_555 L C4A PLP . B PLP 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.365 ? covale ? covale5 C NZ LYS 680 C LYS 680 1_555 P C4A PLP . C PLP 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.364 ? covale ? covale6 D NH2 ARG 43 D ARG 43 1_555 M O3 SO4 . C SO4 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.795 ? covale ? covale7 D NZ LYS 680 D LYS 680 1_555 T C4A PLP . D PLP 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.363 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 9GPB _atom_sites.fract_transf_matrix[1][1] 0.008403 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002951 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005263 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012017 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SO4 A 1 900 900 SO4 SO4 . F 2 SO4 A 1 901 901 SO4 SO4 . G 2 SO4 A 1 902 902 SO4 SO4 . H 3 PLP A 1 999 999 PLP PLP . I 2 SO4 B 1 900 900 SO4 SO4 . J 2 SO4 B 1 901 901 SO4 SO4 . K 2 SO4 B 1 902 902 SO4 SO4 . L 3 PLP B 1 999 999 PLP PLP . M 2 SO4 C 1 900 900 SO4 SO4 . N 2 SO4 C 1 901 901 SO4 SO4 . O 2 SO4 C 1 902 902 SO4 SO4 . P 3 PLP C 1 999 999 PLP PLP . Q 2 SO4 D 1 900 900 SO4 SO4 . R 2 SO4 D 1 901 901 SO4 SO4 . S 2 SO4 D 1 902 902 SO4 SO4 . T 3 PLP D 1 999 999 PLP PLP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . I 2 44.686 -12.412 71.627 1 42.67 ? S SO4 900 B 1 HETATM 2 O O1 SO4 . . . I 2 44.906 -11.53 72.789 1 38.49 ? O1 SO4 900 B 1 HETATM 3 O O2 SO4 . . . I 2 43.302 -12.908 71.656 1 42.79 ? O2 SO4 900 B 1 HETATM 4 O O3 SO4 . . . I 2 45.713 -13.482 71.605 1 39.93 ? O3 SO4 900 B 1 HETATM 5 O O4 SO4 . . . I 2 44.853 -11.688 70.342 1 43.44 ? O4 SO4 900 B 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 117 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #