data_9GPY # _model_server_result.job_id n1xutmILeqh55yyoKB6b8g _model_server_result.datetime_utc '2025-01-18 06:55:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9gpy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":202}' # _entry.id 9GPY # _exptl.entry_id 9GPY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.259 _cell.angle_gamma 90 _cell.entry_id 9GPY _cell.length_a 84.589 _cell.length_b 48.797 _cell.length_c 99.904 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9GPY _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,J 1 1 B,F,G,K 2 1 C,H,I,L 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N ? 3 I N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 172 n n C1 C2 EDO sing 173 n n C1 H11 EDO sing 174 n n C1 H12 EDO sing 175 n n O1 HO1 EDO sing 176 n n C2 O2 EDO sing 177 n n C2 H21 EDO sing 178 n n C2 H22 EDO sing 179 n n O2 HO2 EDO sing 180 n n # _atom_sites.entry_id 9GPY _atom_sites.fract_transf_matrix[1][1] 0.011822 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004599 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020493 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01074 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 A1INZ A 1 201 201 A1INZ DRG . E 3 EDO A 1 202 202 EDO EDO . F 2 A1INZ B 1 201 201 A1INZ DRG . G 3 EDO B 1 202 202 EDO EDO . H 2 A1INZ C 1 201 201 A1INZ DRG . I 3 EDO C 1 202 202 EDO EDO . J 4 HOH A 1 301 264 HOH HOH . J 4 HOH A 2 302 288 HOH HOH . J 4 HOH A 3 303 38 HOH HOH . J 4 HOH A 4 304 63 HOH HOH . J 4 HOH A 5 305 199 HOH HOH . J 4 HOH A 6 306 7 HOH HOH . J 4 HOH A 7 307 111 HOH HOH . J 4 HOH A 8 308 58 HOH HOH . J 4 HOH A 9 309 4 HOH HOH . J 4 HOH A 10 310 48 HOH HOH . J 4 HOH A 11 311 11 HOH HOH . J 4 HOH A 12 312 241 HOH HOH . J 4 HOH A 13 313 265 HOH HOH . J 4 HOH A 14 314 22 HOH HOH . J 4 HOH A 15 315 24 HOH HOH . J 4 HOH A 16 316 160 HOH HOH . J 4 HOH A 17 317 244 HOH HOH . J 4 HOH A 18 318 79 HOH HOH . J 4 HOH A 19 319 95 HOH HOH . J 4 HOH A 20 320 143 HOH HOH . J 4 HOH A 21 321 67 HOH HOH . J 4 HOH A 22 322 30 HOH HOH . J 4 HOH A 23 323 258 HOH HOH . J 4 HOH A 24 324 197 HOH HOH . J 4 HOH A 25 325 85 HOH HOH . J 4 HOH A 26 326 165 HOH HOH . J 4 HOH A 27 327 132 HOH HOH . J 4 HOH A 28 328 185 HOH HOH . J 4 HOH A 29 329 66 HOH HOH . J 4 HOH A 30 330 19 HOH HOH . J 4 HOH A 31 331 173 HOH HOH . J 4 HOH A 32 332 75 HOH HOH . J 4 HOH A 33 333 164 HOH HOH . J 4 HOH A 34 334 171 HOH HOH . J 4 HOH A 35 335 45 HOH HOH . J 4 HOH A 36 336 21 HOH HOH . J 4 HOH A 37 337 242 HOH HOH . J 4 HOH A 38 338 119 HOH HOH . J 4 HOH A 39 339 78 HOH HOH . J 4 HOH A 40 340 240 HOH HOH . J 4 HOH A 41 341 163 HOH HOH . J 4 HOH A 42 342 221 HOH HOH . J 4 HOH A 43 343 271 HOH HOH . J 4 HOH A 44 344 80 HOH HOH . J 4 HOH A 45 345 190 HOH HOH . J 4 HOH A 46 346 101 HOH HOH . J 4 HOH A 47 347 246 HOH HOH . J 4 HOH A 48 348 107 HOH HOH . J 4 HOH A 49 349 180 HOH HOH . J 4 HOH A 50 350 61 HOH HOH . J 4 HOH A 51 351 256 HOH HOH . J 4 HOH A 52 352 192 HOH HOH . J 4 HOH A 53 353 189 HOH HOH . J 4 HOH A 54 354 277 HOH HOH . J 4 HOH A 55 355 62 HOH HOH . J 4 HOH A 56 356 172 HOH HOH . J 4 HOH A 57 357 44 HOH HOH . J 4 HOH A 58 358 136 HOH HOH . J 4 HOH A 59 359 100 HOH HOH . J 4 HOH A 60 360 109 HOH HOH . J 4 HOH A 61 361 15 HOH HOH . J 4 HOH A 62 362 270 HOH HOH . J 4 HOH A 63 363 131 HOH HOH . J 4 HOH A 64 364 72 HOH HOH . J 4 HOH A 65 365 248 HOH HOH . J 4 HOH A 66 366 220 HOH HOH . J 4 HOH A 67 367 300 HOH HOH . J 4 HOH A 68 368 183 HOH HOH . J 4 HOH A 69 369 254 HOH HOH . J 4 HOH A 70 370 146 HOH HOH . J 4 HOH A 71 371 284 HOH HOH . J 4 HOH A 72 372 247 HOH HOH . J 4 HOH A 73 373 133 HOH HOH . J 4 HOH A 74 374 123 HOH HOH . J 4 HOH A 75 375 297 HOH HOH . J 4 HOH A 76 376 141 HOH HOH . J 4 HOH A 77 377 51 HOH HOH . J 4 HOH A 78 378 104 HOH HOH . J 4 HOH A 79 379 102 HOH HOH . J 4 HOH A 80 380 250 HOH HOH . J 4 HOH A 81 381 176 HOH HOH . J 4 HOH A 82 382 226 HOH HOH . J 4 HOH A 83 383 149 HOH HOH . J 4 HOH A 84 384 294 HOH HOH . J 4 HOH A 85 385 253 HOH HOH . J 4 HOH A 86 386 282 HOH HOH . J 4 HOH A 87 387 289 HOH HOH . J 4 HOH A 88 388 105 HOH HOH . J 4 HOH A 89 389 230 HOH HOH . K 4 HOH B 1 301 175 HOH HOH . K 4 HOH B 2 302 90 HOH HOH . K 4 HOH B 3 303 210 HOH HOH . K 4 HOH B 4 304 12 HOH HOH . K 4 HOH B 5 305 32 HOH HOH . K 4 HOH B 6 306 129 HOH HOH . K 4 HOH B 7 307 120 HOH HOH . K 4 HOH B 8 308 273 HOH HOH . K 4 HOH B 9 309 186 HOH HOH . K 4 HOH B 10 310 50 HOH HOH . K 4 HOH B 11 311 25 HOH HOH . K 4 HOH B 12 312 218 HOH HOH . K 4 HOH B 13 313 162 HOH HOH . K 4 HOH B 14 314 49 HOH HOH . K 4 HOH B 15 315 168 HOH HOH . K 4 HOH B 16 316 65 HOH HOH . K 4 HOH B 17 317 269 HOH HOH . K 4 HOH B 18 318 150 HOH HOH . K 4 HOH B 19 319 1 HOH HOH . K 4 HOH B 20 320 155 HOH HOH . K 4 HOH B 21 321 91 HOH HOH . K 4 HOH B 22 322 198 HOH HOH . K 4 HOH B 23 323 13 HOH HOH . K 4 HOH B 24 324 42 HOH HOH . K 4 HOH B 25 325 28 HOH HOH . K 4 HOH B 26 326 87 HOH HOH . K 4 HOH B 27 327 14 HOH HOH . K 4 HOH B 28 328 125 HOH HOH . K 4 HOH B 29 329 26 HOH HOH . K 4 HOH B 30 330 74 HOH HOH . K 4 HOH B 31 331 128 HOH HOH . K 4 HOH B 32 332 41 HOH HOH . K 4 HOH B 33 333 83 HOH HOH . K 4 HOH B 34 334 272 HOH HOH . K 4 HOH B 35 335 222 HOH HOH . K 4 HOH B 36 336 60 HOH HOH . K 4 HOH B 37 337 182 HOH HOH . K 4 HOH B 38 338 64 HOH HOH . K 4 HOH B 39 339 115 HOH HOH . K 4 HOH B 40 340 174 HOH HOH . K 4 HOH B 41 341 53 HOH HOH . K 4 HOH B 42 342 137 HOH HOH . K 4 HOH B 43 343 56 HOH HOH . K 4 HOH B 44 344 194 HOH HOH . K 4 HOH B 45 345 214 HOH HOH . K 4 HOH B 46 346 68 HOH HOH . K 4 HOH B 47 347 134 HOH HOH . K 4 HOH B 48 348 88 HOH HOH . K 4 HOH B 49 349 52 HOH HOH . K 4 HOH B 50 350 156 HOH HOH . K 4 HOH B 51 351 23 HOH HOH . K 4 HOH B 52 352 231 HOH HOH . K 4 HOH B 53 353 9 HOH HOH . K 4 HOH B 54 354 37 HOH HOH . K 4 HOH B 55 355 191 HOH HOH . K 4 HOH B 56 356 158 HOH HOH . K 4 HOH B 57 357 281 HOH HOH . K 4 HOH B 58 358 188 HOH HOH . K 4 HOH B 59 359 201 HOH HOH . K 4 HOH B 60 360 161 HOH HOH . K 4 HOH B 61 361 154 HOH HOH . K 4 HOH B 62 362 252 HOH HOH . K 4 HOH B 63 363 202 HOH HOH . K 4 HOH B 64 364 153 HOH HOH . K 4 HOH B 65 365 99 HOH HOH . K 4 HOH B 66 366 219 HOH HOH . K 4 HOH B 67 367 86 HOH HOH . K 4 HOH B 68 368 81 HOH HOH . K 4 HOH B 69 369 257 HOH HOH . K 4 HOH B 70 370 151 HOH HOH . K 4 HOH B 71 371 71 HOH HOH . K 4 HOH B 72 372 43 HOH HOH . K 4 HOH B 73 373 232 HOH HOH . K 4 HOH B 74 374 92 HOH HOH . K 4 HOH B 75 375 204 HOH HOH . K 4 HOH B 76 376 245 HOH HOH . K 4 HOH B 77 377 216 HOH HOH . K 4 HOH B 78 378 275 HOH HOH . K 4 HOH B 79 379 299 HOH HOH . K 4 HOH B 80 380 286 HOH HOH . K 4 HOH B 81 381 291 HOH HOH . K 4 HOH B 82 382 279 HOH HOH . K 4 HOH B 83 383 213 HOH HOH . K 4 HOH B 84 384 73 HOH HOH . K 4 HOH B 85 385 193 HOH HOH . K 4 HOH B 86 386 135 HOH HOH . K 4 HOH B 87 387 233 HOH HOH . K 4 HOH B 88 388 114 HOH HOH . K 4 HOH B 89 389 113 HOH HOH . K 4 HOH B 90 390 295 HOH HOH . K 4 HOH B 91 391 178 HOH HOH . K 4 HOH B 92 392 287 HOH HOH . K 4 HOH B 93 393 181 HOH HOH . K 4 HOH B 94 394 224 HOH HOH . K 4 HOH B 95 395 122 HOH HOH . K 4 HOH B 96 396 130 HOH HOH . K 4 HOH B 97 397 139 HOH HOH . K 4 HOH B 98 398 93 HOH HOH . K 4 HOH B 99 399 237 HOH HOH . K 4 HOH B 100 400 148 HOH HOH . K 4 HOH B 101 401 296 HOH HOH . K 4 HOH B 102 402 227 HOH HOH . K 4 HOH B 103 403 235 HOH HOH . K 4 HOH B 104 404 261 HOH HOH . L 4 HOH C 1 301 259 HOH HOH . L 4 HOH C 2 302 89 HOH HOH . L 4 HOH C 3 303 97 HOH HOH . L 4 HOH C 4 304 285 HOH HOH . L 4 HOH C 5 305 196 HOH HOH . L 4 HOH C 6 306 40 HOH HOH . L 4 HOH C 7 307 152 HOH HOH . L 4 HOH C 8 308 205 HOH HOH . L 4 HOH C 9 309 46 HOH HOH . L 4 HOH C 10 310 208 HOH HOH . L 4 HOH C 11 311 184 HOH HOH . L 4 HOH C 12 312 16 HOH HOH . L 4 HOH C 13 313 147 HOH HOH . L 4 HOH C 14 314 212 HOH HOH . L 4 HOH C 15 315 55 HOH HOH . L 4 HOH C 16 316 292 HOH HOH . L 4 HOH C 17 317 77 HOH HOH . L 4 HOH C 18 318 177 HOH HOH . L 4 HOH C 19 319 260 HOH HOH . L 4 HOH C 20 320 29 HOH HOH . L 4 HOH C 21 321 127 HOH HOH . L 4 HOH C 22 322 266 HOH HOH . L 4 HOH C 23 323 298 HOH HOH . L 4 HOH C 24 324 283 HOH HOH . L 4 HOH C 25 325 35 HOH HOH . L 4 HOH C 26 326 169 HOH HOH . L 4 HOH C 27 327 82 HOH HOH . L 4 HOH C 28 328 217 HOH HOH . L 4 HOH C 29 329 159 HOH HOH . L 4 HOH C 30 330 207 HOH HOH . L 4 HOH C 31 331 31 HOH HOH . L 4 HOH C 32 332 278 HOH HOH . L 4 HOH C 33 333 116 HOH HOH . L 4 HOH C 34 334 36 HOH HOH . L 4 HOH C 35 335 223 HOH HOH . L 4 HOH C 36 336 18 HOH HOH . L 4 HOH C 37 337 84 HOH HOH . L 4 HOH C 38 338 144 HOH HOH . L 4 HOH C 39 339 47 HOH HOH . L 4 HOH C 40 340 203 HOH HOH . L 4 HOH C 41 341 126 HOH HOH . L 4 HOH C 42 342 187 HOH HOH . L 4 HOH C 43 343 293 HOH HOH . L 4 HOH C 44 344 94 HOH HOH . L 4 HOH C 45 345 110 HOH HOH . L 4 HOH C 46 346 76 HOH HOH . L 4 HOH C 47 347 108 HOH HOH . L 4 HOH C 48 348 112 HOH HOH . L 4 HOH C 49 349 170 HOH HOH . L 4 HOH C 50 350 215 HOH HOH . L 4 HOH C 51 351 106 HOH HOH . L 4 HOH C 52 352 262 HOH HOH . L 4 HOH C 53 353 54 HOH HOH . L 4 HOH C 54 354 301 HOH HOH . L 4 HOH C 55 355 3 HOH HOH . L 4 HOH C 56 356 57 HOH HOH . L 4 HOH C 57 357 206 HOH HOH . L 4 HOH C 58 358 211 HOH HOH . L 4 HOH C 59 359 17 HOH HOH . L 4 HOH C 60 360 121 HOH HOH . L 4 HOH C 61 361 69 HOH HOH . L 4 HOH C 62 362 103 HOH HOH . L 4 HOH C 63 363 138 HOH HOH . L 4 HOH C 64 364 6 HOH HOH . L 4 HOH C 65 365 140 HOH HOH . L 4 HOH C 66 366 98 HOH HOH . L 4 HOH C 67 367 276 HOH HOH . L 4 HOH C 68 368 166 HOH HOH . L 4 HOH C 69 369 34 HOH HOH . L 4 HOH C 70 370 27 HOH HOH . L 4 HOH C 71 371 145 HOH HOH . L 4 HOH C 72 372 195 HOH HOH . L 4 HOH C 73 373 179 HOH HOH . L 4 HOH C 74 374 118 HOH HOH . L 4 HOH C 75 375 124 HOH HOH . L 4 HOH C 76 376 243 HOH HOH . L 4 HOH C 77 377 209 HOH HOH . L 4 HOH C 78 378 229 HOH HOH . L 4 HOH C 79 379 167 HOH HOH . L 4 HOH C 80 380 157 HOH HOH . L 4 HOH C 81 381 274 HOH HOH . L 4 HOH C 82 382 236 HOH HOH . L 4 HOH C 83 383 234 HOH HOH . L 4 HOH C 84 384 59 HOH HOH . L 4 HOH C 85 385 290 HOH HOH . L 4 HOH C 86 386 267 HOH HOH . L 4 HOH C 87 387 33 HOH HOH . L 4 HOH C 88 388 280 HOH HOH . L 4 HOH C 89 389 255 HOH HOH . L 4 HOH C 90 390 142 HOH HOH . L 4 HOH C 91 391 263 HOH HOH . L 4 HOH C 92 392 117 HOH HOH . L 4 HOH C 93 393 268 HOH HOH . L 4 HOH C 94 394 249 HOH HOH . L 4 HOH C 95 395 228 HOH HOH . L 4 HOH C 96 396 239 HOH HOH . L 4 HOH C 97 397 225 HOH HOH . L 4 HOH C 98 398 39 HOH HOH . L 4 HOH C 99 399 251 HOH HOH . L 4 HOH C 100 400 200 HOH HOH . L 4 HOH C 101 401 70 HOH HOH . L 4 HOH C 102 402 238 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 3 14.97 -1.19 14.896 1 28.83 ? C1 EDO 202 A 1 HETATM 2 O O1 EDO . . . E 3 14.189 -0.946 16.065 1 27.56 ? O1 EDO 202 A 1 HETATM 3 C C2 EDO . . . E 3 14.245 -1.766 13.768 1 29.19 ? C2 EDO 202 A 1 HETATM 4 O O2 EDO . . . E 3 12.924 -2.181 14.018 1 31.76 ? O2 EDO 202 A 1 HETATM 5 H H11 EDO . . . E 3 15.706 -1.793 15.131 1 28.68 ? H11 EDO 202 A 1 HETATM 6 H H12 EDO . . . E 3 15.365 -0.341 14.605 1 28.79 ? H12 EDO 202 A 1 HETATM 7 H HO1 EDO . . . E 3 14.717 -0.655 16.638 0 26.3 ? HO1 EDO 202 A 1 HETATM 8 H H21 EDO . . . E 3 14.753 -2.537 13.44 1 29.74 ? H21 EDO 202 A 1 HETATM 9 H H22 EDO . . . E 3 14.225 -1.101 13.048 1 29.36 ? H22 EDO 202 A 1 HETATM 10 H HO2 EDO . . . E 3 12.582 -2.437 13.291 0 28.92 ? HO2 EDO 202 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 41 _model_server_stats.create_model_time_ms 48 _model_server_stats.query_time_ms 355 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #