data_9GRN
#
_model_server_result.job_id            hVlq9grcpLz9da266_EDaA 
_model_server_result.datetime_utc      '2025-07-26 06:55:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9grn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":2010}' 
#
_entry.id    9GRN 
#
_exptl.entry_id    9GRN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    22 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          126.91 
_cell.angle_gamma         90 
_cell.entry_id            9GRN 
_cell.length_a            249.475 
_cell.length_b            90.516 
_cell.length_c            200.898 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9GRN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G,H,I,J,K,L,M,N,O,P,QA 1 1 
B,Q,R,S,T,U,V,W,X,RA 2 1 
C,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,SA 3 1 
D,KA,LA,MA,NA,OA,PA,TA 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 Q N N 
? 2 R N N 
? 2 S N N 
? 2 U N N 
? 2 V N N 
? 2 Y N N 
? 2 AA N N 
? 2 EA N N 
? 2 FA N N 
? 2 GA N N 
? 2 KA N N 
? 2 LA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A ND1 HIS 40 A HIS 573 1_555 P ZN ZN . A ZN 2012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc2 A OE2 GLU 42 A GLU 575 1_555 P ZN ZN . A ZN 2012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? 
metalc ? metalc3 A NE2 HIS 118 A HIS 651 1_555 O ZN ZN . A ZN 2011 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? 
metalc ? metalc4 A SG CYS 260 A CYS 793 1_555 O ZN ZN . A ZN 2011 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? 
metalc ? metalc5 A ND1 HIS 303 A HIS 836 1_555 O ZN ZN . A ZN 2011 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? 
metalc ? metalc6 A ND1 HIS 464 A HIS 997 1_555 O ZN ZN . A ZN 2011 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? 
metalc ? metalc7 P ZN ZN . A ZN 2012 1_555 D ND1 HIS 40 D HIS 573 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
metalc ? metalc8 P ZN ZN . A ZN 2012 1_555 D OE2 GLU 42 D GLU 575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.919 ? 
metalc ? metalc9 B ND1 HIS 40 B HIS 573 1_555 X ZN ZN . B ZN 2008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
metalc ? metalc10 B OE1 GLU 42 B GLU 575 1_555 X ZN ZN . B ZN 2008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? 
metalc ? metalc11 B OE2 GLU 42 B GLU 575 1_555 X ZN ZN . B ZN 2008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
metalc ? metalc12 B NE2 HIS 118 B HIS 651 1_555 W ZN ZN . B ZN 2007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? 
metalc ? metalc13 B SG CYS 260 B CYS 793 1_555 W ZN ZN . B ZN 2007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc14 B ND1 HIS 303 B HIS 836 1_555 W ZN ZN . B ZN 2007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? 
metalc ? metalc15 B ND1 HIS 464 B HIS 997 1_555 W ZN ZN . B ZN 2007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
metalc ? metalc16 X ZN ZN . B ZN 2008 1_555 C ND1 HIS 40 C HIS 573 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc17 X ZN ZN . B ZN 2008 1_555 C OE1 GLU 42 C GLU 575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? 
metalc ? metalc18 X ZN ZN . B ZN 2008 1_555 C OE2 GLU 42 C GLU 575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? 
metalc ? metalc19 C NE2 HIS 118 C HIS 651 1_555 JA ZN ZN . C ZN 1112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? 
metalc ? metalc20 C SG CYS 260 C CYS 793 1_555 JA ZN ZN . C ZN 1112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc21 C ND1 HIS 303 C HIS 836 1_555 JA ZN ZN . C ZN 1112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? 
metalc ? metalc22 C ND1 HIS 464 C HIS 997 1_555 JA ZN ZN . C ZN 1112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? 
metalc ? metalc23 D NE2 HIS 118 D HIS 651 1_555 PA ZN ZN . D ZN 1206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? 
metalc ? metalc24 D SG CYS 260 D CYS 793 1_555 PA ZN ZN . D ZN 1206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? 
metalc ? metalc25 D ND1 HIS 303 D HIS 836 1_555 PA ZN ZN . D ZN 1206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
metalc ? metalc26 D ND1 HIS 464 D HIS 1064 1_555 PA ZN ZN . D ZN 1206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 135 n n 
C1 C2 GOL sing 136 n n 
C1 H11 GOL sing 137 n n 
C1 H12 GOL sing 138 n n 
O1 HO1 GOL sing 139 n n 
C2 O2 GOL sing 140 n n 
C2 C3 GOL sing 141 n n 
C2 H2 GOL sing 142 n n 
O2 HO2 GOL sing 143 n n 
C3 O3 GOL sing 144 n n 
C3 H31 GOL sing 145 n n 
C3 H32 GOL sing 146 n n 
O3 HO3 GOL sing 147 n n 
#
_atom_sites.entry_id                     9GRN 
_atom_sites.fract_transf_matrix[1][1]    0.004008 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003011 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011048 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006226 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 GOL A 1 2001 2001 GOL GOL . 
F 2 GOL A 1 2002 2002 GOL GOL . 
G 2 GOL A 1 2003 2003 GOL GOL . 
H 2 GOL A 1 2004 2004 GOL GOL . 
I 2 GOL A 1 2005 2005 GOL GOL . 
J 2 GOL A 1 2006 2006 GOL GOL . 
K 2 GOL A 1 2007 2007 GOL GOL . 
L 2 GOL A 1 2008 2008 GOL GOL . 
M 2 GOL A 1 2009 2009 GOL GOL . 
N 2 GOL A 1 2010 2010 GOL GOL . 
O 3 ZN A 1 2011 2000 ZN ZN . 
P 3 ZN A 1 2012 2001 ZN ZN . 
Q 2 GOL B 1 2001 2001 GOL GOL . 
R 2 GOL B 1 2002 2002 GOL GOL . 
S 2 GOL B 1 2003 2003 GOL GOL . 
T 4 LPC B 1 2004 2004 LPC LPC . 
U 2 GOL B 1 2005 2005 GOL GOL . 
V 2 GOL B 1 2006 2006 GOL GOL . 
W 3 ZN B 1 2007 2000 ZN ZN . 
X 3 ZN B 1 2008 2001 ZN ZN . 
Y 2 GOL C 1 1101 2002 GOL GOL . 
Z 5 ACT C 1 1102 2003 ACT ACT . 
AA 2 GOL C 1 1103 2004 GOL GOL . 
BA 5 ACT C 1 1104 2005 ACT ACT . 
CA 5 ACT C 1 1105 2006 ACT ACT . 
DA 5 ACT C 1 1106 2007 ACT ACT . 
EA 2 GOL C 1 1107 2008 GOL GOL . 
FA 2 GOL C 1 1108 2009 GOL GOL . 
GA 2 GOL C 1 1109 2010 GOL GOL . 
HA 5 ACT C 1 1110 2011 ACT ACT . 
IA 5 ACT C 1 1111 2012 ACT ACT . 
JA 3 ZN C 1 1112 2000 ZN ZN . 
KA 2 GOL D 1 1201 2002 GOL GOL . 
LA 2 GOL D 1 1202 2003 GOL GOL . 
MA 5 ACT D 1 1203 2004 ACT ACT . 
NA 5 ACT D 1 1204 2006 ACT ACT . 
OA 5 ACT D 1 1205 2007 ACT ACT . 
PA 3 ZN D 1 1206 2000 ZN ZN . 
QA 6 HOH A 1 2101 33 HOH HOH . 
QA 6 HOH A 2 2102 4 HOH HOH . 
QA 6 HOH A 3 2103 6 HOH HOH . 
QA 6 HOH A 4 2104 45 HOH HOH . 
QA 6 HOH A 5 2105 5 HOH HOH . 
QA 6 HOH A 6 2106 32 HOH HOH . 
QA 6 HOH A 7 2107 3 HOH HOH . 
QA 6 HOH A 8 2108 34 HOH HOH . 
QA 6 HOH A 9 2109 1 HOH HOH . 
QA 6 HOH A 10 2110 2 HOH HOH . 
QA 6 HOH A 11 2111 29 HOH HOH . 
RA 6 HOH B 1 2101 7 HOH HOH . 
RA 6 HOH B 2 2102 36 HOH HOH . 
RA 6 HOH B 3 2103 37 HOH HOH . 
RA 6 HOH B 4 2104 8 HOH HOH . 
RA 6 HOH B 5 2105 38 HOH HOH . 
RA 6 HOH B 6 2106 35 HOH HOH . 
RA 6 HOH B 7 2107 9 HOH HOH . 
RA 6 HOH B 8 2108 10 HOH HOH . 
RA 6 HOH B 9 2109 21 HOH HOH . 
RA 6 HOH B 10 2110 46 HOH HOH . 
RA 6 HOH B 11 2111 30 HOH HOH . 
SA 6 HOH C 1 1201 12 HOH HOH . 
SA 6 HOH C 2 1202 40 HOH HOH . 
SA 6 HOH C 3 1203 28 HOH HOH . 
SA 6 HOH C 4 1204 13 HOH HOH . 
SA 6 HOH C 5 1205 14 HOH HOH . 
SA 6 HOH C 6 1206 16 HOH HOH . 
SA 6 HOH C 7 1207 17 HOH HOH . 
SA 6 HOH C 8 1208 41 HOH HOH . 
SA 6 HOH C 9 1209 15 HOH HOH . 
SA 6 HOH C 10 1210 11 HOH HOH . 
TA 6 HOH D 1 1301 47 HOH HOH . 
TA 6 HOH D 2 1302 31 HOH HOH . 
TA 6 HOH D 3 1303 19 HOH HOH . 
TA 6 HOH D 4 1304 22 HOH HOH . 
TA 6 HOH D 5 1305 18 HOH HOH . 
TA 6 HOH D 6 1306 39 HOH HOH . 
TA 6 HOH D 7 1307 44 HOH HOH . 
TA 6 HOH D 8 1308 25 HOH HOH . 
TA 6 HOH D 9 1309 27 HOH HOH . 
TA 6 HOH D 10 1310 42 HOH HOH . 
TA 6 HOH D 11 1311 24 HOH HOH . 
TA 6 HOH D 12 1312 20 HOH HOH . 
TA 6 HOH D 13 1313 23 HOH HOH . 
TA 6 HOH D 14 1314 26 HOH HOH . 
TA 6 HOH D 15 1315 43 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . N 2 -68.078 -58.329 53.723 1 127.27 ? C1 GOL 2010 A 1 
HETATM 2 O O1 GOL . . . N 2 -69.209 -59.143 53.922 1 138.38 ? O1 GOL 2010 A 1 
HETATM 3 C C2 GOL . . . N 2 -67.954 -57.985 52.254 1 105.79 ? C2 GOL 2010 A 1 
HETATM 4 O O2 GOL . . . N 2 -66.665 -57.464 52.022 1 96.5 ? O2 GOL 2010 A 1 
HETATM 5 C C3 GOL . . . N 2 -68.205 -59.215 51.397 1 104.38 ? C3 GOL 2010 A 1 
HETATM 6 O O3 GOL . . . N 2 -67.969 -58.854 50.055 1 87.91 ? O3 GOL 2010 A 1 
HETATM 7 H H11 GOL . . . N 2 -67.265 -58.776 54.008 1 152.81 ? H11 GOL 2010 A 1 
HETATM 8 H H12 GOL . . . N 2 -68.141 -57.505 54.231 1 152.81 ? H12 GOL 2010 A 1 
HETATM 9 H HO1 GOL . . . N 2 -69.243 -59.35 54.745 1 166.14 ? HO1 GOL 2010 A 1 
HETATM 10 H H2 GOL . . . N 2 -68.637 -57.33 52.042 1 127.03 ? H2 GOL 2010 A 1 
HETATM 11 H HO2 GOL . . . N 2 -66.566 -57.389 51.181 1 115.89 ? HO2 GOL 2010 A 1 
HETATM 12 H H31 GOL . . . N 2 -69.117 -59.519 51.53 1 125.34 ? H31 GOL 2010 A 1 
HETATM 13 H H32 GOL . . . N 2 -67.618 -59.933 51.683 1 125.34 ? H32 GOL 2010 A 1 
HETATM 14 H HO3 GOL . . . N 2 -67.896 -59.563 49.592 1 105.58 ? HO3 GOL 2010 A 1 
#
_model_server_stats.io_time_ms              51 
_model_server_stats.parse_time_ms           38 
_model_server_stats.create_model_time_ms    41 
_model_server_stats.query_time_ms           417 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           14 
#