data_9GTE # _model_server_result.job_id QKFUCeN252uJGYAGMRrtpQ _model_server_result.datetime_utc '2024-11-06 00:06:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9gte # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":506}' # _entry.id 9GTE # _exptl.entry_id 9GTE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9GTE _cell.length_a 42.591 _cell.length_b 56.014 _cell.length_c 69.008 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9GTE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 9GTE _atom_sites.fract_transf_matrix[1][1] 0.023479 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017853 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014491 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO B 1 501 478 EDO EDO . C 2 EDO B 1 502 479 EDO EDO . D 2 EDO B 1 503 480 EDO EDO . E 2 EDO B 1 504 481 EDO EDO . F 2 EDO B 1 505 483 EDO EDO . G 2 EDO B 1 506 484 EDO EDO . H 3 SVR B 1 507 485 SVR Sur . I 4 HOH B 1 601 115 HOH HOH . I 4 HOH B 2 602 133 HOH HOH . I 4 HOH B 3 603 158 HOH HOH . I 4 HOH B 4 604 170 HOH HOH . I 4 HOH B 5 605 151 HOH HOH . I 4 HOH B 6 606 71 HOH HOH . I 4 HOH B 7 607 79 HOH HOH . I 4 HOH B 8 608 64 HOH HOH . I 4 HOH B 9 609 19 HOH HOH . I 4 HOH B 10 610 85 HOH HOH . I 4 HOH B 11 611 173 HOH HOH . I 4 HOH B 12 612 52 HOH HOH . I 4 HOH B 13 613 30 HOH HOH . I 4 HOH B 14 614 6 HOH HOH . I 4 HOH B 15 615 33 HOH HOH . I 4 HOH B 16 616 21 HOH HOH . I 4 HOH B 17 617 8 HOH HOH . I 4 HOH B 18 618 87 HOH HOH . I 4 HOH B 19 619 50 HOH HOH . I 4 HOH B 20 620 59 HOH HOH . I 4 HOH B 21 621 38 HOH HOH . I 4 HOH B 22 622 117 HOH HOH . I 4 HOH B 23 623 96 HOH HOH . I 4 HOH B 24 624 101 HOH HOH . I 4 HOH B 25 625 149 HOH HOH . I 4 HOH B 26 626 150 HOH HOH . I 4 HOH B 27 627 99 HOH HOH . I 4 HOH B 28 628 27 HOH HOH . I 4 HOH B 29 629 42 HOH HOH . I 4 HOH B 30 630 137 HOH HOH . I 4 HOH B 31 631 66 HOH HOH . I 4 HOH B 32 632 165 HOH HOH . I 4 HOH B 33 633 88 HOH HOH . I 4 HOH B 34 634 15 HOH HOH . I 4 HOH B 35 635 157 HOH HOH . I 4 HOH B 36 636 26 HOH HOH . I 4 HOH B 37 637 39 HOH HOH . I 4 HOH B 38 638 36 HOH HOH . I 4 HOH B 39 639 86 HOH HOH . I 4 HOH B 40 640 22 HOH HOH . I 4 HOH B 41 641 24 HOH HOH . I 4 HOH B 42 642 46 HOH HOH . I 4 HOH B 43 643 104 HOH HOH . I 4 HOH B 44 644 75 HOH HOH . I 4 HOH B 45 645 100 HOH HOH . I 4 HOH B 46 646 140 HOH HOH . I 4 HOH B 47 647 136 HOH HOH . I 4 HOH B 48 648 4 HOH HOH . I 4 HOH B 49 649 44 HOH HOH . I 4 HOH B 50 650 10 HOH HOH . I 4 HOH B 51 651 126 HOH HOH . I 4 HOH B 52 652 68 HOH HOH . I 4 HOH B 53 653 105 HOH HOH . I 4 HOH B 54 654 2 HOH HOH . I 4 HOH B 55 655 56 HOH HOH . I 4 HOH B 56 656 1 HOH HOH . I 4 HOH B 57 657 61 HOH HOH . I 4 HOH B 58 658 93 HOH HOH . I 4 HOH B 59 659 155 HOH HOH . I 4 HOH B 60 660 78 HOH HOH . I 4 HOH B 61 661 135 HOH HOH . I 4 HOH B 62 662 43 HOH HOH . I 4 HOH B 63 663 83 HOH HOH . I 4 HOH B 64 664 37 HOH HOH . I 4 HOH B 65 665 14 HOH HOH . I 4 HOH B 66 666 138 HOH HOH . I 4 HOH B 67 667 108 HOH HOH . I 4 HOH B 68 668 11 HOH HOH . I 4 HOH B 69 669 25 HOH HOH . I 4 HOH B 70 670 58 HOH HOH . I 4 HOH B 71 671 162 HOH HOH . I 4 HOH B 72 672 55 HOH HOH . I 4 HOH B 73 673 20 HOH HOH . I 4 HOH B 74 674 81 HOH HOH . I 4 HOH B 75 675 40 HOH HOH . I 4 HOH B 76 676 76 HOH HOH . I 4 HOH B 77 677 17 HOH HOH . I 4 HOH B 78 678 67 HOH HOH . I 4 HOH B 79 679 107 HOH HOH . I 4 HOH B 80 680 60 HOH HOH . I 4 HOH B 81 681 51 HOH HOH . I 4 HOH B 82 682 130 HOH HOH . I 4 HOH B 83 683 5 HOH HOH . I 4 HOH B 84 684 3 HOH HOH . I 4 HOH B 85 685 45 HOH HOH . I 4 HOH B 86 686 73 HOH HOH . I 4 HOH B 87 687 57 HOH HOH . I 4 HOH B 88 688 34 HOH HOH . I 4 HOH B 89 689 49 HOH HOH . I 4 HOH B 90 690 47 HOH HOH . I 4 HOH B 91 691 94 HOH HOH . I 4 HOH B 92 692 48 HOH HOH . I 4 HOH B 93 693 54 HOH HOH . I 4 HOH B 94 694 23 HOH HOH . I 4 HOH B 95 695 62 HOH HOH . I 4 HOH B 96 696 161 HOH HOH . I 4 HOH B 97 697 119 HOH HOH . I 4 HOH B 98 698 69 HOH HOH . I 4 HOH B 99 699 123 HOH HOH . I 4 HOH B 100 700 82 HOH HOH . I 4 HOH B 101 701 31 HOH HOH . I 4 HOH B 102 702 72 HOH HOH . I 4 HOH B 103 703 41 HOH HOH . I 4 HOH B 104 704 132 HOH HOH . I 4 HOH B 105 705 12 HOH HOH . I 4 HOH B 106 706 35 HOH HOH . I 4 HOH B 107 707 29 HOH HOH . I 4 HOH B 108 708 53 HOH HOH . I 4 HOH B 109 709 109 HOH HOH . I 4 HOH B 110 710 174 HOH HOH . I 4 HOH B 111 711 74 HOH HOH . I 4 HOH B 112 712 154 HOH HOH . I 4 HOH B 113 713 89 HOH HOH . I 4 HOH B 114 714 103 HOH HOH . I 4 HOH B 115 715 153 HOH HOH . I 4 HOH B 116 716 80 HOH HOH . I 4 HOH B 117 717 111 HOH HOH . I 4 HOH B 118 718 120 HOH HOH . I 4 HOH B 119 719 13 HOH HOH . I 4 HOH B 120 720 32 HOH HOH . I 4 HOH B 121 721 7 HOH HOH . I 4 HOH B 122 722 95 HOH HOH . I 4 HOH B 123 723 147 HOH HOH . I 4 HOH B 124 724 90 HOH HOH . I 4 HOH B 125 725 175 HOH HOH . I 4 HOH B 126 726 106 HOH HOH . I 4 HOH B 127 727 84 HOH HOH . I 4 HOH B 128 728 159 HOH HOH . I 4 HOH B 129 729 144 HOH HOH . I 4 HOH B 130 730 156 HOH HOH . I 4 HOH B 131 731 167 HOH HOH . I 4 HOH B 132 732 142 HOH HOH . I 4 HOH B 133 733 143 HOH HOH . I 4 HOH B 134 734 141 HOH HOH . I 4 HOH B 135 735 166 HOH HOH . I 4 HOH B 136 736 139 HOH HOH . I 4 HOH B 137 737 145 HOH HOH . I 4 HOH B 138 738 164 HOH HOH . I 4 HOH B 139 739 63 HOH HOH . I 4 HOH B 140 740 128 HOH HOH . I 4 HOH B 141 741 102 HOH HOH . I 4 HOH B 142 742 146 HOH HOH . I 4 HOH B 143 743 65 HOH HOH . I 4 HOH B 144 744 121 HOH HOH . I 4 HOH B 145 745 28 HOH HOH . I 4 HOH B 146 746 148 HOH HOH . I 4 HOH B 147 747 97 HOH HOH . I 4 HOH B 148 748 127 HOH HOH . I 4 HOH B 149 749 152 HOH HOH . I 4 HOH B 150 750 134 HOH HOH . I 4 HOH B 151 751 160 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 2 8.736 -2.292 -29.504 1 26.13 ? C1 EDO 506 B 1 HETATM 2 O O1 EDO . . . G 2 9.132 -1.209 -30.312 1 25.16 ? O1 EDO 506 B 1 HETATM 3 C C2 EDO . . . G 2 9.853 -2.957 -28.799 1 26.79 ? C2 EDO 506 B 1 HETATM 4 O O2 EDO . . . G 2 11.086 -2.912 -29.493 1 28.45 ? O2 EDO 506 B 1 # _model_server_stats.io_time_ms 117 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 4 #