data_9GTY # _model_server_result.job_id 95-5WbFoF8Ocf7k5xFLhVg _model_server_result.datetime_utc '2025-07-21 02:13:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9gty # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 9GTY # _exptl.entry_id 9GTY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 277.706 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5R)-5-[(7-chloro-1H-indol-3-yl)methyl]-3-methylimidazolidine-2,4-dione _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9GTY _cell.length_a 47.698 _cell.length_b 93.482 _cell.length_c 125.533 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9GTY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,H 1 1 B,E,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C13 H12 Cl N3 O2' _chem_comp.formula_weight 277.706 _chem_comp.id RCM _chem_comp.mon_nstd_flag . _chem_comp.name (5R)-5-[(7-chloro-1H-indol-3-yl)methyl]-3-methylimidazolidine-2,4-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C17 N3 RCM sing 337 n n CL1 C4 RCM sing 338 n n N3 C12 RCM sing 339 n n N3 C14 RCM sing 340 n n N1 C8 RCM sing 341 n y N1 C3 RCM sing 342 n y O1 C12 RCM doub 343 n n C8 C7 RCM doub 344 n y O2 C14 RCM doub 345 n n C12 C11 RCM sing 346 n n C4 C3 RCM doub 347 n y C4 C5 RCM sing 348 n y C3 C2 RCM sing 349 n y C14 N2 RCM sing 350 n n C7 C2 RCM sing 351 n y C7 C10 RCM sing 352 n n C5 C6 RCM doub 353 n y C2 C1 RCM doub 354 n y C11 N2 RCM sing 355 n n C11 C10 RCM sing 356 n n C6 C1 RCM sing 357 n y C17 H1 RCM sing 358 n n C17 H2 RCM sing 359 n n C17 H3 RCM sing 360 n n N2 H4 RCM sing 361 n n C11 H5 RCM sing 362 n n C10 H6 RCM sing 363 n n C10 H7 RCM sing 364 n n C8 H8 RCM sing 365 n n N1 H9 RCM sing 366 n n C5 H10 RCM sing 367 n n C6 H11 RCM sing 368 n n C1 H12 RCM sing 369 n n # _atom_sites.entry_id 9GTY _atom_sites.fract_transf_matrix[1][1] 0.020965 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010697 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007966 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 RCM A 1 301 301 RCM NEC . D 3 DMS A 1 302 302 DMS DMS . E 2 RCM B 1 301 301 RCM NEC . F 4 A1IKX B 1 302 302 A1IKX INH . G 3 DMS B 1 303 303 DMS DMS . H 5 HOH A 1 401 42 HOH HOH . H 5 HOH A 2 402 67 HOH HOH . H 5 HOH A 3 403 30 HOH HOH . H 5 HOH A 4 404 1 HOH HOH . H 5 HOH A 5 405 50 HOH HOH . H 5 HOH A 6 406 14 HOH HOH . H 5 HOH A 7 407 43 HOH HOH . H 5 HOH A 8 408 17 HOH HOH . H 5 HOH A 9 409 108 HOH HOH . H 5 HOH A 10 410 55 HOH HOH . H 5 HOH A 11 411 81 HOH HOH . H 5 HOH A 12 412 86 HOH HOH . H 5 HOH A 13 413 46 HOH HOH . H 5 HOH A 14 414 74 HOH HOH . H 5 HOH A 15 415 34 HOH HOH . H 5 HOH A 16 416 87 HOH HOH . H 5 HOH A 17 417 56 HOH HOH . H 5 HOH A 18 418 71 HOH HOH . H 5 HOH A 19 419 4 HOH HOH . H 5 HOH A 20 420 18 HOH HOH . H 5 HOH A 21 421 11 HOH HOH . H 5 HOH A 22 422 59 HOH HOH . H 5 HOH A 23 423 5 HOH HOH . H 5 HOH A 24 424 39 HOH HOH . H 5 HOH A 25 425 58 HOH HOH . H 5 HOH A 26 426 107 HOH HOH . H 5 HOH A 27 427 85 HOH HOH . H 5 HOH A 28 428 70 HOH HOH . H 5 HOH A 29 429 26 HOH HOH . H 5 HOH A 30 430 84 HOH HOH . H 5 HOH A 31 431 53 HOH HOH . H 5 HOH A 32 432 7 HOH HOH . H 5 HOH A 33 433 40 HOH HOH . H 5 HOH A 34 434 75 HOH HOH . H 5 HOH A 35 435 77 HOH HOH . H 5 HOH A 36 436 83 HOH HOH . H 5 HOH A 37 437 80 HOH HOH . H 5 HOH A 38 438 54 HOH HOH . H 5 HOH A 39 439 35 HOH HOH . H 5 HOH A 40 440 33 HOH HOH . H 5 HOH A 41 441 65 HOH HOH . H 5 HOH A 42 442 68 HOH HOH . H 5 HOH A 43 443 12 HOH HOH . H 5 HOH A 44 444 64 HOH HOH . H 5 HOH A 45 445 69 HOH HOH . I 5 HOH B 1 401 13 HOH HOH . I 5 HOH B 2 402 92 HOH HOH . I 5 HOH B 3 403 91 HOH HOH . I 5 HOH B 4 404 47 HOH HOH . I 5 HOH B 5 405 90 HOH HOH . I 5 HOH B 6 406 63 HOH HOH . I 5 HOH B 7 407 9 HOH HOH . I 5 HOH B 8 408 3 HOH HOH . I 5 HOH B 9 409 88 HOH HOH . I 5 HOH B 10 410 60 HOH HOH . I 5 HOH B 11 411 101 HOH HOH . I 5 HOH B 12 412 66 HOH HOH . I 5 HOH B 13 413 28 HOH HOH . I 5 HOH B 14 414 44 HOH HOH . I 5 HOH B 15 415 23 HOH HOH . I 5 HOH B 16 416 94 HOH HOH . I 5 HOH B 17 417 52 HOH HOH . I 5 HOH B 18 418 41 HOH HOH . I 5 HOH B 19 419 36 HOH HOH . I 5 HOH B 20 420 48 HOH HOH . I 5 HOH B 21 421 51 HOH HOH . I 5 HOH B 22 422 2 HOH HOH . I 5 HOH B 23 423 20 HOH HOH . I 5 HOH B 24 424 89 HOH HOH . I 5 HOH B 25 425 10 HOH HOH . I 5 HOH B 26 426 99 HOH HOH . I 5 HOH B 27 427 45 HOH HOH . I 5 HOH B 28 428 93 HOH HOH . I 5 HOH B 29 429 82 HOH HOH . I 5 HOH B 30 430 76 HOH HOH . I 5 HOH B 31 431 24 HOH HOH . I 5 HOH B 32 432 27 HOH HOH . I 5 HOH B 33 433 73 HOH HOH . I 5 HOH B 34 434 19 HOH HOH . I 5 HOH B 35 435 79 HOH HOH . I 5 HOH B 36 436 29 HOH HOH . I 5 HOH B 37 437 32 HOH HOH . I 5 HOH B 38 438 57 HOH HOH . I 5 HOH B 39 439 96 HOH HOH . I 5 HOH B 40 440 61 HOH HOH . I 5 HOH B 41 441 31 HOH HOH . I 5 HOH B 42 442 95 HOH HOH . I 5 HOH B 43 443 25 HOH HOH . I 5 HOH B 44 444 49 HOH HOH . I 5 HOH B 45 445 62 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 RCM . . . E 2 23.107 -2.927 52.721 1 54.48 ? O2 RCM 301 B 1 HETATM 2 C C14 RCM . . . E 2 22.113 -3.597 52.474 1 54.62 ? C14 RCM 301 B 1 HETATM 3 N N3 RCM . . . E 2 21.405 -4.286 53.385 1 54.98 ? N3 RCM 301 B 1 HETATM 4 C C17 RCM . . . E 2 21.715 -4.339 54.815 1 55.13 ? C17 RCM 301 B 1 HETATM 5 C C12 RCM . . . E 2 20.355 -4.928 52.837 1 54.72 ? C12 RCM 301 B 1 HETATM 6 O O1 RCM . . . E 2 19.541 -5.639 53.39 1 55.06 ? O1 RCM 301 B 1 HETATM 7 N N2 RCM . . . E 2 21.596 -3.731 51.235 1 54.2 ? N2 RCM 301 B 1 HETATM 8 C C11 RCM . . . E 2 20.407 -4.592 51.372 1 53.79 ? C11 RCM 301 B 1 HETATM 9 C C10 RCM . . . E 2 19.13 -3.872 50.943 1 53.06 ? C10 RCM 301 B 1 HETATM 10 C C7 RCM . . . E 2 18.918 -2.584 51.673 1 53.16 ? C7 RCM 301 B 1 HETATM 11 C C2 RCM . . . E 2 19.534 -1.304 51.337 1 53.3 ? C2 RCM 301 B 1 HETATM 12 C C8 RCM . . . E 2 18.072 -2.364 52.69 1 53.12 ? C8 RCM 301 B 1 HETATM 13 N N1 RCM . . . E 2 18.108 -1.047 53.051 1 53.06 ? N1 RCM 301 B 1 HETATM 14 C C3 RCM . . . E 2 19.001 -0.377 52.239 1 53.74 ? C3 RCM 301 B 1 HETATM 15 C C4 RCM . . . E 2 19.425 0.942 52.16 1 54.93 ? C4 RCM 301 B 1 HETATM 16 CL CL1 RCM . . . E 2 18.774 2.098 53.255 1 57.49 ? CL1 RCM 301 B 1 HETATM 17 C C5 RCM . . . E 2 20.364 1.336 51.249 1 54.1 ? C5 RCM 301 B 1 HETATM 18 C C6 RCM . . . E 2 20.888 0.399 50.379 1 53.61 ? C6 RCM 301 B 1 HETATM 19 C C1 RCM . . . E 2 20.48 -0.901 50.408 1 53.05 ? C1 RCM 301 B 1 # _model_server_stats.io_time_ms 89 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 471 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 19 #