data_9GTY # _model_server_result.job_id SmhzbTd5JAEOb-BbgXyKtw _model_server_result.datetime_utc '2025-07-21 07:18:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9gty # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":303}' # _entry.id 9GTY # _exptl.entry_id 9GTY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9GTY _cell.length_a 47.698 _cell.length_b 93.482 _cell.length_c 125.533 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9GTY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,H 1 1 B,E,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 134 n n S C1 DMS sing 135 n n S C2 DMS sing 136 n n C1 H11 DMS sing 137 n n C1 H12 DMS sing 138 n n C1 H13 DMS sing 139 n n C2 H21 DMS sing 140 n n C2 H22 DMS sing 141 n n C2 H23 DMS sing 142 n n # _atom_sites.entry_id 9GTY _atom_sites.fract_transf_matrix[1][1] 0.020965 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010697 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007966 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 RCM A 1 301 301 RCM NEC . D 3 DMS A 1 302 302 DMS DMS . E 2 RCM B 1 301 301 RCM NEC . F 4 A1IKX B 1 302 302 A1IKX INH . G 3 DMS B 1 303 303 DMS DMS . H 5 HOH A 1 401 42 HOH HOH . H 5 HOH A 2 402 67 HOH HOH . H 5 HOH A 3 403 30 HOH HOH . H 5 HOH A 4 404 1 HOH HOH . H 5 HOH A 5 405 50 HOH HOH . H 5 HOH A 6 406 14 HOH HOH . H 5 HOH A 7 407 43 HOH HOH . H 5 HOH A 8 408 17 HOH HOH . H 5 HOH A 9 409 108 HOH HOH . H 5 HOH A 10 410 55 HOH HOH . H 5 HOH A 11 411 81 HOH HOH . H 5 HOH A 12 412 86 HOH HOH . H 5 HOH A 13 413 46 HOH HOH . H 5 HOH A 14 414 74 HOH HOH . H 5 HOH A 15 415 34 HOH HOH . H 5 HOH A 16 416 87 HOH HOH . H 5 HOH A 17 417 56 HOH HOH . H 5 HOH A 18 418 71 HOH HOH . H 5 HOH A 19 419 4 HOH HOH . H 5 HOH A 20 420 18 HOH HOH . H 5 HOH A 21 421 11 HOH HOH . H 5 HOH A 22 422 59 HOH HOH . H 5 HOH A 23 423 5 HOH HOH . H 5 HOH A 24 424 39 HOH HOH . H 5 HOH A 25 425 58 HOH HOH . H 5 HOH A 26 426 107 HOH HOH . H 5 HOH A 27 427 85 HOH HOH . H 5 HOH A 28 428 70 HOH HOH . H 5 HOH A 29 429 26 HOH HOH . H 5 HOH A 30 430 84 HOH HOH . H 5 HOH A 31 431 53 HOH HOH . H 5 HOH A 32 432 7 HOH HOH . H 5 HOH A 33 433 40 HOH HOH . H 5 HOH A 34 434 75 HOH HOH . H 5 HOH A 35 435 77 HOH HOH . H 5 HOH A 36 436 83 HOH HOH . H 5 HOH A 37 437 80 HOH HOH . H 5 HOH A 38 438 54 HOH HOH . H 5 HOH A 39 439 35 HOH HOH . H 5 HOH A 40 440 33 HOH HOH . H 5 HOH A 41 441 65 HOH HOH . H 5 HOH A 42 442 68 HOH HOH . H 5 HOH A 43 443 12 HOH HOH . H 5 HOH A 44 444 64 HOH HOH . H 5 HOH A 45 445 69 HOH HOH . I 5 HOH B 1 401 13 HOH HOH . I 5 HOH B 2 402 92 HOH HOH . I 5 HOH B 3 403 91 HOH HOH . I 5 HOH B 4 404 47 HOH HOH . I 5 HOH B 5 405 90 HOH HOH . I 5 HOH B 6 406 63 HOH HOH . I 5 HOH B 7 407 9 HOH HOH . I 5 HOH B 8 408 3 HOH HOH . I 5 HOH B 9 409 88 HOH HOH . I 5 HOH B 10 410 60 HOH HOH . I 5 HOH B 11 411 101 HOH HOH . I 5 HOH B 12 412 66 HOH HOH . I 5 HOH B 13 413 28 HOH HOH . I 5 HOH B 14 414 44 HOH HOH . I 5 HOH B 15 415 23 HOH HOH . I 5 HOH B 16 416 94 HOH HOH . I 5 HOH B 17 417 52 HOH HOH . I 5 HOH B 18 418 41 HOH HOH . I 5 HOH B 19 419 36 HOH HOH . I 5 HOH B 20 420 48 HOH HOH . I 5 HOH B 21 421 51 HOH HOH . I 5 HOH B 22 422 2 HOH HOH . I 5 HOH B 23 423 20 HOH HOH . I 5 HOH B 24 424 89 HOH HOH . I 5 HOH B 25 425 10 HOH HOH . I 5 HOH B 26 426 99 HOH HOH . I 5 HOH B 27 427 45 HOH HOH . I 5 HOH B 28 428 93 HOH HOH . I 5 HOH B 29 429 82 HOH HOH . I 5 HOH B 30 430 76 HOH HOH . I 5 HOH B 31 431 24 HOH HOH . I 5 HOH B 32 432 27 HOH HOH . I 5 HOH B 33 433 73 HOH HOH . I 5 HOH B 34 434 19 HOH HOH . I 5 HOH B 35 435 79 HOH HOH . I 5 HOH B 36 436 29 HOH HOH . I 5 HOH B 37 437 32 HOH HOH . I 5 HOH B 38 438 57 HOH HOH . I 5 HOH B 39 439 96 HOH HOH . I 5 HOH B 40 440 61 HOH HOH . I 5 HOH B 41 441 31 HOH HOH . I 5 HOH B 42 442 95 HOH HOH . I 5 HOH B 43 443 25 HOH HOH . I 5 HOH B 44 444 49 HOH HOH . I 5 HOH B 45 445 62 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . G 3 14.815 12.786 48.071 1 30.82 ? S DMS 303 B 1 HETATM 2 O O DMS . . . G 3 13.423 12.809 48.422 1 32.19 ? O DMS 303 B 1 HETATM 3 C C1 DMS . . . G 3 15.645 14.397 48.45 1 28.3 ? C1 DMS 303 B 1 HETATM 4 C C2 DMS . . . G 3 14.62 12.566 46.216 1 28.46 ? C2 DMS 303 B 1 HETATM 5 H H11 DMS . . . G 3 14.886 15.182 48.441 0 28.3 ? H11 DMS 303 B 1 HETATM 6 H H12 DMS . . . G 3 16.386 14.606 47.673 0 28.3 ? H12 DMS 303 B 1 HETATM 7 H H13 DMS . . . G 3 16.127 14.355 49.426 0 28.3 ? H13 DMS 303 B 1 HETATM 8 H H21 DMS . . . G 3 14.458 13.55 45.768 0 28.46 ? H21 DMS 303 B 1 HETATM 9 H H22 DMS . . . G 3 13.755 11.931 46.012 0 28.46 ? H22 DMS 303 B 1 HETATM 10 H H23 DMS . . . G 3 15.524 12.122 45.791 0 28.46 ? H23 DMS 303 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #