data_9GU4
#
_model_server_result.job_id            hwADGe9ogPwbyXl5rESuiQ 
_model_server_result.datetime_utc      '2025-03-04 16:18:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9gu4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":702}' 
#
_entry.id    9GU4 
#
_exptl.entry_id    9GU4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            9GU4 
_cell.length_a            97.029 
_cell.length_b            97.029 
_cell.length_c            265.041 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9GU4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 53 n n 
PB O2B ADP sing 54 n n 
PB O3B ADP sing 55 n n 
PB O3A ADP sing 56 n n 
O2B HOB2 ADP sing 57 n n 
O3B HOB3 ADP sing 58 n n 
PA O1A ADP doub 59 n n 
PA O2A ADP sing 60 n n 
PA O3A ADP sing 61 n n 
PA O5' ADP sing 62 n n 
O2A HOA2 ADP sing 63 n n 
O5' C5' ADP sing 64 n n 
C5' C4' ADP sing 65 n n 
C5' "H5'1" ADP sing 66 n n 
C5' "H5'2" ADP sing 67 n n 
C4' O4' ADP sing 68 n n 
C4' C3' ADP sing 69 n n 
C4' H4' ADP sing 70 n n 
O4' C1' ADP sing 71 n n 
C3' O3' ADP sing 72 n n 
C3' C2' ADP sing 73 n n 
C3' H3' ADP sing 74 n n 
O3' HO3' ADP sing 75 n n 
C2' O2' ADP sing 76 n n 
C2' C1' ADP sing 77 n n 
C2' H2' ADP sing 78 n n 
O2' HO2' ADP sing 79 n n 
C1' N9 ADP sing 80 n n 
C1' H1' ADP sing 81 n n 
N9 C8 ADP sing 82 n y 
N9 C4 ADP sing 83 n y 
C8 N7 ADP doub 84 n y 
C8 H8 ADP sing 85 n n 
N7 C5 ADP sing 86 n y 
C5 C6 ADP sing 87 n y 
C5 C4 ADP doub 88 n y 
C6 N6 ADP sing 89 n n 
C6 N1 ADP doub 90 n y 
N6 HN61 ADP sing 91 n n 
N6 HN62 ADP sing 92 n n 
N1 C2 ADP sing 93 n y 
C2 N3 ADP doub 94 n y 
C2 H2 ADP sing 95 n n 
N3 C4 ADP sing 96 n y 
#
_atom_sites.entry_id                     9GU4 
_atom_sites.fract_transf_matrix[1][1]    0.010306 
_atom_sites.fract_transf_matrix[1][2]    0.00595 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011901 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003773 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 A1IPJ A 1 701 1 A1IPJ LI1 . 
C 3 ADP A 1 702 1 ADP ADP . 
D 4 HOH A 1 801 61 HOH HOH . 
D 4 HOH A 2 802 10 HOH HOH . 
D 4 HOH A 3 803 66 HOH HOH . 
D 4 HOH A 4 804 4 HOH HOH . 
D 4 HOH A 5 805 28 HOH HOH . 
D 4 HOH A 6 806 77 HOH HOH . 
D 4 HOH A 7 807 93 HOH HOH . 
D 4 HOH A 8 808 82 HOH HOH . 
D 4 HOH A 9 809 7 HOH HOH . 
D 4 HOH A 10 810 18 HOH HOH . 
D 4 HOH A 11 811 14 HOH HOH . 
D 4 HOH A 12 812 6 HOH HOH . 
D 4 HOH A 13 813 86 HOH HOH . 
D 4 HOH A 14 814 34 HOH HOH . 
D 4 HOH A 15 815 25 HOH HOH . 
D 4 HOH A 16 816 1 HOH HOH . 
D 4 HOH A 17 817 67 HOH HOH . 
D 4 HOH A 18 818 11 HOH HOH . 
D 4 HOH A 19 819 15 HOH HOH . 
D 4 HOH A 20 820 65 HOH HOH . 
D 4 HOH A 21 821 100 HOH HOH . 
D 4 HOH A 22 822 2 HOH HOH . 
D 4 HOH A 23 823 16 HOH HOH . 
D 4 HOH A 24 824 104 HOH HOH . 
D 4 HOH A 25 825 24 HOH HOH . 
D 4 HOH A 26 826 51 HOH HOH . 
D 4 HOH A 27 827 59 HOH HOH . 
D 4 HOH A 28 828 41 HOH HOH . 
D 4 HOH A 29 829 103 HOH HOH . 
D 4 HOH A 30 830 9 HOH HOH . 
D 4 HOH A 31 831 73 HOH HOH . 
D 4 HOH A 32 832 39 HOH HOH . 
D 4 HOH A 33 833 98 HOH HOH . 
D 4 HOH A 34 834 32 HOH HOH . 
D 4 HOH A 35 835 8 HOH HOH . 
D 4 HOH A 36 836 30 HOH HOH . 
D 4 HOH A 37 837 35 HOH HOH . 
D 4 HOH A 38 838 116 HOH HOH . 
D 4 HOH A 39 839 21 HOH HOH . 
D 4 HOH A 40 840 48 HOH HOH . 
D 4 HOH A 41 841 69 HOH HOH . 
D 4 HOH A 42 842 90 HOH HOH . 
D 4 HOH A 43 843 23 HOH HOH . 
D 4 HOH A 44 844 47 HOH HOH . 
D 4 HOH A 45 845 42 HOH HOH . 
D 4 HOH A 46 846 5 HOH HOH . 
D 4 HOH A 47 847 54 HOH HOH . 
D 4 HOH A 48 848 102 HOH HOH . 
D 4 HOH A 49 849 49 HOH HOH . 
D 4 HOH A 50 850 33 HOH HOH . 
D 4 HOH A 51 851 12 HOH HOH . 
D 4 HOH A 52 852 31 HOH HOH . 
D 4 HOH A 53 853 95 HOH HOH . 
D 4 HOH A 54 854 17 HOH HOH . 
D 4 HOH A 55 855 64 HOH HOH . 
D 4 HOH A 56 856 71 HOH HOH . 
D 4 HOH A 57 857 40 HOH HOH . 
D 4 HOH A 58 858 62 HOH HOH . 
D 4 HOH A 59 859 60 HOH HOH . 
D 4 HOH A 60 860 79 HOH HOH . 
D 4 HOH A 61 861 111 HOH HOH . 
D 4 HOH A 62 862 44 HOH HOH . 
D 4 HOH A 63 863 89 HOH HOH . 
D 4 HOH A 64 864 87 HOH HOH . 
D 4 HOH A 65 865 19 HOH HOH . 
D 4 HOH A 66 866 43 HOH HOH . 
D 4 HOH A 67 867 91 HOH HOH . 
D 4 HOH A 68 868 72 HOH HOH . 
D 4 HOH A 69 869 46 HOH HOH . 
D 4 HOH A 70 870 88 HOH HOH . 
D 4 HOH A 71 871 38 HOH HOH . 
D 4 HOH A 72 872 101 HOH HOH . 
D 4 HOH A 73 873 13 HOH HOH . 
D 4 HOH A 74 874 85 HOH HOH . 
D 4 HOH A 75 875 37 HOH HOH . 
D 4 HOH A 76 876 58 HOH HOH . 
D 4 HOH A 77 877 36 HOH HOH . 
D 4 HOH A 78 878 78 HOH HOH . 
D 4 HOH A 79 879 55 HOH HOH . 
D 4 HOH A 80 880 26 HOH HOH . 
D 4 HOH A 81 881 70 HOH HOH . 
D 4 HOH A 82 882 63 HOH HOH . 
D 4 HOH A 83 883 56 HOH HOH . 
D 4 HOH A 84 884 22 HOH HOH . 
D 4 HOH A 85 885 20 HOH HOH . 
D 4 HOH A 86 886 92 HOH HOH . 
D 4 HOH A 87 887 99 HOH HOH . 
D 4 HOH A 88 888 74 HOH HOH . 
D 4 HOH A 89 889 83 HOH HOH . 
D 4 HOH A 90 890 80 HOH HOH . 
D 4 HOH A 91 891 57 HOH HOH . 
D 4 HOH A 92 892 45 HOH HOH . 
D 4 HOH A 93 893 81 HOH HOH . 
D 4 HOH A 94 894 68 HOH HOH . 
D 4 HOH A 95 895 3 HOH HOH . 
D 4 HOH A 96 896 117 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . C 3 16.36 35.248 4.818 1 38.57 ? PB ADP 702 A 1 
HETATM 2 O O1B ADP . . . C 3 15.627 35.485 6.119 1 38.98 ? O1B ADP 702 A 1 
HETATM 3 O O2B ADP . . . C 3 16.761 36.534 4.125 1 38.29 ? O2B ADP 702 A 1 
HETATM 4 O O3B ADP . . . C 3 15.621 34.298 3.898 1 38.33 ? O3B ADP 702 A 1 
HETATM 5 P PA ADP . . . C 3 18.323 33.943 6.661 1 39.2 ? PA ADP 702 A 1 
HETATM 6 O O1A ADP . . . C 3 18.719 35.06 7.539 1 39.24 ? O1A ADP 702 A 1 
HETATM 7 O O2A ADP . . . C 3 17.363 32.933 7.168 1 39.07 ? O2A ADP 702 A 1 
HETATM 8 O O3A ADP . . . C 3 17.746 34.54 5.294 1 38.79 ? O3A ADP 702 A 1 
HETATM 9 O O5' ADP . . . C 3 19.691 33.259 6.185 1 39.91 ? O5' ADP 702 A 1 
HETATM 10 C C5' ADP . . . C 3 19.784 31.846 5.884 1 40.13 ? C5' ADP 702 A 1 
HETATM 11 C C4' ADP . . . C 3 21.176 31.335 6.182 1 40.23 ? C4' ADP 702 A 1 
HETATM 12 O O4' ADP . . . C 3 22.143 32.297 5.72 1 40.05 ? O4' ADP 702 A 1 
HETATM 13 C C3' ADP . . . C 3 21.501 31.119 7.657 1 40.56 ? C3' ADP 702 A 1 
HETATM 14 O O3' ADP . . . C 3 21.166 29.795 8.064 1 40.94 ? O3' ADP 702 A 1 
HETATM 15 C C2' ADP . . . C 3 23.015 31.361 7.727 1 40.48 ? C2' ADP 702 A 1 
HETATM 16 O O2' ADP . . . C 3 23.853 30.219 7.582 1 40.97 ? O2' ADP 702 A 1 
HETATM 17 C C1' ADP . . . C 3 23.266 32.332 6.58 1 39.97 ? C1' ADP 702 A 1 
HETATM 18 N N9 ADP . . . C 3 23.457 33.702 7.01 1 39.75 ? N9 ADP 702 A 1 
HETATM 19 C C8 ADP . . . C 3 22.652 34.759 6.685 1 39.89 ? C8 ADP 702 A 1 
HETATM 20 N N7 ADP . . . C 3 23.117 35.922 7.066 1 39.96 ? N7 ADP 702 A 1 
HETATM 21 C C5 ADP . . . C 3 24.314 35.608 7.691 1 39.63 ? C5 ADP 702 A 1 
HETATM 22 C C6 ADP . . . C 3 25.316 36.405 8.274 1 39.27 ? C6 ADP 702 A 1 
HETATM 23 N N6 ADP . . . C 3 25.264 37.736 8.323 1 39.15 ? N6 ADP 702 A 1 
HETATM 24 N N1 ADP . . . C 3 26.407 35.78 8.772 1 39.13 ? N1 ADP 702 A 1 
HETATM 25 C C2 ADP . . . C 3 26.483 34.449 8.682 1 39.18 ? C2 ADP 702 A 1 
HETATM 26 N N3 ADP . . . C 3 25.603 33.593 8.154 1 39.4 ? N3 ADP 702 A 1 
HETATM 27 C C4 ADP . . . C 3 24.534 34.241 7.668 1 39.62 ? C4 ADP 702 A 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           30 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           27 
#