data_9GWO # _model_server_result.job_id L6jUDdpNX6eAHJCe4aq4Yw _model_server_result.datetime_utc '2024-11-27 02:14:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9gwo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":7206}' # _entry.id 9GWO # _exptl.entry_id 9GWO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 14 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9GWO _cell.length_a 168.08 _cell.length_b 168.08 _cell.length_c 51.72 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9GWO _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 O N N ? 4 Q N N ? 4 T N N ? 4 W N N ? 4 Y N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ALA 60 A ALA 6858 1_555 G NA NA . A NA 7205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.931 ? metalc ? metalc2 A O ASP 125 A ASP 6923 1_555 G NA NA . A NA 7205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.825 ? metalc ? metalc3 A OH TYR 132 A TYR 6930 1_555 S NA NA . A NA 7217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? metalc ? metalc4 A OG1 THR 172 A THR 6970 1_555 S NA NA . A NA 7217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.757 ? metalc ? metalc5 G NA NA . A NA 7205 1_555 Z O HOH . A HOH 7325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? metalc ? metalc6 S NA NA . A NA 7217 1_555 Z O HOH . A HOH 7371 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc7 B SG CYS 75 B CYS 4326 1_555 U ZN ZN . B ZN 8202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc8 B SG CYS 78 B CYS 4329 1_555 U ZN ZN . B ZN 8202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc9 B NE2 HIS 84 B HIS 4335 1_555 U ZN ZN . B ZN 8202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc10 B SG CYS 91 B CYS 4342 1_555 U ZN ZN . B ZN 8202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc11 B SG CYS 118 B CYS 4369 1_555 V ZN ZN . B ZN 8203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc12 B SG CYS 121 B CYS 4372 1_555 V ZN ZN . B ZN 8203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? metalc ? metalc13 B SG CYS 129 B CYS 4380 1_555 V ZN ZN . B ZN 8203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc14 B SG CYS 131 B CYS 4382 1_555 V ZN ZN . B ZN 8203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 164 n n C1 C2 EDO sing 165 n n C1 H11 EDO sing 166 n n C1 H12 EDO sing 167 n n O1 HO1 EDO sing 168 n n C2 O2 EDO sing 169 n n C2 H21 EDO sing 170 n n C2 H22 EDO sing 171 n n O2 HO2 EDO sing 172 n n # _atom_sites.entry_id 9GWO _atom_sites.fract_transf_matrix[1][1] 0.00595 _atom_sites.fract_transf_matrix[1][2] 0.003435 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00687 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019335 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MES A 1 7201 7906 MES MES . D 4 EDO A 1 7202 7907 EDO EDO . E 4 EDO A 1 7203 7909 EDO EDO . F 4 EDO A 1 7204 7910 EDO EDO . G 5 NA A 1 7205 7914 NA NA . H 4 EDO A 1 7206 7920 EDO EDO . I 4 EDO A 1 7207 7922 EDO EDO . J 4 EDO A 1 7208 7924 EDO EDO . K 6 A1IQS A 1 7209 8001 A1IQS LIG . L 4 EDO A 1 7210 8101 EDO EDO . M 4 EDO A 1 7211 8301 EDO EDO . N 4 EDO A 1 7212 8401 EDO EDO . O 4 EDO A 1 7213 8501 EDO EDO . P 7 DMS A 1 7214 8601 DMS DMS . Q 4 EDO A 1 7215 8701 EDO EDO . R 8 SAM A 1 7216 8801 SAM SAM . S 5 NA A 1 7217 1 NA NA . T 4 EDO B 1 8201 8201 EDO EDO . U 9 ZN B 1 8202 8653 ZN ZN . V 9 ZN B 1 8203 8654 ZN ZN . W 4 EDO B 1 8204 8657 EDO EDO . X 10 IMD B 1 8205 8660 IMD IMD . Y 4 EDO B 1 8206 8701 EDO EDO . Z 11 HOH A 1 7301 93 HOH HOH . Z 11 HOH A 2 7302 43 HOH HOH . Z 11 HOH A 3 7303 86 HOH HOH . Z 11 HOH A 4 7304 55 HOH HOH . Z 11 HOH A 5 7305 63 HOH HOH . Z 11 HOH A 6 7306 66 HOH HOH . Z 11 HOH A 7 7307 88 HOH HOH . Z 11 HOH A 8 7308 13 HOH HOH . Z 11 HOH A 9 7309 50 HOH HOH . Z 11 HOH A 10 7310 25 HOH HOH . Z 11 HOH A 11 7311 53 HOH HOH . Z 11 HOH A 12 7312 36 HOH HOH . Z 11 HOH A 13 7313 32 HOH HOH . Z 11 HOH A 14 7314 3 HOH HOH . Z 11 HOH A 15 7315 59 HOH HOH . Z 11 HOH A 16 7316 61 HOH HOH . Z 11 HOH A 17 7317 12 HOH HOH . Z 11 HOH A 18 7318 60 HOH HOH . Z 11 HOH A 19 7319 56 HOH HOH . Z 11 HOH A 20 7320 14 HOH HOH . Z 11 HOH A 21 7321 94 HOH HOH . Z 11 HOH A 22 7322 107 HOH HOH . Z 11 HOH A 23 7323 40 HOH HOH . Z 11 HOH A 24 7324 115 HOH HOH . Z 11 HOH A 25 7325 16 HOH HOH . Z 11 HOH A 26 7326 21 HOH HOH . Z 11 HOH A 27 7327 2 HOH HOH . Z 11 HOH A 28 7328 54 HOH HOH . Z 11 HOH A 29 7329 11 HOH HOH . Z 11 HOH A 30 7330 47 HOH HOH . Z 11 HOH A 31 7331 42 HOH HOH . Z 11 HOH A 32 7332 1 HOH HOH . Z 11 HOH A 33 7333 39 HOH HOH . Z 11 HOH A 34 7334 87 HOH HOH . Z 11 HOH A 35 7335 49 HOH HOH . Z 11 HOH A 36 7336 22 HOH HOH . Z 11 HOH A 37 7337 5 HOH HOH . Z 11 HOH A 38 7338 44 HOH HOH . Z 11 HOH A 39 7339 58 HOH HOH . Z 11 HOH A 40 7340 79 HOH HOH . Z 11 HOH A 41 7341 8 HOH HOH . Z 11 HOH A 42 7342 34 HOH HOH . Z 11 HOH A 43 7343 45 HOH HOH . Z 11 HOH A 44 7344 35 HOH HOH . Z 11 HOH A 45 7345 82 HOH HOH . Z 11 HOH A 46 7346 64 HOH HOH . Z 11 HOH A 47 7347 18 HOH HOH . Z 11 HOH A 48 7348 7 HOH HOH . Z 11 HOH A 49 7349 28 HOH HOH . Z 11 HOH A 50 7350 6 HOH HOH . Z 11 HOH A 51 7351 17 HOH HOH . Z 11 HOH A 52 7352 83 HOH HOH . Z 11 HOH A 53 7353 72 HOH HOH . Z 11 HOH A 54 7354 70 HOH HOH . Z 11 HOH A 55 7355 98 HOH HOH . Z 11 HOH A 56 7356 19 HOH HOH . Z 11 HOH A 57 7357 92 HOH HOH . Z 11 HOH A 58 7358 62 HOH HOH . Z 11 HOH A 59 7359 81 HOH HOH . Z 11 HOH A 60 7360 15 HOH HOH . Z 11 HOH A 61 7361 68 HOH HOH . Z 11 HOH A 62 7362 78 HOH HOH . Z 11 HOH A 63 7363 90 HOH HOH . Z 11 HOH A 64 7364 74 HOH HOH . Z 11 HOH A 65 7365 69 HOH HOH . Z 11 HOH A 66 7366 65 HOH HOH . Z 11 HOH A 67 7367 114 HOH HOH . Z 11 HOH A 68 7368 30 HOH HOH . Z 11 HOH A 69 7369 4 HOH HOH . Z 11 HOH A 70 7370 31 HOH HOH . Z 11 HOH A 71 7371 52 HOH HOH . Z 11 HOH A 72 7372 80 HOH HOH . Z 11 HOH A 73 7373 108 HOH HOH . Z 11 HOH A 74 7374 85 HOH HOH . Z 11 HOH A 75 7375 96 HOH HOH . Z 11 HOH A 76 7376 37 HOH HOH . Z 11 HOH A 77 7377 27 HOH HOH . Z 11 HOH A 78 7378 46 HOH HOH . Z 11 HOH A 79 7379 71 HOH HOH . Z 11 HOH A 80 7380 97 HOH HOH . Z 11 HOH A 81 7381 110 HOH HOH . Z 11 HOH A 82 7382 51 HOH HOH . Z 11 HOH A 83 7383 95 HOH HOH . Z 11 HOH A 84 7384 112 HOH HOH . Z 11 HOH A 85 7385 91 HOH HOH . Z 11 HOH A 86 7386 113 HOH HOH . Z 11 HOH A 87 7387 99 HOH HOH . Z 11 HOH A 88 7388 106 HOH HOH . Z 11 HOH A 89 7389 104 HOH HOH . AA 11 HOH B 1 8301 48 HOH HOH . AA 11 HOH B 2 8302 10 HOH HOH . AA 11 HOH B 3 8303 111 HOH HOH . AA 11 HOH B 4 8304 38 HOH HOH . AA 11 HOH B 5 8305 75 HOH HOH . AA 11 HOH B 6 8306 100 HOH HOH . AA 11 HOH B 7 8307 41 HOH HOH . AA 11 HOH B 8 8308 77 HOH HOH . AA 11 HOH B 9 8309 73 HOH HOH . AA 11 HOH B 10 8310 57 HOH HOH . AA 11 HOH B 11 8311 89 HOH HOH . AA 11 HOH B 12 8312 24 HOH HOH . AA 11 HOH B 13 8313 26 HOH HOH . AA 11 HOH B 14 8314 105 HOH HOH . AA 11 HOH B 15 8315 67 HOH HOH . AA 11 HOH B 16 8316 20 HOH HOH . AA 11 HOH B 17 8317 101 HOH HOH . AA 11 HOH B 18 8318 109 HOH HOH . AA 11 HOH B 19 8319 9 HOH HOH . AA 11 HOH B 20 8320 103 HOH HOH . AA 11 HOH B 21 8321 102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . H 4 -62.296 18.892 28.687 1 55.94 ? C1 EDO 7206 A 1 HETATM 2 O O1 EDO . . . H 4 -62.707 17.535 28.77 1 66.73 ? O1 EDO 7206 A 1 HETATM 3 C C2 EDO . . . H 4 -60.836 19.017 29.067 1 62.56 ? C2 EDO 7206 A 1 HETATM 4 O O2 EDO . . . H 4 -60.053 19.369 27.947 1 58.61 ? O2 EDO 7206 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 380 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #