data_9GXB # _model_server_result.job_id vChErJV3dk2_iES8lLGPxQ _model_server_result.datetime_utc '2025-02-18 18:25:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9gxb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 9GXB # _exptl.entry_id 9GXB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9GXB _cell.length_a 39.9 _cell.length_b 39.9 _cell.length_c 168.5 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9GXB _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 9GXB _atom_sites.fract_transf_matrix[1][1] 0.025063 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025063 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005935 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 301 301 FAD FAD . C 3 HOH A 1 401 1 HOH HOH . C 3 HOH A 2 402 42 HOH HOH . C 3 HOH A 3 403 24 HOH HOH . C 3 HOH A 4 404 11 HOH HOH . C 3 HOH A 5 405 57 HOH HOH . C 3 HOH A 6 406 30 HOH HOH . C 3 HOH A 7 407 18 HOH HOH . C 3 HOH A 8 408 36 HOH HOH . C 3 HOH A 9 409 47 HOH HOH . C 3 HOH A 10 410 53 HOH HOH . C 3 HOH A 11 411 55 HOH HOH . C 3 HOH A 12 412 33 HOH HOH . C 3 HOH A 13 413 25 HOH HOH . C 3 HOH A 14 414 22 HOH HOH . C 3 HOH A 15 415 50 HOH HOH . C 3 HOH A 16 416 8 HOH HOH . C 3 HOH A 17 417 54 HOH HOH . C 3 HOH A 18 418 13 HOH HOH . C 3 HOH A 19 419 7 HOH HOH . C 3 HOH A 20 420 32 HOH HOH . C 3 HOH A 21 421 43 HOH HOH . C 3 HOH A 22 422 9 HOH HOH . C 3 HOH A 23 423 16 HOH HOH . C 3 HOH A 24 424 64 HOH HOH . C 3 HOH A 25 425 17 HOH HOH . C 3 HOH A 26 426 35 HOH HOH . C 3 HOH A 27 427 15 HOH HOH . C 3 HOH A 28 428 23 HOH HOH . C 3 HOH A 29 429 48 HOH HOH . C 3 HOH A 30 430 37 HOH HOH . C 3 HOH A 31 431 60 HOH HOH . C 3 HOH A 32 432 40 HOH HOH . C 3 HOH A 33 433 26 HOH HOH . C 3 HOH A 34 434 3 HOH HOH . C 3 HOH A 35 435 27 HOH HOH . C 3 HOH A 36 436 52 HOH HOH . C 3 HOH A 37 437 21 HOH HOH . C 3 HOH A 38 438 31 HOH HOH . C 3 HOH A 39 439 45 HOH HOH . C 3 HOH A 40 440 51 HOH HOH . C 3 HOH A 41 441 28 HOH HOH . C 3 HOH A 42 442 34 HOH HOH . C 3 HOH A 43 443 61 HOH HOH . C 3 HOH A 44 444 56 HOH HOH . C 3 HOH A 45 445 29 HOH HOH . C 3 HOH A 46 446 46 HOH HOH . C 3 HOH A 47 447 2 HOH HOH . C 3 HOH A 48 448 41 HOH HOH . C 3 HOH A 49 449 12 HOH HOH . C 3 HOH A 50 450 59 HOH HOH . C 3 HOH A 51 451 63 HOH HOH . C 3 HOH A 52 452 19 HOH HOH . C 3 HOH A 53 453 39 HOH HOH . C 3 HOH A 54 454 44 HOH HOH . C 3 HOH A 55 455 62 HOH HOH . C 3 HOH A 56 456 4 HOH HOH . C 3 HOH A 57 457 14 HOH HOH . C 3 HOH A 58 458 49 HOH HOH . C 3 HOH A 59 459 5 HOH HOH . C 3 HOH A 60 460 6 HOH HOH . C 3 HOH A 61 461 58 HOH HOH . C 3 HOH A 62 462 20 HOH HOH . C 3 HOH A 63 463 38 HOH HOH . C 3 HOH A 64 464 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . B 2 4.125 13.857 10.29 1 32.5 ? PA FAD 301 A 1 HETATM 2 O O1A FAD . . . B 2 2.852 14.189 10.974 1 35.76 ? O1A FAD 301 A 1 HETATM 3 O O2A FAD . . . B 2 4.023 12.752 9.23 1 25.74 ? O2A FAD 301 A 1 HETATM 4 O O5B FAD . . . B 2 4.769 15.147 9.646 1 34.58 ? O5B FAD 301 A 1 HETATM 5 C C5B FAD . . . B 2 5.181 16.264 10.463 1 32.75 ? C5B FAD 301 A 1 HETATM 6 C C4B FAD . . . B 2 5.942 17.269 9.632 1 29.9 ? C4B FAD 301 A 1 HETATM 7 O O4B FAD . . . B 2 7.281 16.785 9.383 1 32.12 ? O4B FAD 301 A 1 HETATM 8 C C3B FAD . . . B 2 5.329 17.61 8.273 1 32.32 ? C3B FAD 301 A 1 HETATM 9 O O3B FAD . . . B 2 5.247 19.018 8.084 1 45.09 ? O3B FAD 301 A 1 HETATM 10 C C2B FAD . . . B 2 6.278 16.946 7.268 1 31.55 ? C2B FAD 301 A 1 HETATM 11 O O2B FAD . . . B 2 6.391 17.714 6.076 1 35.84 ? O2B FAD 301 A 1 HETATM 12 C C1B FAD . . . B 2 7.606 16.96 8.023 1 33.85 ? C1B FAD 301 A 1 HETATM 13 N N9A FAD . . . B 2 8.518 15.888 7.627 1 26.65 ? N9A FAD 301 A 1 HETATM 14 C C8A FAD . . . B 2 8.221 14.556 7.53 1 24.9 ? C8A FAD 301 A 1 HETATM 15 N N7A FAD . . . B 2 9.228 13.808 7.147 1 27.28 ? N7A FAD 301 A 1 HETATM 16 C C5A FAD . . . B 2 10.262 14.714 6.979 1 23.3 ? C5A FAD 301 A 1 HETATM 17 C C6A FAD . . . B 2 11.605 14.557 6.58 1 22.58 ? C6A FAD 301 A 1 HETATM 18 N N6A FAD . . . B 2 12.154 13.379 6.268 1 20.53 ? N6A FAD 301 A 1 HETATM 19 N N1A FAD . . . B 2 12.374 15.668 6.515 1 20.86 ? N1A FAD 301 A 1 HETATM 20 C C2A FAD . . . B 2 11.829 16.847 6.827 1 17.84 ? C2A FAD 301 A 1 HETATM 21 N N3A FAD . . . B 2 10.579 17.116 7.215 1 20.82 ? N3A FAD 301 A 1 HETATM 22 C C4A FAD . . . B 2 9.842 16.002 7.27 1 20.94 ? C4A FAD 301 A 1 HETATM 23 N N1 FAD . . . B 2 11.001 9.951 6.761 1 24.98 ? N1 FAD 301 A 1 HETATM 24 C C2 FAD . . . B 2 12.166 9.611 7.385 1 19.76 ? C2 FAD 301 A 1 HETATM 25 O O2 FAD . . . B 2 12.513 10.145 8.442 1 18.48 ? O2 FAD 301 A 1 HETATM 26 N N3 FAD . . . B 2 12.987 8.647 6.826 1 21.25 ? N3 FAD 301 A 1 HETATM 27 C C4 FAD . . . B 2 12.751 7.957 5.656 1 15.1 ? C4 FAD 301 A 1 HETATM 28 O O4 FAD . . . B 2 13.561 7.122 5.263 1 16.87 ? O4 FAD 301 A 1 HETATM 29 C C4X FAD . . . B 2 11.51 8.324 4.999 1 16.72 ? C4X FAD 301 A 1 HETATM 30 N N5 FAD . . . B 2 11.202 7.722 3.88 1 19.34 ? N5 FAD 301 A 1 HETATM 31 C C5X FAD . . . B 2 10.015 8.077 3.255 1 18.12 ? C5X FAD 301 A 1 HETATM 32 C C6 FAD . . . B 2 9.665 7.447 2.059 1 18.65 ? C6 FAD 301 A 1 HETATM 33 C C7 FAD . . . B 2 8.483 7.771 1.399 1 25.21 ? C7 FAD 301 A 1 HETATM 34 C C7M FAD . . . B 2 8.137 7.071 0.11 1 13.76 ? C7M FAD 301 A 1 HETATM 35 C C8 FAD . . . B 2 7.628 8.748 1.942 1 23.37 ? C8 FAD 301 A 1 HETATM 36 C C8M FAD . . . B 2 6.342 9.125 1.258 1 23.17 ? C8M FAD 301 A 1 HETATM 37 C C9 FAD . . . B 2 7.976 9.376 3.134 1 19.83 ? C9 FAD 301 A 1 HETATM 38 C C9A FAD . . . B 2 9.156 9.05 3.787 1 18.88 ? C9A FAD 301 A 1 HETATM 39 N N10 FAD . . . B 2 9.534 9.676 4.991 1 20.79 ? N10 FAD 301 A 1 HETATM 40 C C10 FAD . . . B 2 10.699 9.333 5.628 1 22.45 ? C10 FAD 301 A 1 HETATM 41 C C1' FAD . . . B 2 8.668 10.682 5.612 1 22.05 ? C1' FAD 301 A 1 HETATM 42 C C2' FAD . . . B 2 7.766 10.09 6.69 1 24.74 ? C2' FAD 301 A 1 HETATM 43 O O2' FAD . . . B 2 6.39 10.277 6.36 1 25.51 ? O2' FAD 301 A 1 HETATM 44 C C3' FAD . . . B 2 8.06 10.774 8.023 1 23.55 ? C3' FAD 301 A 1 HETATM 45 O O3' FAD . . . B 2 8.662 9.843 8.914 1 23.74 ? O3' FAD 301 A 1 HETATM 46 C C4' FAD . . . B 2 6.817 11.349 8.694 1 23.6 ? C4' FAD 301 A 1 HETATM 47 O O4' FAD . . . B 2 6.128 12.206 7.782 1 21.18 ? O4' FAD 301 A 1 HETATM 48 C C5' FAD . . . B 2 7.15 12.064 9.985 1 26.01 ? C5' FAD 301 A 1 HETATM 49 O O5' FAD . . . B 2 6.563 11.338 11.084 1 23.74 ? O5' FAD 301 A 1 HETATM 50 P P FAD . . . B 2 5.457 11.99 11.996 1 24.2 ? P FAD 301 A 1 HETATM 51 O O1P FAD . . . B 2 6.123 12.181 13.361 1 24.44 ? O1P FAD 301 A 1 HETATM 52 O O2P FAD . . . B 2 4.19 11.215 11.989 1 27.1 ? O2P FAD 301 A 1 HETATM 53 O O3P FAD . . . B 2 5.223 13.431 11.355 1 28.05 ? O3P FAD 301 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 36 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 372 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 53 #